Wall clock time and date at job start Tue Mar 31 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47278 * 270.00531 * 3 2 1 5 5 H 1.48500 * 109.46856 * 30.00545 * 3 2 1 6 6 H 1.48504 * 109.46872 * 150.00188 * 3 2 1 7 7 C 1.38811 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99834 * 177.30793 * 9 7 2 11 11 C 1.52999 * 115.54810 * 295.38304 * 10 9 7 12 12 N 1.46503 * 109.47510 * 279.53878 * 11 10 9 13 13 C 1.34772 * 120.00580 * 176.08214 * 12 11 10 14 14 O 1.21286 * 119.99800 * 0.02562 * 13 12 11 15 15 C 1.50691 * 120.00220 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47162 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.64158 * 305.00009 * 16 15 13 18 18 C 1.53018 * 109.81864 * 65.53331 * 16 15 13 19 19 C 1.50063 * 110.15141 * 169.22743 * 18 16 15 20 20 C 1.29445 * 124.07099 * 342.86025 * 19 18 16 21 21 C 1.50069 * 124.07977 * 0.47705 * 20 19 18 22 22 C 1.53023 * 110.14239 * 342.86757 * 21 20 19 23 23 C 1.52996 * 117.52251 * 81.08578 * 10 9 7 24 24 C 1.52999 * 60.00236 * 107.48010 * 23 10 9 25 25 H 0.97006 * 119.99678 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00151 * 357.30894 * 9 7 2 27 27 H 1.09008 * 109.47374 * 159.54272 * 11 10 9 28 28 H 1.08998 * 109.47494 * 39.54439 * 11 10 9 29 29 H 0.97003 * 119.99276 * 356.08879 * 12 11 10 30 30 H 1.08998 * 109.47107 * 60.00441 * 15 13 12 31 31 H 1.09002 * 109.47603 * 300.00432 * 15 13 12 32 32 H 1.09004 * 109.35670 * 289.43105 * 18 16 15 33 33 H 1.08999 * 109.36082 * 49.00943 * 18 16 15 34 34 H 1.07995 * 117.96538 * 162.84594 * 19 18 16 35 35 H 1.08001 * 117.95959 * 180.44824 * 20 19 18 36 36 H 1.08994 * 109.35753 * 222.66007 * 21 20 19 37 37 H 1.08998 * 109.24482 * 102.99723 * 21 20 19 38 38 H 1.09003 * 109.64026 * 289.74752 * 22 21 20 39 39 H 1.08998 * 109.63976 * 169.12516 * 22 21 20 40 40 H 1.08995 * 117.50246 * 214.97391 * 23 10 9 41 41 H 1.09005 * 117.49411 * 359.97438 * 23 10 9 42 42 H 1.08997 * 117.49846 * 252.51269 * 24 23 10 43 43 H 1.08997 * 117.49535 * 107.49182 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0567 -3.6561 -0.0607 11 6 2.8470 -3.9016 -1.3475 12 7 1.9401 -4.3798 -2.3940 13 6 2.4021 -4.5883 -3.6428 14 8 3.5690 -4.3805 -3.9001 15 6 1.4691 -5.0796 -4.7192 16 6 2.2403 -5.2326 -6.0318 17 1 2.7309 -4.2915 -6.2804 18 6 3.2889 -6.3381 -5.8915 19 6 3.8669 -6.6759 -7.2345 20 6 3.3184 -6.3537 -8.3619 21 6 2.0333 -5.5883 -8.4834 22 6 1.2723 -5.6221 -7.1562 23 6 2.6466 -4.1946 1.2442 24 6 1.4230 -4.8701 0.6217 25 1 -0.4850 0.8401 0.0004 26 1 0.3563 -2.3885 0.0393 27 1 3.6169 -4.6511 -1.1638 28 1 3.3151 -2.9714 -1.6696 29 1 1.0069 -4.5462 -2.1881 30 1 0.6602 -4.3616 -4.8544 31 1 1.0537 -6.0442 -4.4277 32 1 4.0861 -5.9981 -5.2304 33 1 2.8229 -7.2263 -5.4649 34 1 4.7984 -7.2216 -7.2623 35 1 3.8169 -6.6539 -9.2717 36 1 1.4184 -6.0363 -9.2640 37 1 2.2546 -4.5540 -8.7467 38 1 0.8899 -6.6273 -6.9787 39 1 0.4453 -4.9129 -7.1899 40 1 3.5977 -4.7237 1.1860 41 1 2.4910 -3.6051 2.1478 42 1 0.4624 -4.7252 1.1158 43 1 1.5693 -5.8437 0.1539 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323515914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:49 Heat of formation + Delta-G solvation = -5.039959 kcal Electronic energy + Delta-G solvation = -21549.266034 eV Core-core repulsion = 18401.836327 eV Total energy + Delta-G solvation = -3147.429707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.82122 -38.31880 -37.33848 -33.68941 -33.02027 -32.75749 -30.79645 -29.71340 -28.08519 -25.65815 -23.90436 -23.24515 -21.98228 -21.31686 -19.86954 -19.03900 -18.00816 -17.13926 -16.67926 -16.13518 -15.59843 -15.28598 -14.86677 -14.36906 -14.22596 -13.98947 -13.52343 -13.39605 -13.09412 -12.85443 -12.68879 -12.35469 -12.16939 -12.07053 -11.87571 -11.47772 -10.99041 -10.98094 -10.90471 -10.72541 -10.59038 -10.27004 -10.25992 -10.17744 -9.75358 -9.55099 -9.28591 -9.00948 -8.84861 -8.54402 -7.07901 -5.84658 -3.14753 2.25391 3.00760 3.41318 3.47234 3.48120 3.53631 4.41664 4.57787 4.59734 4.66314 4.80976 5.07700 5.14082 5.21925 5.27565 5.29585 5.31464 5.44626 5.45343 5.56175 5.62181 5.64599 5.70086 5.77566 5.80663 5.83186 5.91251 6.06987 6.10204 6.22490 6.30469 6.41168 6.41673 6.55660 6.61783 6.68482 6.75683 6.89190 6.95333 7.68504 7.94222 8.33442 8.62505 9.44949 9.98261 10.33327 11.37347 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.003806 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.321549 B = 7354.623681 C = 8110.936338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.689 5.689 10 C 0.130 3.870 11 C 0.147 3.853 12 N -0.713 5.713 13 C 0.508 3.492 14 O -0.548 6.548 15 C -0.137 4.137 16 C -0.070 4.070 17 H 0.081 0.919 18 C -0.093 4.093 19 C -0.144 4.144 20 C -0.168 4.168 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.189 4.189 24 C -0.187 4.187 25 H 0.256 0.744 26 H 0.388 0.612 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.399 0.601 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -14.974 -11.319 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.035 3.965 11 C 0.022 3.978 12 N -0.363 5.363 13 C 0.295 3.705 14 O -0.427 6.427 15 C -0.177 4.177 16 C -0.089 4.089 17 H 0.099 0.901 18 C -0.129 4.129 19 C -0.162 4.162 20 C -0.187 4.187 21 C -0.126 4.126 22 C -0.154 4.154 23 C -0.230 4.230 24 C -0.224 4.224 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.233 0.767 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.383 -14.629 -11.495 18.757 hybrid contribution -0.294 0.884 0.178 0.949 sum 2.089 -13.745 -11.317 17.926 Atomic orbital electron populations 1.69658 1.05123 1.25846 1.57346 1.24747 0.95526 0.97750 1.02554 0.86179 0.78743 0.83607 0.77633 1.21598 1.21744 1.20597 1.19172 0.91176 0.83518 1.42998 0.90957 1.41789 1.05333 0.98445 1.87276 1.20165 0.98271 0.87443 0.90581 1.21222 0.91130 0.99156 0.86334 1.45944 1.13780 1.66957 1.09574 1.20599 0.88968 0.77697 0.83264 1.90642 1.18225 1.52213 1.81589 1.21753 0.98838 1.02921 0.94218 1.20931 0.95374 0.99952 0.92608 0.90104 1.20636 0.99317 0.97629 0.95344 1.22118 0.99379 1.00014 0.94719 1.21998 0.97911 1.01138 0.97607 1.20416 0.94517 0.99994 0.97653 1.21687 0.97743 1.01682 0.94299 1.23368 0.95966 1.04015 0.99644 1.23062 0.98089 0.96071 1.05218 0.93423 0.77741 0.92652 0.90401 0.76721 0.88786 0.89228 0.88959 0.91551 0.88338 0.88441 0.91351 0.91000 0.91785 0.91512 0.89935 0.88669 0.89029 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.43 9.53 -15.06 -0.14 -6.57 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.69 -16.45 5.50 -47.23 -0.26 -16.71 16 10 C 0.13 2.45 2.17 -131.82 -0.29 2.16 16 11 C 0.15 2.69 5.72 -4.04 -0.02 2.66 16 12 N -0.71 -11.25 5.52 -60.29 -0.33 -11.58 16 13 C 0.51 7.97 7.59 -10.99 -0.08 7.89 16 14 O -0.55 -10.44 14.07 5.55 0.08 -10.36 16 15 C -0.14 -1.58 5.18 -27.89 -0.14 -1.72 16 16 C -0.07 -0.81 1.86 -90.41 -0.17 -0.98 16 17 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 18 C -0.09 -1.10 5.05 -28.18 -0.14 -1.24 16 19 C -0.14 -1.57 9.80 -35.90 -0.35 -1.92 16 20 C -0.17 -1.69 9.80 -35.90 -0.35 -2.04 16 21 C -0.09 -0.82 6.12 -28.18 -0.17 -0.99 16 22 C -0.12 -1.10 5.31 -26.52 -0.14 -1.24 16 23 C -0.19 -3.23 10.10 -26.73 -0.27 -3.50 16 24 C -0.19 -2.89 10.07 -26.73 -0.27 -3.16 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.39 9.81 8.03 -40.82 -0.33 9.48 16 27 H 0.06 0.95 7.94 -51.92 -0.41 0.53 16 28 H 0.08 1.69 7.76 -51.93 -0.40 1.28 16 29 H 0.40 5.60 8.41 -40.82 -0.34 5.26 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 32 H 0.09 1.32 6.27 -51.93 -0.33 0.99 16 33 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 41 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -30.60 350.84 -9.43 -40.03 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -7.26 Total: 13.71 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.64 Total: -11.02 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.13 Total: -54.95 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.60 -9.43 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323515914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.992 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds