Wall clock time and date at job start Tue Mar 31 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00111 * 2 1 4 4 H 1.48507 * 109.47016 * 240.00106 * 3 2 1 5 5 H 1.48497 * 109.47483 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47160 * 120.00259 * 3 2 1 7 7 C 1.38811 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00458 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00128 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00220 * 177.30124 * 9 7 2 11 11 C 1.53007 * 115.55278 * 295.38576 * 10 9 7 12 12 N 1.46494 * 109.47089 * 279.54022 * 11 10 9 13 13 C 1.34782 * 119.99979 * 176.08276 * 12 11 10 14 14 O 1.21276 * 119.99694 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.46852 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.81223 * 54.47170 * 16 15 13 18 18 C 1.53419 * 109.95489 * 293.88912 * 16 15 13 19 19 C 1.50064 * 110.28246 * 191.03510 * 18 16 15 20 20 C 1.29447 * 124.07735 * 17.05031 * 19 18 16 21 21 C 1.50065 * 124.07078 * 359.54991 * 20 19 18 22 22 C 1.53019 * 110.14991 * 17.13671 * 21 20 19 23 23 C 1.53001 * 117.51696 * 81.08836 * 10 9 7 24 24 C 1.53005 * 60.00328 * 107.48366 * 23 10 9 25 25 H 0.96993 * 119.99631 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00185 * 357.30940 * 9 7 2 27 27 H 1.08998 * 109.47127 * 159.53398 * 11 10 9 28 28 H 1.08999 * 109.46436 * 39.53562 * 11 10 9 29 29 H 0.97003 * 120.00121 * 356.08115 * 12 11 10 30 30 H 1.09007 * 109.46935 * 59.99799 * 15 13 12 31 31 H 1.09000 * 109.46975 * 300.00071 * 15 13 12 32 32 H 1.09002 * 109.34099 * 70.75414 * 18 16 15 33 33 H 1.09004 * 109.12961 * 311.18655 * 18 16 15 34 34 H 1.07999 * 117.96390 * 197.06898 * 19 18 16 35 35 H 1.07996 * 117.96398 * 179.57459 * 20 19 18 36 36 H 1.08998 * 109.35963 * 256.92072 * 21 20 19 37 37 H 1.09009 * 109.24548 * 137.27203 * 21 20 19 38 38 H 1.08991 * 109.65018 * 70.24442 * 22 21 20 39 39 H 1.09002 * 109.64256 * 190.66831 * 22 21 20 40 40 H 1.09004 * 117.49985 * 214.97211 * 23 10 9 41 41 H 1.08992 * 117.49982 * 359.97438 * 23 10 9 42 42 H 1.08999 * 117.49455 * 252.51580 * 24 23 10 43 43 H 1.08997 * 117.50283 * 107.48764 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0567 -3.6561 -0.0608 11 6 2.8471 -3.9016 -1.3478 12 7 1.9400 -4.3797 -2.3941 13 6 2.4022 -4.5882 -3.6430 14 8 3.5688 -4.3797 -3.9005 15 6 1.4692 -5.0805 -4.7192 16 6 2.2401 -5.2321 -6.0321 17 1 3.1091 -5.8719 -5.8785 18 6 2.6983 -3.8560 -6.5321 19 6 3.2145 -3.9586 -7.9375 20 6 2.9789 -4.9582 -8.7255 21 6 2.1647 -6.1585 -8.3406 22 6 1.3265 -5.8504 -7.0980 23 6 2.6467 -4.1946 1.2441 24 6 1.4231 -4.8702 0.6216 25 1 -0.4849 0.8400 0.0004 26 1 0.3563 -2.3886 0.0393 27 1 3.6169 -4.6510 -1.1640 28 1 3.3150 -2.9714 -1.6698 29 1 1.0068 -4.5461 -2.1882 30 1 0.6596 -4.3631 -4.8543 31 1 1.0547 -6.0454 -4.4273 32 1 3.4897 -3.4812 -5.8830 33 1 1.8538 -3.1673 -6.5068 34 1 3.8206 -3.1482 -8.3148 35 1 3.3945 -4.9264 -9.7218 36 1 2.8313 -6.9944 -8.1287 37 1 1.5036 -6.4238 -9.1657 38 1 0.5350 -5.1466 -7.3551 39 1 0.8874 -6.7715 -6.7146 40 1 3.5979 -4.7238 1.1858 41 1 2.4912 -3.6053 2.1477 42 1 0.4624 -4.7253 1.1157 43 1 1.5693 -5.8437 0.1537 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323515912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:44 Heat of formation + Delta-G solvation = -23.994553 kcal Electronic energy + Delta-G solvation = -21592.761953 eV Core-core repulsion = 18444.510313 eV Total energy + Delta-G solvation = -3148.251640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99491 -39.43348 -38.65532 -35.27521 -34.76038 -33.68266 -31.65455 -31.58000 -29.22524 -26.89497 -25.93038 -24.06701 -23.29312 -22.29511 -21.13758 -20.51203 -19.14771 -18.86565 -17.93959 -17.27265 -16.85295 -16.49266 -16.30310 -15.90155 -15.50536 -15.12570 -15.03094 -14.70767 -14.38033 -13.88125 -13.76748 -13.62269 -13.32805 -13.16839 -12.95592 -12.90676 -12.83058 -12.40080 -12.30727 -12.23970 -11.89228 -11.70698 -11.61509 -11.48248 -11.00767 -10.95496 -10.87755 -10.46597 -9.95843 -9.81629 -9.03394 -7.97748 -5.25741 1.43037 1.44326 1.46066 1.51806 1.76867 2.29867 2.51685 3.10273 3.37557 3.66433 3.73442 3.79726 3.85742 3.89985 4.15387 4.19994 4.29194 4.33548 4.44193 4.50198 4.60293 4.75323 4.77769 4.80391 4.82794 4.85604 4.94496 4.98498 5.04843 5.07808 5.13723 5.20694 5.24541 5.38886 5.39974 5.52611 5.53060 5.59599 5.80455 6.10215 6.25486 6.70863 7.31712 7.39218 8.05671 8.28917 9.24518 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.004068 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.928617 B = 6881.199858 C = 7881.542320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.232 4.232 8 H 0.067 0.933 9 N -0.699 5.699 10 C 0.099 3.901 11 C 0.159 3.841 12 N -0.709 5.709 13 C 0.502 3.498 14 O -0.587 6.587 15 C -0.128 4.128 16 C -0.065 4.065 17 H 0.063 0.937 18 C -0.094 4.094 19 C -0.169 4.169 20 C -0.159 4.159 21 C -0.091 4.091 22 C -0.112 4.112 23 C -0.188 4.188 24 C -0.150 4.150 25 H 0.251 0.749 26 H 0.378 0.622 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.410 0.590 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -16.340 -12.384 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.085 0.915 9 N -0.337 5.337 10 C 0.007 3.993 11 C 0.033 3.967 12 N -0.359 5.359 13 C 0.290 3.710 14 O -0.468 6.468 15 C -0.168 4.168 16 C -0.084 4.084 17 H 0.082 0.918 18 C -0.131 4.131 19 C -0.187 4.187 20 C -0.177 4.177 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.228 4.228 24 C -0.188 4.188 25 H 0.060 0.940 26 H 0.211 0.789 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.245 0.755 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.519 -16.027 -12.564 20.421 hybrid contribution -0.057 1.685 0.392 1.731 sum 1.462 -14.343 -12.172 18.868 Atomic orbital electron populations 1.69766 1.06196 1.26047 1.59372 1.25393 0.96289 1.00492 1.03746 0.85379 0.77404 0.80051 0.77956 1.21236 1.21871 1.20405 1.19368 0.91108 0.84982 1.40961 0.91498 1.41811 1.04972 0.99453 1.87487 1.20362 1.00271 0.87154 0.91495 1.20907 0.91647 0.97586 0.86551 1.45919 1.13990 1.66651 1.09358 1.21424 0.89076 0.76781 0.83708 1.90635 1.20322 1.53824 1.82052 1.21802 0.97906 1.04753 0.92321 1.20951 0.98093 0.96321 0.93067 0.91829 1.20622 1.00408 0.97871 0.94183 1.22119 1.01288 0.99565 0.95761 1.22289 0.99938 0.95997 0.99466 1.20511 0.98139 0.95921 0.98222 1.21674 0.97367 1.01526 0.94322 1.23380 0.98055 1.03886 0.97477 1.23149 0.97318 0.95711 1.02612 0.93990 0.78877 0.91268 0.94816 0.75476 0.87831 0.85587 0.92660 0.91791 0.88515 0.86944 0.90381 0.89247 0.91443 0.89385 0.87610 0.90389 0.88918 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.62 13.06 21.65 0.28 -57.34 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.96 46.67 29.55 68.60 2.03 48.69 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.23 -12.76 9.53 84.03 0.80 -11.96 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.70 -33.60 5.50 -303.33 -1.67 -35.27 16 10 C 0.10 3.67 2.17 3.61 0.01 3.68 16 11 C 0.16 5.79 5.72 86.38 0.49 6.28 16 12 N -0.71 -21.75 5.52 -463.06 -2.55 -24.30 16 13 C 0.50 15.52 7.60 87.66 0.67 16.19 16 14 O -0.59 -23.01 14.12 -3.02 -0.04 -23.05 16 15 C -0.13 -2.70 5.18 29.85 0.15 -2.55 16 16 C -0.07 -1.44 1.88 -10.52 -0.02 -1.46 16 17 H 0.06 1.61 7.93 -2.39 -0.02 1.59 16 18 C -0.09 -2.52 5.08 29.79 0.15 -2.37 16 19 C -0.17 -4.00 9.81 27.03 0.27 -3.73 16 20 C -0.16 -3.03 9.81 27.03 0.27 -2.77 16 21 C -0.09 -1.38 6.12 29.66 0.18 -1.19 16 22 C -0.11 -1.75 5.29 30.73 0.16 -1.59 16 23 C -0.19 -6.07 10.10 30.60 0.31 -5.76 16 24 C -0.15 -4.23 10.07 30.60 0.31 -3.92 16 25 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.38 19.33 8.03 -92.71 -0.74 18.59 16 27 H 0.07 2.30 7.94 -2.39 -0.02 2.28 16 28 H 0.03 1.51 7.76 -2.39 -0.02 1.49 16 29 H 0.41 10.77 8.41 -92.71 -0.78 9.99 16 30 H 0.10 2.02 8.10 -2.38 -0.02 2.00 16 31 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.88 6.34 -2.39 -0.02 1.86 16 33 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 34 H 0.10 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.11 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 2.92 8.08 -2.39 -0.02 2.91 16 41 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -68.40 350.97 1.73 -66.67 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.53 Total: 39.09 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.21 Total: -14.48 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -3.94 Total: -116.91 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.04 Total: -23.05 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -68.40 1.73 -66.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323515912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.672 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds