Wall clock time and date at job start Tue Mar 31 2020 00:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48496 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47380 * 300.00568 * 3 2 1 6 6 H 1.48505 * 109.46845 * 60.00218 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99671 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.52427 * 300.08069 * 9 7 2 11 11 C 1.53044 * 109.49802 * 180.02562 * 9 7 2 12 12 C 1.53036 * 109.52713 * 178.67389 * 11 9 7 13 13 C 1.53198 * 109.31241 * 61.37449 * 12 11 9 14 14 N 1.46927 * 108.77188 * 305.36270 * 13 12 11 15 15 C 1.34776 * 120.62851 * 233.58720 * 14 13 12 16 16 O 1.21588 * 119.99943 * 174.77192 * 15 14 13 17 17 N 1.34778 * 120.00249 * 354.77798 * 15 14 13 18 18 C 1.46502 * 119.99805 * 184.98114 * 17 15 14 19 19 H 1.08996 * 109.35693 * 34.99983 * 18 17 15 20 20 C 1.50061 * 109.35790 * 275.26846 * 18 17 15 21 21 C 1.29437 * 124.07945 * 222.64546 * 20 18 17 22 22 C 1.50070 * 124.07731 * 0.48807 * 21 20 18 23 23 C 1.53032 * 110.14178 * 342.87376 * 22 21 20 24 24 C 1.53026 * 109.35494 * 154.71966 * 18 17 15 25 25 C 1.46925 * 118.73834 * 53.60753 * 14 13 12 26 26 H 0.97006 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.45886 * 58.65899 * 11 9 7 28 28 H 1.08997 * 109.45834 * 298.68739 * 11 9 7 29 29 H 1.08999 * 109.49888 * 181.32121 * 12 11 9 30 30 H 1.08998 * 109.50090 * 301.42012 * 12 11 9 31 31 H 1.08998 * 109.58764 * 65.14523 * 13 12 11 32 32 H 1.08999 * 109.58756 * 185.43864 * 13 12 11 33 33 H 0.96999 * 119.99920 * 4.97113 * 17 15 14 34 34 H 1.08004 * 117.96110 * 42.66600 * 20 18 17 35 35 H 1.08006 * 117.96419 * 180.47554 * 21 20 18 36 36 H 1.08995 * 109.35620 * 103.07871 * 22 21 20 37 37 H 1.08998 * 109.36354 * 222.80554 * 22 21 20 38 38 H 1.09000 * 109.63880 * 169.11708 * 23 22 21 39 39 H 1.08998 * 109.64112 * 289.53316 * 23 22 21 40 40 H 1.08999 * 109.64484 * 289.32707 * 24 18 17 41 41 H 1.09005 * 109.64111 * 49.95551 * 24 18 17 42 42 H 1.08997 * 109.58853 * 66.18526 * 25 14 13 43 43 H 1.09005 * 109.58254 * 186.45939 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6232 -2.5573 0.8887 11 6 2.2449 -3.6629 -0.0005 12 6 1.4806 -4.9883 0.0328 13 6 0.6053 -5.1001 -1.2195 14 7 -0.2530 -3.9106 -1.3041 15 6 -1.5894 -4.0355 -1.4266 16 8 -2.2972 -3.0472 -1.4001 17 7 -2.1412 -5.2557 -1.5783 18 6 -3.5803 -5.3838 -1.8206 19 1 -3.9194 -4.5481 -2.4326 20 6 -4.3089 -5.3678 -0.5088 21 6 -5.2902 -6.1589 -0.2144 22 6 -5.8295 -7.2100 -1.1398 23 6 -5.3700 -6.9359 -2.5735 24 6 -3.8557 -6.6966 -2.5571 25 6 0.3733 -2.5825 -1.2533 26 1 -0.4850 0.8401 0.0004 27 1 2.8872 -3.5918 0.8772 28 1 2.8558 -3.6186 -0.9021 29 1 2.1891 -5.8163 0.0565 30 1 0.8504 -5.0227 0.9215 31 1 1.2391 -5.1571 -2.1044 32 1 -0.0130 -5.9954 -1.1544 33 1 -1.5854 -6.0491 -1.5272 34 1 -3.9953 -4.6512 0.2359 35 1 -5.7492 -6.0564 0.7579 36 1 -5.4673 -8.1887 -0.8252 37 1 -6.9189 -7.1991 -1.1034 38 1 -5.5987 -7.7963 -3.2024 39 1 -5.8809 -6.0538 -2.9597 40 1 -3.4870 -6.6269 -3.5805 41 1 -3.3588 -7.5178 -2.0405 42 1 0.9881 -2.4342 -2.1410 43 1 -0.4000 -1.8153 -1.2120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350380547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:56 Heat of formation + Delta-G solvation = -43.786697 kcal Electronic energy + Delta-G solvation = -22367.060499 eV Core-core repulsion = 19217.950608 eV Total energy + Delta-G solvation = -3149.109892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42939 -39.52964 -38.20097 -35.56420 -34.84682 -33.37988 -31.97956 -31.55394 -30.02592 -27.02375 -26.07175 -23.83186 -23.41984 -23.26386 -21.62057 -20.39652 -19.27537 -18.74559 -18.22687 -17.56778 -16.88280 -16.51505 -16.18440 -15.57340 -15.23317 -15.16523 -14.74369 -14.51661 -14.35878 -14.25175 -13.83943 -13.69026 -13.53043 -13.46767 -13.18179 -12.91243 -12.66517 -12.28625 -12.21326 -12.09119 -11.82224 -11.63844 -11.53583 -11.33268 -11.19709 -10.95289 -10.80896 -10.53056 -10.15301 -9.99582 -9.25886 -8.09877 -6.28061 1.21750 1.39674 1.40699 1.53284 1.91856 2.25274 2.41948 3.07511 3.20001 3.74833 3.82326 4.01220 4.10624 4.16176 4.24630 4.28358 4.43717 4.50298 4.60028 4.64320 4.73378 4.76137 4.80750 4.84536 4.94547 5.06006 5.10124 5.14992 5.26101 5.27186 5.31069 5.35032 5.40877 5.54619 5.56631 5.66260 5.71020 5.88952 5.96310 6.02384 6.18896 6.36275 6.85974 7.16225 7.42322 7.71259 8.93423 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.004242 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.007216 B = 6598.595486 C = 7223.354468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.037 3.963 10 H -0.019 1.019 11 C -0.104 4.104 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.628 5.628 15 C 0.691 3.309 16 O -0.640 6.640 17 N -0.727 5.727 18 C 0.194 3.806 19 H 0.060 0.940 20 C -0.186 4.186 21 C -0.133 4.133 22 C -0.090 4.090 23 C -0.116 4.116 24 C -0.114 4.114 25 C 0.143 3.857 26 H 0.258 0.742 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.408 0.592 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 -20.466 -5.084 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.018 3.982 10 H -0.001 1.001 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.364 5.364 15 C 0.393 3.607 16 O -0.522 6.522 17 N -0.385 5.385 18 C 0.089 3.911 19 H 0.078 0.922 20 C -0.206 4.206 21 C -0.152 4.152 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.152 4.152 25 C 0.020 3.980 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.247 0.753 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.785 -19.646 -5.093 21.399 hybrid contribution 0.504 1.615 0.573 1.786 sum -6.281 -18.031 -4.520 19.621 Atomic orbital electron populations 1.70138 1.07550 1.27110 1.50693 1.25940 0.95521 1.03085 0.94617 0.85486 0.79330 0.79335 0.77402 1.18207 1.20818 1.20946 1.21562 0.93318 0.91475 1.51013 0.91818 1.18921 0.93101 0.93937 0.92249 1.00058 1.21497 0.97579 0.94109 1.00967 1.21912 0.98978 0.98326 0.97196 1.21861 0.93557 0.86637 0.99155 1.47688 1.04089 1.08944 1.75689 1.16278 0.82459 0.84110 0.77871 1.90886 1.61836 1.39183 1.60287 1.45207 1.09233 1.05903 1.78202 1.19637 0.78283 0.99581 0.93625 0.92239 1.22331 0.99528 1.00217 0.98531 1.22329 0.96169 0.96327 1.00370 1.20579 1.01419 0.97406 0.93216 1.21608 0.93771 1.02888 0.97083 1.21835 0.98335 0.94432 1.00627 1.21553 0.96705 0.82062 0.97647 0.93256 0.93053 0.92191 0.87554 0.93618 0.89962 0.88239 0.75326 0.91925 0.87498 0.88750 0.89364 0.88335 0.92382 0.90091 0.89345 0.94620 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.86 11.40 21.45 0.24 -57.62 16 2 C 0.01 0.44 5.30 84.65 0.45 0.89 16 3 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.54 -30.27 8.56 25.60 0.22 -30.05 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.04 1.95 2.25 -11.46 -0.03 1.93 16 10 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 11 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 12 C -0.13 -3.79 6.08 30.67 0.19 -3.60 16 13 C 0.11 3.17 6.38 86.36 0.55 3.72 16 14 N -0.63 -26.37 2.97 -836.91 -2.49 -28.86 16 15 C 0.69 30.21 8.24 179.05 1.48 31.68 16 16 O -0.64 -35.62 15.47 -3.99 -0.06 -35.69 16 17 N -0.73 -22.40 4.96 -462.33 -2.29 -24.69 16 18 C 0.19 5.43 2.67 44.05 0.12 5.55 16 19 H 0.06 2.06 7.65 -2.39 -0.02 2.04 16 20 C -0.19 -5.47 9.32 27.04 0.25 -5.22 16 21 C -0.13 -2.88 9.80 27.04 0.27 -2.62 16 22 C -0.09 -1.24 6.11 29.66 0.18 -1.06 16 23 C -0.12 -1.59 6.01 30.71 0.18 -1.41 16 24 C -0.11 -1.94 5.46 30.71 0.17 -1.77 16 25 C 0.14 7.47 5.41 86.36 0.47 7.94 16 26 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.10 2.08 5.65 -2.39 -0.01 2.06 16 33 H 0.41 9.33 6.08 -92.71 -0.56 8.77 16 34 H 0.06 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.11 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.19 8.11 -2.38 -0.02 1.17 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 4.59 5.13 -2.38 -0.01 4.58 16 Total: -1.00 -78.72 334.86 2.50 -76.23 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.42 Total: 21.21 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.65 Total: 2.04 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.54 Total: -111.17 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.06 Total: -35.69 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.72 2.50 -76.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350380547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.441 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds