Wall clock time and date at job start Tue Mar 31 2020 00:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48496 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47380 * 300.00568 * 3 2 1 6 6 H 1.48505 * 109.46845 * 60.00218 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99671 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.52427 * 300.08069 * 9 7 2 11 11 C 1.53044 * 109.49802 * 180.02562 * 9 7 2 12 12 C 1.53036 * 109.52713 * 178.67389 * 11 9 7 13 13 C 1.53198 * 109.31241 * 61.37449 * 12 11 9 14 14 N 1.46927 * 108.77188 * 305.36270 * 13 12 11 15 15 C 1.34776 * 120.62851 * 233.58720 * 14 13 12 16 16 O 1.21588 * 119.99943 * 174.77192 * 15 14 13 17 17 N 1.34778 * 120.00249 * 354.77798 * 15 14 13 18 18 C 1.46502 * 119.99805 * 184.98114 * 17 15 14 19 19 H 1.08996 * 109.35693 * 34.99983 * 18 17 15 20 20 C 1.50061 * 109.35790 * 275.26846 * 18 17 15 21 21 C 1.29437 * 124.07945 * 222.64546 * 20 18 17 22 22 C 1.50070 * 124.07731 * 0.48807 * 21 20 18 23 23 C 1.53032 * 110.14178 * 342.87376 * 22 21 20 24 24 C 1.53026 * 109.35494 * 154.71966 * 18 17 15 25 25 C 1.46925 * 118.73834 * 53.60753 * 14 13 12 26 26 H 0.97006 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.45886 * 58.65899 * 11 9 7 28 28 H 1.08997 * 109.45834 * 298.68739 * 11 9 7 29 29 H 1.08999 * 109.49888 * 181.32121 * 12 11 9 30 30 H 1.08998 * 109.50090 * 301.42012 * 12 11 9 31 31 H 1.08998 * 109.58764 * 65.14523 * 13 12 11 32 32 H 1.08999 * 109.58756 * 185.43864 * 13 12 11 33 33 H 0.96999 * 119.99920 * 4.97113 * 17 15 14 34 34 H 1.08004 * 117.96110 * 42.66600 * 20 18 17 35 35 H 1.08006 * 117.96419 * 180.47554 * 21 20 18 36 36 H 1.08995 * 109.35620 * 103.07871 * 22 21 20 37 37 H 1.08998 * 109.36354 * 222.80554 * 22 21 20 38 38 H 1.09000 * 109.63880 * 169.11708 * 23 22 21 39 39 H 1.08998 * 109.64112 * 289.53316 * 23 22 21 40 40 H 1.08999 * 109.64484 * 289.32707 * 24 18 17 41 41 H 1.09005 * 109.64111 * 49.95551 * 24 18 17 42 42 H 1.08997 * 109.58853 * 66.18526 * 25 14 13 43 43 H 1.09005 * 109.58254 * 186.45939 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6232 -2.5573 0.8887 11 6 2.2449 -3.6629 -0.0005 12 6 1.4806 -4.9883 0.0328 13 6 0.6053 -5.1001 -1.2195 14 7 -0.2530 -3.9106 -1.3041 15 6 -1.5894 -4.0355 -1.4266 16 8 -2.2972 -3.0472 -1.4001 17 7 -2.1412 -5.2557 -1.5783 18 6 -3.5803 -5.3838 -1.8206 19 1 -3.9194 -4.5481 -2.4326 20 6 -4.3089 -5.3678 -0.5088 21 6 -5.2902 -6.1589 -0.2144 22 6 -5.8295 -7.2100 -1.1398 23 6 -5.3700 -6.9359 -2.5735 24 6 -3.8557 -6.6966 -2.5571 25 6 0.3733 -2.5825 -1.2533 26 1 -0.4850 0.8401 0.0004 27 1 2.8872 -3.5918 0.8772 28 1 2.8558 -3.6186 -0.9021 29 1 2.1891 -5.8163 0.0565 30 1 0.8504 -5.0227 0.9215 31 1 1.2391 -5.1571 -2.1044 32 1 -0.0130 -5.9954 -1.1544 33 1 -1.5854 -6.0491 -1.5272 34 1 -3.9953 -4.6512 0.2359 35 1 -5.7492 -6.0564 0.7579 36 1 -5.4673 -8.1887 -0.8252 37 1 -6.9189 -7.1991 -1.1034 38 1 -5.5987 -7.7963 -3.2024 39 1 -5.8809 -6.0538 -2.9597 40 1 -3.4870 -6.6269 -3.5805 41 1 -3.3588 -7.5178 -2.0405 42 1 0.9881 -2.4342 -2.1410 43 1 -0.4000 -1.8153 -1.2120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350380547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:57 Heat of formation + Delta-G solvation = -23.542404 kcal Electronic energy + Delta-G solvation = -22366.182641 eV Core-core repulsion = 19217.950608 eV Total energy + Delta-G solvation = -3148.232033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.93397 -38.36807 -36.59640 -33.95019 -33.11857 -31.69669 -31.09347 -29.81512 -28.86590 -25.04017 -24.52432 -22.68359 -22.42479 -21.76251 -19.97221 -18.83875 -18.00419 -17.44524 -16.47786 -16.05263 -15.57785 -14.73521 -14.53194 -14.30806 -13.74404 -13.63519 -13.61571 -13.18096 -12.84150 -12.75818 -12.67484 -12.55893 -12.27504 -12.02953 -11.87689 -11.27243 -10.97335 -10.87093 -10.74095 -10.45762 -10.41799 -10.35922 -10.19584 -9.83958 -9.39127 -9.05809 -9.02801 -8.89072 -8.70490 -8.38384 -7.59535 -5.94304 -4.03620 2.28089 3.31439 3.37602 3.41453 3.44324 3.88826 4.40699 4.49208 4.64807 4.67376 4.86379 5.10554 5.30116 5.32025 5.35403 5.41729 5.46374 5.53496 5.53716 5.64468 5.73960 5.76896 5.88856 6.00355 6.12483 6.19592 6.25893 6.34580 6.62356 6.64369 6.70840 6.81505 6.84970 7.02431 7.06306 7.09904 7.40034 7.56189 7.79553 7.97673 8.10959 8.45280 8.64932 9.00400 9.32056 9.61883 11.10578 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.004242 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.007216 B = 6598.595486 C = 7223.354468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.109 4.109 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.699 3.301 16 O -0.581 6.581 17 N -0.751 5.751 18 C 0.194 3.806 19 H 0.094 0.906 20 C -0.148 4.148 21 C -0.164 4.164 22 C -0.090 4.090 23 C -0.117 4.117 24 C -0.125 4.125 25 C 0.129 3.871 26 H 0.262 0.738 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.390 0.610 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.811 -16.842 -4.199 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.401 3.599 16 O -0.458 6.458 17 N -0.409 5.409 18 C 0.089 3.911 19 H 0.111 0.889 20 C -0.167 4.167 21 C -0.183 4.183 22 C -0.127 4.127 23 C -0.155 4.155 24 C -0.163 4.163 25 C 0.009 3.991 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.226 0.774 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.464 -15.932 -4.207 18.090 hybrid contribution 0.783 0.535 0.241 0.978 sum -6.681 -15.397 -3.966 17.246 Atomic orbital electron populations 1.69919 1.05685 1.26639 1.49288 1.25060 0.94861 0.99212 0.94913 0.86559 0.80040 0.83932 0.77605 1.19819 1.20988 1.21053 1.21113 0.92890 0.90158 1.51821 0.92372 1.18985 0.92623 0.92168 0.94251 0.95358 1.21610 0.98525 0.94098 1.00469 1.21947 0.98593 0.99116 0.97528 1.21475 0.93352 0.87556 0.98449 1.47783 1.03559 1.08804 1.75816 1.15997 0.82570 0.83239 0.78137 1.90931 1.60380 1.36663 1.57815 1.45421 1.08195 1.07369 1.79925 1.19494 0.79754 0.98121 0.93729 0.88852 1.22613 0.96630 0.98748 0.98750 1.21993 0.98812 0.97736 0.99797 1.20455 1.00350 0.97848 0.94000 1.21564 0.95164 1.02036 0.96706 1.21842 0.96889 0.96848 1.00690 1.22162 0.98290 0.80626 0.98067 0.92748 0.93114 0.93224 0.92380 0.92233 0.92235 0.92186 0.77415 0.87422 0.88073 0.91114 0.91256 0.91384 0.91325 0.91071 0.91328 0.94350 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 11.40 55.43 0.63 -25.47 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.31 8.56 -34.44 -0.29 -14.61 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 12 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 13 C 0.12 1.82 6.38 -3.71 -0.02 1.79 16 14 N -0.62 -12.81 2.97 -178.50 -0.53 -13.34 16 15 C 0.70 14.59 8.24 -86.92 -0.72 13.87 16 16 O -0.58 -14.87 15.47 5.29 0.08 -14.79 16 17 N -0.75 -11.59 4.96 -60.11 -0.30 -11.89 16 18 C 0.19 2.70 2.67 -69.38 -0.19 2.51 16 19 H 0.09 1.50 7.65 -51.93 -0.40 1.10 16 20 C -0.15 -2.09 9.32 -35.90 -0.33 -2.43 16 21 C -0.16 -1.89 9.80 -35.90 -0.35 -2.24 16 22 C -0.09 -0.79 6.11 -28.17 -0.17 -0.96 16 23 C -0.12 -1.00 6.01 -26.55 -0.16 -1.16 16 24 C -0.12 -1.23 5.46 -26.55 -0.15 -1.37 16 25 C 0.13 3.20 5.41 -3.71 -0.02 3.18 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.75 5.65 -51.93 -0.29 0.45 16 33 H 0.39 4.92 6.08 -40.82 -0.25 4.68 16 34 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.10 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.12 3.57 5.13 -51.93 -0.27 3.30 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -32.10 334.86 -10.18 -42.28 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.09 Total: 5.34 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.00 Total: -3.65 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.20 Total: -50.70 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.10 -10.18 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350380547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.738 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds