Wall clock time and date at job start Tue Mar 31 2020 00:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99902 * 2 1 4 4 H 1.48498 * 109.46881 * 274.98753 * 3 2 1 5 5 H 1.48499 * 109.46994 * 34.99218 * 3 2 1 6 6 H 1.48501 * 109.46525 * 154.99147 * 3 2 1 7 7 C 1.37876 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00092 * 189.49524 * 7 2 1 9 9 C 1.50700 * 119.99796 * 9.49305 * 7 2 1 10 10 H 1.08999 * 109.50071 * 305.46239 * 9 7 2 11 11 C 1.53038 * 109.49821 * 185.39959 * 9 7 2 12 12 C 1.53040 * 109.54046 * 178.68091 * 11 9 7 13 13 C 1.53193 * 109.33617 * 61.35218 * 12 11 9 14 14 N 1.46932 * 108.77144 * 305.41436 * 13 12 11 15 15 C 1.34779 * 120.60363 * 233.53892 * 14 13 12 16 16 O 1.21592 * 119.99978 * 174.91762 * 15 14 13 17 17 N 1.34776 * 120.00253 * 354.91589 * 15 14 13 18 18 C 1.46501 * 120.00262 * 184.97557 * 17 15 14 19 19 H 1.08996 * 109.35340 * 325.27843 * 18 17 15 20 20 C 1.50066 * 109.35781 * 84.99846 * 18 17 15 21 21 C 1.29447 * 124.07219 * 137.36183 * 20 18 17 22 22 C 1.50060 * 124.07634 * 359.50724 * 21 20 18 23 23 C 1.53024 * 110.14709 * 17.13316 * 22 21 20 24 24 C 1.53023 * 109.35603 * 205.69051 * 18 17 15 25 25 C 1.46921 * 118.76612 * 53.55473 * 14 13 12 26 26 H 0.97007 * 120.00167 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46174 * 58.65939 * 11 9 7 28 28 H 1.09004 * 109.46311 * 298.70344 * 11 9 7 29 29 H 1.09001 * 109.49862 * 181.31291 * 12 11 9 30 30 H 1.08993 * 109.49995 * 301.38396 * 12 11 9 31 31 H 1.09002 * 109.58863 * 65.16627 * 13 12 11 32 32 H 1.09000 * 109.58511 * 185.59233 * 13 12 11 33 33 H 0.97007 * 119.99568 * 4.97410 * 17 15 14 34 34 H 1.07999 * 117.96605 * 317.34307 * 20 18 17 35 35 H 1.08000 * 117.95506 * 179.53460 * 21 20 18 36 36 H 1.09000 * 109.35854 * 137.34309 * 22 21 20 37 37 H 1.09002 * 109.36044 * 257.06187 * 22 21 20 38 38 H 1.08992 * 109.64103 * 70.25029 * 23 22 21 39 39 H 1.09002 * 109.64195 * 190.66539 * 23 22 21 40 40 H 1.08997 * 109.64265 * 310.03617 * 24 18 17 41 41 H 1.08993 * 109.64341 * 70.67125 * 24 18 17 42 42 H 1.09008 * 109.59117 * 186.62896 * 25 14 13 43 43 H 1.09002 * 109.70398 * 66.27223 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6200 0.8029 6 1 3.5954 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0734 -1.2005 0.1538 9 6 1.2665 -2.4901 -0.2164 10 1 0.4560 -2.5723 0.5079 11 6 2.2322 -3.6637 -0.0375 12 6 1.4765 -4.9814 -0.2241 13 6 0.9018 -5.0401 -1.6429 14 7 0.0876 -3.8389 -1.8734 15 6 -1.1879 -3.9451 -2.2955 16 8 -1.8805 -2.9506 -2.3941 17 7 -1.6958 -5.1537 -2.6083 18 6 -3.0448 -5.2583 -3.1701 19 1 -3.6803 -4.4906 -2.7290 20 6 -2.9816 -5.0583 -4.6561 21 6 -3.6388 -5.7727 -5.5125 22 6 -4.5474 -6.9073 -5.1398 23 6 -4.9130 -6.8242 -3.6562 24 6 -3.6227 -6.6381 -2.8480 25 6 0.6900 -2.5201 -1.6354 26 1 -0.4851 0.8401 0.0004 27 1 2.6627 -3.6306 0.9634 28 1 3.0292 -3.5943 -0.7778 29 1 2.1599 -5.8172 -0.0736 30 1 0.6642 -5.0407 0.5002 31 1 1.7167 -5.0729 -2.3662 32 1 0.2804 -5.9293 -1.7490 33 1 -1.1681 -5.9543 -2.4615 34 1 -2.3488 -4.2692 -5.0345 35 1 -3.5258 -5.5376 -6.5605 36 1 -5.4562 -6.8544 -5.7393 37 1 -4.0419 -7.8535 -5.3328 38 1 -5.5755 -5.9750 -3.4891 39 1 -5.4117 -7.7437 -3.3496 40 1 -2.9037 -7.4098 -3.1228 41 1 -3.8450 -6.7027 -1.7829 42 1 -0.0716 -1.7468 -1.7368 43 1 1.4874 -2.3446 -2.3575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350380549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:59 Heat of formation + Delta-G solvation = -45.125992 kcal Electronic energy + Delta-G solvation = -22314.590586 eV Core-core repulsion = 19165.422618 eV Total energy + Delta-G solvation = -3149.167968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45494 -39.53399 -38.21309 -35.56240 -34.85421 -33.37515 -31.98721 -31.62941 -30.03285 -27.00175 -26.10087 -23.83433 -23.44804 -23.28008 -21.63448 -20.38196 -19.36662 -18.65673 -18.26125 -17.59875 -16.83229 -16.60453 -16.22120 -15.55148 -15.24133 -15.18158 -14.75381 -14.55596 -14.35155 -14.25223 -13.82229 -13.67694 -13.56442 -13.48201 -13.21693 -12.87536 -12.74500 -12.33923 -12.22829 -12.09348 -11.82468 -11.63617 -11.54561 -11.34589 -11.26526 -10.93511 -10.79658 -10.51380 -10.16358 -9.99824 -9.28811 -8.14118 -6.26588 1.21431 1.39316 1.41096 1.51669 1.89066 2.22714 2.41923 3.05488 3.18395 3.73781 3.81864 4.00915 4.09814 4.15779 4.24223 4.27309 4.43479 4.50264 4.58223 4.63599 4.73177 4.75313 4.79461 4.83256 4.93371 5.05250 5.09213 5.14520 5.20978 5.26456 5.30095 5.33280 5.39603 5.54155 5.57577 5.63528 5.70120 5.87232 5.93914 5.99014 6.14580 6.34988 6.87767 7.13102 7.42295 7.67981 8.92981 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.004193 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.175419 B = 6676.000300 C = 7323.437138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.037 3.963 10 H -0.012 1.012 11 C -0.104 4.104 12 C -0.126 4.126 13 C 0.111 3.889 14 N -0.628 5.628 15 C 0.692 3.308 16 O -0.643 6.643 17 N -0.726 5.726 18 C 0.190 3.810 19 H 0.057 0.943 20 C -0.186 4.186 21 C -0.130 4.130 22 C -0.090 4.090 23 C -0.116 4.116 24 C -0.116 4.116 25 C 0.150 3.850 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.408 0.592 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -20.276 -8.541 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.018 3.982 10 H 0.006 0.994 11 C -0.141 4.141 12 C -0.164 4.164 13 C -0.011 4.011 14 N -0.363 5.363 15 C 0.394 3.606 16 O -0.525 6.525 17 N -0.385 5.385 18 C 0.086 3.914 19 H 0.075 0.925 20 C -0.205 4.205 21 C -0.149 4.149 22 C -0.127 4.127 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.026 3.974 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.247 0.753 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.153 -19.457 -8.613 21.893 hybrid contribution 0.525 1.652 0.183 1.743 sum -4.628 -17.805 -8.430 20.236 Atomic orbital electron populations 1.70178 1.07725 1.27279 1.50282 1.25907 0.95394 1.03028 0.94558 0.85601 0.79107 0.79296 0.78053 1.20307 1.21339 1.18250 1.21511 0.94460 0.91922 1.49643 0.91822 1.18911 0.93896 0.93942 0.91486 0.99382 1.21497 0.97830 0.94094 1.00728 1.21913 1.00099 0.98362 0.96012 1.21876 0.95358 0.86231 0.97650 1.47653 1.10623 1.08939 1.69128 1.16264 0.82059 0.84148 0.78134 1.90878 1.60294 1.38429 1.62879 1.45188 1.18165 1.06316 1.68787 1.19630 0.82175 0.99277 0.90355 0.92501 1.22296 1.02105 1.00521 0.95609 1.22332 0.97029 0.96587 0.98980 1.20576 0.98904 0.96862 0.96332 1.21615 0.96075 1.03143 0.94585 1.21841 0.98607 0.93679 1.01255 1.21464 0.95717 0.82166 0.98022 0.93252 0.93081 0.92180 0.87534 0.93422 0.90008 0.88134 0.75267 0.91200 0.87015 0.89306 0.88686 0.92592 0.88497 0.89178 0.90660 0.92970 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.05 12.21 21.45 0.26 -57.79 16 2 C 0.01 0.63 5.24 84.66 0.44 1.07 16 3 Si 0.95 45.36 29.55 68.60 2.03 47.39 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -30.30 8.48 25.60 0.22 -30.08 16 8 H 0.06 3.43 7.77 -2.91 -0.02 3.41 16 9 C 0.04 1.93 2.11 -11.46 -0.02 1.90 16 10 H -0.01 -0.73 8.09 -2.39 -0.02 -0.75 16 11 C -0.10 -4.05 5.11 30.62 0.16 -3.89 16 12 C -0.13 -3.71 6.08 30.67 0.19 -3.52 16 13 C 0.11 3.14 6.39 86.36 0.55 3.69 16 14 N -0.63 -25.99 2.97 -836.87 -2.49 -28.48 16 15 C 0.69 29.96 8.25 179.05 1.48 31.44 16 16 O -0.64 -35.51 15.38 -4.00 -0.06 -35.58 16 17 N -0.73 -22.16 4.96 -462.33 -2.29 -24.46 16 18 C 0.19 5.32 2.74 44.05 0.12 5.44 16 19 H 0.06 2.03 7.49 -2.39 -0.02 2.01 16 20 C -0.19 -5.05 9.33 27.03 0.25 -4.79 16 21 C -0.13 -2.57 9.80 27.03 0.27 -2.31 16 22 C -0.09 -1.18 6.12 29.66 0.18 -0.99 16 23 C -0.12 -1.64 6.01 30.73 0.18 -1.46 16 24 C -0.12 -2.04 5.48 30.73 0.17 -1.87 16 25 C 0.15 7.68 5.49 86.36 0.47 8.15 16 26 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.10 2.05 5.64 -2.39 -0.01 2.03 16 33 H 0.41 9.21 6.08 -92.70 -0.56 8.65 16 34 H 0.07 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.11 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.23 8.11 -2.39 -0.02 1.21 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 3.24 5.92 -2.38 -0.01 3.23 16 43 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -78.74 336.10 2.52 -76.21 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.42 Total: 19.93 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.66 Total: 2.77 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.52 Total: -110.73 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.06 Total: -35.58 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -78.74 2.52 -76.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350380549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.087 kcal (2) G-P(sol) polarization free energy of solvation -78.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds