Wall clock time and date at job start Tue Mar 31 2020 00:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00442 * 2 1 4 4 H 1.48498 * 109.47322 * 239.99546 * 3 2 1 5 5 H 1.48495 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99793 * 3 2 1 7 7 C 1.38820 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99672 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00318 * 185.57561 * 9 7 2 11 11 C 1.52996 * 115.55783 * 272.02772 * 10 9 7 12 12 N 1.46497 * 109.47528 * 325.04233 * 11 10 9 13 13 C 1.34777 * 120.00169 * 174.22236 * 12 11 10 14 14 O 1.21277 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99890 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47177 * 179.97438 * 15 13 12 17 17 H 1.09009 * 109.35242 * 304.72318 * 16 15 13 18 18 C 1.50069 * 109.36036 * 64.30370 * 16 15 13 19 19 C 1.29446 * 124.07124 * 137.33749 * 18 16 15 20 20 C 1.50064 * 124.07903 * 359.53638 * 19 18 16 21 21 C 1.53029 * 110.14445 * 17.12700 * 20 19 18 22 22 C 1.53022 * 109.36011 * 185.00139 * 16 15 13 23 23 C 1.53002 * 117.49814 * 57.71317 * 10 9 7 24 24 C 1.52998 * 117.49890 * 126.33823 * 10 9 7 25 25 H 0.97007 * 119.99681 * 359.97438 * 1 2 3 26 26 H 0.97012 * 119.99894 * 5.56755 * 9 7 2 27 27 H 1.09005 * 109.47078 * 85.04149 * 11 10 9 28 28 H 1.09001 * 109.47125 * 205.03781 * 11 10 9 29 29 H 0.96997 * 119.99621 * 354.21511 * 12 11 10 30 30 H 1.08999 * 109.46601 * 299.99659 * 15 13 12 31 31 H 1.09005 * 109.47118 * 59.99444 * 15 13 12 32 32 H 1.07998 * 117.96603 * 317.32469 * 18 16 15 33 33 H 1.08001 * 117.96025 * 179.51412 * 19 18 16 34 34 H 1.08993 * 109.35879 * 256.92390 * 20 19 18 35 35 H 1.08998 * 109.36157 * 137.33636 * 20 19 18 36 36 H 1.09000 * 109.64268 * 190.87593 * 21 20 19 37 37 H 1.09003 * 109.81494 * 70.35448 * 21 20 19 38 38 H 1.09001 * 109.63484 * 310.03692 * 22 16 15 39 39 H 1.09000 * 109.64418 * 70.66371 * 22 16 15 40 40 H 1.09001 * 117.49977 * 0.02562 * 23 10 9 41 41 H 1.08996 * 117.49715 * 214.98431 * 23 10 9 42 42 H 1.09007 * 117.49670 * 145.02585 * 24 10 9 43 43 H 1.09000 * 117.50161 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0526 -3.6539 0.1244 11 6 2.5390 -4.2670 -1.1903 12 7 1.5626 -3.9933 -2.2476 13 6 1.8348 -4.3377 -3.5219 14 8 2.8882 -4.8739 -3.7933 15 6 0.8306 -4.0556 -4.6096 16 6 1.3823 -4.5411 -5.9515 17 1 2.3540 -4.0805 -6.1305 18 6 1.5417 -6.0328 -5.9134 19 6 1.2130 -6.8223 -6.8852 20 6 0.6174 -6.3572 -8.1817 21 6 0.8486 -4.8549 -8.3589 22 6 0.4180 -4.1423 -7.0707 23 6 2.9326 -3.8450 1.3613 24 6 1.6160 -4.6138 1.2328 25 1 -0.4850 0.8401 0.0004 26 1 0.3588 -2.3900 -0.0813 27 1 3.5001 -3.8301 -1.4613 28 1 2.6509 -5.3445 -1.0692 29 1 0.7202 -3.5642 -2.0305 30 1 -0.1004 -4.5776 -4.3888 31 1 0.6424 -2.9831 -4.6611 32 1 1.9566 -6.4752 -5.0198 33 1 1.3780 -7.8816 -6.7549 34 1 -0.4534 -6.5603 -8.1808 35 1 1.0843 -6.8944 -9.0071 36 1 0.2543 -4.4890 -9.1962 37 1 1.9048 -4.6633 -8.5480 38 1 -0.5953 -4.4445 -6.8060 39 1 0.4548 -3.0631 -7.2189 40 1 2.9702 -3.0291 2.0832 41 1 3.8580 -4.4075 1.2385 42 1 1.6754 -5.6824 1.0255 43 1 0.7875 -4.3039 1.8697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323470968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:38 Heat of formation + Delta-G solvation = -19.983684 kcal Electronic energy + Delta-G solvation = -21642.472753 eV Core-core repulsion = 18494.395038 eV Total energy + Delta-G solvation = -3148.077716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99561 -39.43245 -38.68214 -35.13669 -34.87832 -33.57034 -31.85334 -31.60214 -29.15933 -26.90917 -25.90120 -23.35608 -23.19591 -22.92146 -21.17129 -20.53143 -19.05365 -18.81814 -18.00116 -17.47671 -16.82862 -16.51160 -16.29290 -15.77750 -15.34926 -15.14936 -15.02850 -14.73314 -14.49898 -13.89985 -13.63793 -13.56768 -13.47810 -13.17101 -12.97172 -12.90118 -12.78336 -12.37021 -12.26145 -12.23743 -11.95370 -11.71181 -11.61333 -11.41011 -11.05390 -10.91577 -10.75234 -10.50578 -9.87122 -9.82693 -9.09436 -7.95057 -5.24373 1.45219 1.47491 1.47671 1.53824 1.74996 2.34745 2.55088 3.04594 3.37578 3.63100 3.74425 3.83813 3.90625 3.92985 4.07740 4.18642 4.30623 4.39286 4.43028 4.51860 4.53409 4.71490 4.75512 4.81804 4.83594 4.86492 4.88325 4.94070 5.03001 5.09811 5.11250 5.16239 5.23824 5.40171 5.45279 5.50262 5.55068 5.61897 5.85116 6.11910 6.27616 6.70093 7.34099 7.35137 8.05488 8.31000 9.26551 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.004129 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.160385 B = 6779.401994 C = 7843.956868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.062 4.062 3 Si 0.961 3.039 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.065 0.935 9 N -0.695 5.695 10 C 0.096 3.904 11 C 0.156 3.844 12 N -0.706 5.706 13 C 0.505 3.495 14 O -0.586 6.586 15 C -0.128 4.128 16 C -0.039 4.039 17 H 0.063 0.937 18 C -0.152 4.152 19 C -0.163 4.163 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.172 4.172 24 C -0.162 4.162 25 H 0.251 0.749 26 H 0.379 0.621 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.407 0.593 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -12.372 -11.982 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.791 3.209 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.361 4.361 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.004 3.996 11 C 0.029 3.971 12 N -0.357 5.357 13 C 0.293 3.707 14 O -0.468 6.468 15 C -0.167 4.167 16 C -0.057 4.057 17 H 0.081 0.919 18 C -0.170 4.170 19 C -0.181 4.181 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.211 4.211 24 C -0.200 4.200 25 H 0.060 0.940 26 H 0.213 0.787 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.416 -12.594 -12.124 17.486 hybrid contribution 0.013 1.376 0.636 1.516 sum -0.403 -11.218 -11.487 16.061 Atomic orbital electron populations 1.69757 1.06063 1.26021 1.59194 1.25350 0.96231 1.00244 1.03664 0.85405 0.77377 0.80262 0.77839 1.21111 1.22045 1.20845 1.19325 0.90962 0.84725 1.41117 0.91675 1.41676 1.05394 0.99293 1.87142 1.20449 1.01445 0.89018 0.88729 1.21031 0.91208 0.98511 0.86339 1.45894 1.21842 1.60951 1.06964 1.21218 0.88144 0.77385 0.83958 1.90621 1.27810 1.45207 1.83114 1.21727 0.98394 1.04219 0.92389 1.19769 0.99101 0.93376 0.93475 0.91900 1.22092 1.00546 0.95360 0.99029 1.22250 1.00526 0.99312 0.96029 1.20489 1.01236 0.95938 0.94861 1.21612 1.01478 0.95089 0.97548 1.21675 0.98793 1.00680 0.93935 1.23137 0.95247 1.02585 1.00124 1.23337 0.97917 0.97636 1.01148 0.93981 0.78731 0.94028 0.90892 0.75722 0.87092 0.87867 0.89710 0.87737 0.89787 0.90152 0.89822 0.92669 0.90590 0.90898 0.90319 0.87322 0.86563 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.16 13.07 21.65 0.28 -54.88 16 2 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 3 Si 0.96 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.23 -12.10 9.75 84.04 0.82 -11.28 16 8 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.70 -32.11 4.50 -303.35 -1.37 -33.48 16 10 C 0.10 3.55 2.51 3.60 0.01 3.55 16 11 C 0.16 5.53 5.90 86.38 0.51 6.04 16 12 N -0.71 -24.31 5.39 -463.06 -2.50 -26.81 16 13 C 0.50 17.06 7.46 87.66 0.65 17.71 16 14 O -0.59 -23.27 14.23 -3.02 -0.04 -23.31 16 15 C -0.13 -3.30 5.14 29.85 0.15 -3.15 16 16 C -0.04 -0.96 2.12 -11.73 -0.02 -0.99 16 17 H 0.06 1.84 7.96 -2.38 -0.02 1.83 16 18 C -0.15 -3.96 8.41 27.03 0.23 -3.74 16 19 C -0.16 -3.47 9.80 27.03 0.27 -3.21 16 20 C -0.09 -1.42 6.12 29.66 0.18 -1.24 16 21 C -0.12 -1.98 6.01 30.73 0.18 -1.80 16 22 C -0.11 -2.13 5.30 30.73 0.16 -1.97 16 23 C -0.17 -5.76 9.90 30.60 0.30 -5.46 16 24 C -0.16 -4.96 10.10 30.60 0.31 -4.65 16 25 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 26 H 0.38 18.51 7.94 -92.70 -0.74 17.77 16 27 H 0.04 1.65 8.13 -2.38 -0.02 1.63 16 28 H 0.07 2.32 7.90 -2.39 -0.02 2.30 16 29 H 0.41 13.94 7.69 -92.71 -0.71 13.22 16 30 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.08 2.64 6.47 -2.91 -0.02 2.62 16 33 H 0.10 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 38 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.12 2.86 8.05 -2.38 -0.02 2.84 16 43 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -62.92 349.93 2.17 -60.75 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: -0.45 Total: 43.66 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.22 Total: -13.07 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -3.58 Total: -115.17 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -62.92 2.17 -60.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323470968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.768 kcal (2) G-P(sol) polarization free energy of solvation -62.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds