Wall clock time and date at job start Tue Mar 31 2020 00:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47278 * 270.00531 * 3 2 1 5 5 H 1.48500 * 109.46856 * 30.00545 * 3 2 1 6 6 H 1.48504 * 109.46872 * 150.00188 * 3 2 1 7 7 C 1.38811 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99834 * 177.30793 * 9 7 2 11 11 C 1.52999 * 115.54810 * 295.38304 * 10 9 7 12 12 N 1.46503 * 109.47510 * 279.53878 * 11 10 9 13 13 C 1.34772 * 120.00580 * 176.08214 * 12 11 10 14 14 O 1.21286 * 119.99800 * 0.02562 * 13 12 11 15 15 C 1.50691 * 120.00220 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47162 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.64158 * 305.00009 * 16 15 13 18 18 C 1.53018 * 109.81864 * 65.53331 * 16 15 13 19 19 C 1.50063 * 110.15141 * 169.22743 * 18 16 15 20 20 C 1.29445 * 124.07099 * 342.86025 * 19 18 16 21 21 C 1.50069 * 124.07977 * 0.47705 * 20 19 18 22 22 C 1.53023 * 110.14239 * 342.86757 * 21 20 19 23 23 C 1.52996 * 117.52251 * 81.08578 * 10 9 7 24 24 C 1.52999 * 60.00236 * 107.48010 * 23 10 9 25 25 H 0.97006 * 119.99678 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00151 * 357.30894 * 9 7 2 27 27 H 1.09008 * 109.47374 * 159.54272 * 11 10 9 28 28 H 1.08998 * 109.47494 * 39.54439 * 11 10 9 29 29 H 0.97003 * 119.99276 * 356.08879 * 12 11 10 30 30 H 1.08998 * 109.47107 * 60.00441 * 15 13 12 31 31 H 1.09002 * 109.47603 * 300.00432 * 15 13 12 32 32 H 1.09004 * 109.35670 * 289.43105 * 18 16 15 33 33 H 1.08999 * 109.36082 * 49.00943 * 18 16 15 34 34 H 1.07995 * 117.96538 * 162.84594 * 19 18 16 35 35 H 1.08001 * 117.95959 * 180.44824 * 20 19 18 36 36 H 1.08994 * 109.35753 * 222.66007 * 21 20 19 37 37 H 1.08998 * 109.24482 * 102.99723 * 21 20 19 38 38 H 1.09003 * 109.64026 * 289.74752 * 22 21 20 39 39 H 1.08998 * 109.63976 * 169.12516 * 22 21 20 40 40 H 1.08995 * 117.50246 * 214.97391 * 23 10 9 41 41 H 1.09005 * 117.49411 * 359.97438 * 23 10 9 42 42 H 1.08997 * 117.49846 * 252.51269 * 24 23 10 43 43 H 1.08997 * 117.49535 * 107.49182 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0567 -3.6561 -0.0607 11 6 2.8470 -3.9016 -1.3475 12 7 1.9401 -4.3798 -2.3940 13 6 2.4021 -4.5883 -3.6428 14 8 3.5690 -4.3805 -3.9001 15 6 1.4691 -5.0796 -4.7192 16 6 2.2403 -5.2326 -6.0318 17 1 2.7309 -4.2915 -6.2804 18 6 3.2889 -6.3381 -5.8915 19 6 3.8669 -6.6759 -7.2345 20 6 3.3184 -6.3537 -8.3619 21 6 2.0333 -5.5883 -8.4834 22 6 1.2723 -5.6221 -7.1562 23 6 2.6466 -4.1946 1.2442 24 6 1.4230 -4.8701 0.6217 25 1 -0.4850 0.8401 0.0004 26 1 0.3563 -2.3885 0.0393 27 1 3.6169 -4.6511 -1.1638 28 1 3.3151 -2.9714 -1.6696 29 1 1.0069 -4.5462 -2.1881 30 1 0.6602 -4.3616 -4.8544 31 1 1.0537 -6.0442 -4.4277 32 1 4.0861 -5.9981 -5.2304 33 1 2.8229 -7.2263 -5.4649 34 1 4.7984 -7.2216 -7.2623 35 1 3.8169 -6.6539 -9.2717 36 1 1.4184 -6.0363 -9.2640 37 1 2.2546 -4.5540 -8.7467 38 1 0.8899 -6.6273 -6.9787 39 1 0.4453 -4.9129 -7.1899 40 1 3.5977 -4.7237 1.1860 41 1 2.4910 -3.6051 2.1478 42 1 0.4624 -4.7252 1.1158 43 1 1.5693 -5.8437 0.1539 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323515914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:47 Heat of formation + Delta-G solvation = -23.942967 kcal Electronic energy + Delta-G solvation = -21550.085730 eV Core-core repulsion = 18401.836327 eV Total energy + Delta-G solvation = -3148.249403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.00484 -39.44102 -38.65500 -35.27533 -34.76064 -33.67813 -31.65457 -31.57855 -29.21884 -26.88691 -25.93158 -24.06270 -23.29365 -22.29485 -21.13723 -20.51594 -19.14961 -18.84725 -17.96071 -17.23672 -16.87145 -16.50368 -16.28963 -15.86459 -15.55604 -15.12502 -15.01026 -14.71305 -14.38328 -13.87611 -13.76319 -13.56377 -13.36390 -13.16699 -12.94773 -12.89211 -12.85951 -12.41111 -12.28682 -12.20978 -11.89164 -11.71648 -11.60796 -11.47302 -11.00528 -10.95634 -10.89089 -10.45850 -9.95572 -9.79193 -9.03420 -7.97831 -5.25836 1.44222 1.45303 1.45737 1.53261 1.76924 2.29673 2.51723 3.10274 3.37622 3.66359 3.73323 3.81034 3.86608 3.89944 4.15479 4.20333 4.30509 4.32740 4.45084 4.51495 4.59982 4.73699 4.79632 4.81904 4.82698 4.85641 4.94146 5.00028 5.05394 5.06930 5.12486 5.20759 5.26474 5.38982 5.41617 5.52766 5.53020 5.59731 5.82613 6.12050 6.25555 6.70880 7.31721 7.39226 8.05589 8.28811 9.24617 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.003806 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.321549 B = 7354.623681 C = 8110.936338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.963 3.037 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.231 4.231 8 H 0.067 0.933 9 N -0.699 5.699 10 C 0.100 3.900 11 C 0.159 3.841 12 N -0.709 5.709 13 C 0.502 3.498 14 O -0.587 6.587 15 C -0.128 4.128 16 C -0.069 4.069 17 H 0.050 0.950 18 C -0.089 4.089 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.093 4.093 22 C -0.111 4.111 23 C -0.188 4.188 24 C -0.151 4.151 25 H 0.251 0.749 26 H 0.378 0.622 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.410 0.590 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -16.924 -12.050 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.792 3.208 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.363 4.363 8 H 0.085 0.915 9 N -0.338 5.338 10 C 0.007 3.993 11 C 0.033 3.967 12 N -0.359 5.359 13 C 0.290 3.710 14 O -0.468 6.468 15 C -0.168 4.168 16 C -0.088 4.088 17 H 0.068 0.932 18 C -0.126 4.126 19 C -0.183 4.183 20 C -0.182 4.182 21 C -0.130 4.130 22 C -0.149 4.149 23 C -0.228 4.228 24 C -0.188 4.188 25 H 0.060 0.940 26 H 0.211 0.789 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.245 0.755 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.816 -16.623 -12.219 20.711 hybrid contribution -0.044 1.412 0.395 1.466 sum 1.772 -15.212 -11.824 19.348 Atomic orbital electron populations 1.69778 1.06203 1.25969 1.59458 1.25407 0.96313 1.00529 1.03803 0.85297 0.77919 0.80313 0.77223 1.21954 1.21887 1.19732 1.19403 0.91119 0.84955 1.40780 0.91460 1.41825 1.04990 0.99473 1.87472 1.20360 1.00263 0.87141 0.91507 1.20911 0.91640 0.97613 0.86527 1.45918 1.13995 1.66635 1.09353 1.21405 0.89076 0.76749 0.83726 1.90635 1.20238 1.53777 1.82153 1.21793 0.97927 1.04635 0.92410 1.20897 0.95833 0.98469 0.93628 0.93169 1.20544 0.98572 0.98034 0.95444 1.22177 1.00107 1.01385 0.94658 1.22248 0.98116 1.00027 0.97784 1.20504 0.94433 0.99866 0.98215 1.21669 0.97314 1.02659 0.93212 1.23379 0.98048 1.03880 0.97482 1.23146 0.97323 0.95712 1.02627 0.93998 0.78872 0.91253 0.94766 0.75483 0.87500 0.86013 0.92092 0.90321 0.87924 0.87062 0.89286 0.91333 0.90422 0.90438 0.87610 0.90379 0.88922 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.57 13.06 21.65 0.28 -57.29 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 46.59 29.55 68.60 2.03 48.62 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.23 -12.65 9.53 84.03 0.80 -11.85 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.70 -33.56 5.50 -303.35 -1.67 -35.23 16 10 C 0.10 3.67 2.17 3.60 0.01 3.68 16 11 C 0.16 5.76 5.72 86.38 0.49 6.26 16 12 N -0.71 -21.66 5.52 -463.06 -2.55 -24.21 16 13 C 0.50 15.47 7.59 87.65 0.67 16.14 16 14 O -0.59 -22.87 14.07 -3.05 -0.04 -22.92 16 15 C -0.13 -2.70 5.18 29.85 0.15 -2.55 16 16 C -0.07 -1.54 1.86 -10.65 -0.02 -1.56 16 17 H 0.05 1.42 7.94 -2.39 -0.02 1.40 16 18 C -0.09 -2.06 5.05 29.65 0.15 -1.91 16 19 C -0.17 -3.47 9.80 27.03 0.27 -3.20 16 20 C -0.16 -3.00 9.80 27.04 0.27 -2.74 16 21 C -0.09 -1.50 6.12 29.66 0.18 -1.32 16 22 C -0.11 -1.81 5.31 30.73 0.16 -1.65 16 23 C -0.19 -6.06 10.10 30.59 0.31 -5.75 16 24 C -0.15 -4.23 10.07 30.60 0.31 -3.92 16 25 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 26 H 0.38 19.30 8.03 -92.71 -0.74 18.56 16 27 H 0.07 2.30 7.94 -2.38 -0.02 2.28 16 28 H 0.03 1.53 7.76 -2.39 -0.02 1.51 16 29 H 0.41 10.74 8.41 -92.71 -0.78 9.96 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.12 1.82 8.11 -2.39 -0.02 1.80 16 32 H 0.06 1.79 6.27 -2.38 -0.01 1.78 16 33 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 2.92 8.08 -2.39 -0.02 2.90 16 41 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -67.96 350.84 1.73 -66.24 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.53 Total: 38.56 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.21 Total: -13.77 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -3.94 Total: -116.73 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -67.96 1.73 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323515914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.295 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds