Wall clock time and date at job start Tue Mar 31 2020 00:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47377 * 84.72199 * 3 2 1 5 5 H 1.48500 * 109.47010 * 204.72321 * 3 2 1 6 6 H 1.48501 * 109.47096 * 324.72178 * 3 2 1 7 7 C 1.38808 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00148 * 19.73353 * 7 2 1 9 9 N 1.36938 * 120.00072 * 199.73653 * 7 2 1 10 10 C 1.46498 * 119.99775 * 40.38688 * 9 7 2 11 11 C 1.52998 * 109.47380 * 90.00154 * 10 9 7 12 12 N 1.46507 * 109.46941 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99549 * 179.97438 * 12 11 10 14 14 O 1.21275 * 120.00500 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99878 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47316 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.35122 * 307.28979 * 16 15 13 18 18 C 1.51109 * 110.38501 * 69.70213 * 16 15 13 19 19 C 1.30531 * 111.10439 * 135.25061 * 18 16 15 20 20 C 1.51095 * 111.10271 * 359.97438 * 19 18 16 21 21 C 1.54630 * 104.72942 * 343.56805 * 20 19 18 22 22 C 1.46498 * 120.00118 * 220.37999 * 9 7 2 23 23 C 1.53000 * 117.49615 * 3.80394 * 22 9 7 24 24 C 1.52991 * 117.50148 * 295.18264 * 22 9 7 25 25 H 0.97000 * 120.00056 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46837 * 210.00184 * 10 9 7 27 27 H 1.09004 * 109.47358 * 329.99377 * 10 9 7 28 28 H 1.09004 * 109.46539 * 299.99423 * 11 10 9 29 29 H 1.08997 * 109.47199 * 59.99930 * 11 10 9 30 30 H 0.97001 * 120.00056 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47138 * 300.00690 * 15 13 12 32 32 H 1.09004 * 109.47166 * 59.99951 * 15 13 12 33 33 H 1.07994 * 124.44427 * 315.21779 * 18 16 15 34 34 H 1.07997 * 124.44389 * 179.97438 * 19 18 16 35 35 H 1.09006 * 110.38739 * 224.75123 * 20 19 18 36 36 H 1.09002 * 110.48393 * 102.42578 * 20 19 18 37 37 H 1.09003 * 111.03803 * 266.60063 * 21 20 19 38 38 H 1.08999 * 111.07288 * 142.67986 * 21 20 19 39 39 H 1.09004 * 115.54666 * 149.50574 * 22 9 7 40 40 H 1.09002 * 117.50422 * 359.97438 * 23 22 9 41 41 H 1.09012 * 117.49745 * 145.01723 * 23 22 9 42 42 H 1.09004 * 117.49713 * 214.97665 * 24 22 9 43 43 H 1.08996 * 117.50208 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3862 2.1108 1.3941 5 1 3.5990 1.4105 -0.5856 6 1 1.5079 2.6179 -0.8086 7 6 2.0102 -1.2021 0.0005 8 1 1.5177 -2.1101 -0.3149 9 7 3.3192 -1.2368 0.4010 10 6 3.7544 -0.4416 1.5518 11 6 3.6084 -1.2707 2.8293 12 7 4.0442 -0.4755 3.9801 13 6 4.0033 -1.0046 5.2190 14 8 3.6061 -2.1389 5.3812 15 6 4.4521 -0.1869 6.4026 16 6 4.3060 -1.0160 7.6801 17 1 3.2956 -1.4172 7.7581 18 6 5.3220 -2.1343 7.7010 19 6 5.8922 -2.2295 8.8713 20 6 5.3519 -1.1903 9.8258 21 6 4.6423 -0.1565 8.9210 22 6 4.2844 -2.0693 -0.3212 23 6 3.7887 -2.8063 -1.5670 24 6 4.0788 -3.5848 -0.2822 25 1 -0.4850 0.8400 0.0004 26 1 4.7981 -0.1553 1.4218 27 1 3.1387 0.4547 1.6279 28 1 2.5647 -1.5569 2.9593 29 1 4.2242 -2.1668 2.7532 30 1 4.3622 0.4316 3.8503 31 1 5.4960 0.0983 6.2723 32 1 3.8373 0.7100 6.4788 33 1 5.5465 -2.7713 6.8583 34 1 6.6505 -2.9558 9.1240 35 1 6.1670 -0.7185 10.3747 36 1 4.6403 -1.6411 10.5176 37 1 5.3139 0.6616 8.6603 38 1 3.7351 0.2203 9.3933 39 1 5.3102 -1.7005 -0.3290 40 1 2.7444 -2.6722 -1.8490 41 1 4.4884 -2.9225 -2.3948 42 1 4.9692 -4.2132 -0.2647 43 1 3.2256 -3.9626 0.2811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481157009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:23 Heat of formation + Delta-G solvation = 24.282211 kcal Electronic energy + Delta-G solvation = -21540.599944 eV Core-core repulsion = 18394.441741 eV Total energy + Delta-G solvation = -3146.158202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.84046 -38.27151 -37.33883 -34.86924 -33.23896 -31.80419 -31.19105 -29.05120 -28.00671 -25.42063 -24.14598 -22.14188 -21.47074 -20.69333 -20.24181 -19.77468 -18.74386 -17.07845 -16.29394 -15.97922 -15.83129 -15.64120 -15.26295 -14.84945 -14.75494 -13.91422 -13.42365 -13.37917 -12.63151 -12.53392 -12.37108 -12.12694 -11.95277 -11.93758 -11.84003 -11.52440 -11.38832 -11.20380 -10.94076 -10.85420 -10.72381 -10.63528 -10.12299 -9.92531 -9.64146 -9.56001 -9.31760 -8.96821 -8.66948 -8.53664 -6.81006 -6.08221 -3.56744 2.24169 2.93839 3.18590 3.37798 3.42735 3.47864 4.41331 4.48285 4.50472 4.73802 4.79353 4.82952 5.02072 5.14201 5.22069 5.29655 5.39326 5.43342 5.54047 5.65858 5.70569 5.73684 5.76291 5.77240 5.83577 5.94914 6.03153 6.06553 6.14072 6.17761 6.39447 6.45668 6.50922 6.58542 6.71247 6.82243 6.84857 6.94022 7.08493 7.82174 7.96133 8.32438 8.54079 8.87845 9.59400 9.98378 11.06171 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.003918 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.280165 B = 7144.173242 C = 7933.144832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.041 3.959 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.267 1.267 6 H -0.299 1.299 7 C -0.273 4.273 8 H 0.082 0.918 9 N -0.569 5.569 10 C 0.132 3.868 11 C 0.101 3.899 12 N -0.729 5.729 13 C 0.507 3.493 14 O -0.541 6.541 15 C -0.134 4.134 16 C -0.055 4.055 17 H 0.091 0.909 18 C -0.136 4.136 19 C -0.188 4.188 20 C -0.098 4.098 21 C -0.123 4.123 22 C 0.119 3.881 23 C -0.184 4.184 24 C -0.221 4.221 25 H 0.265 0.735 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.395 0.605 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.567 1.655 13.767 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.161 4.161 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.192 1.192 6 H -0.227 1.227 7 C -0.402 4.402 8 H 0.099 0.901 9 N -0.288 5.288 10 C 0.006 3.994 11 C -0.024 4.024 12 N -0.380 5.380 13 C 0.293 3.707 14 O -0.418 6.418 15 C -0.174 4.174 16 C -0.073 4.073 17 H 0.109 0.891 18 C -0.154 4.154 19 C -0.206 4.206 20 C -0.135 4.135 21 C -0.160 4.160 22 C 0.010 3.990 23 C -0.223 4.223 24 C -0.261 4.261 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.228 0.772 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.077 0.961 13.836 18.390 hybrid contribution 0.471 1.255 -0.187 1.353 sum 12.548 2.216 13.649 18.672 Atomic orbital electron populations 1.69842 1.05999 1.26902 1.50769 1.25519 0.95095 0.97906 0.97566 0.86853 0.80751 0.84379 0.76892 1.21371 1.19185 1.22733 1.18666 0.84535 0.94290 1.42675 0.90090 1.43498 1.06383 1.51517 1.27432 1.21304 0.97757 0.94198 0.86184 1.22211 1.00931 0.94895 0.84402 1.46159 1.66559 1.18038 1.07238 1.20624 0.78207 0.87678 0.84222 1.90693 1.46666 1.18992 1.85471 1.21731 1.03174 0.99370 0.93112 1.20832 1.00082 0.93693 0.92721 0.89061 1.23330 0.95892 0.98135 0.97999 1.23216 1.01027 1.00595 0.95712 1.21315 0.99371 0.95201 0.97594 1.22568 1.00522 0.97556 0.95376 1.21101 0.92635 0.88540 0.96691 1.23084 1.03020 1.05184 0.90969 1.23397 1.02391 0.97809 1.02540 0.92513 0.93628 0.92380 0.90794 0.92070 0.77220 0.89026 0.88881 0.85734 0.86182 0.91529 0.90989 0.90955 0.90872 0.89408 0.87676 0.90375 0.90638 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.97 55.49 0.78 -25.86 16 2 C 0.04 1.13 5.33 -17.43 -0.09 1.04 16 3 Si 0.88 21.20 25.00 -169.99 -4.25 16.95 16 4 H -0.29 -6.53 6.71 56.52 0.38 -6.15 16 5 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.27 -7.36 8.73 -15.06 -0.13 -7.50 16 8 H 0.08 2.39 7.24 -52.48 -0.38 2.01 16 9 N -0.57 -13.04 2.37 -165.67 -0.39 -13.43 16 10 C 0.13 2.66 4.63 -4.04 -0.02 2.64 16 11 C 0.10 1.94 6.00 -4.04 -0.02 1.92 16 12 N -0.73 -11.31 5.56 -60.29 -0.33 -11.64 16 13 C 0.51 7.87 7.63 -10.99 -0.08 7.79 16 14 O -0.54 -10.55 14.92 5.56 0.08 -10.47 16 15 C -0.13 -1.46 5.09 -27.88 -0.14 -1.61 16 16 C -0.05 -0.62 2.52 -90.71 -0.23 -0.85 16 17 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 18 C -0.14 -1.63 9.26 -35.69 -0.33 -1.97 16 19 C -0.19 -1.92 10.78 -35.70 -0.38 -2.30 16 20 C -0.10 -0.84 6.81 -26.83 -0.18 -1.03 16 21 C -0.12 -1.06 6.71 -25.01 -0.17 -1.23 16 22 C 0.12 2.35 6.57 -67.94 -0.45 1.91 16 23 C -0.18 -3.50 9.78 -26.73 -0.26 -3.76 16 24 C -0.22 -4.08 10.35 -26.74 -0.28 -4.35 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.06 1.27 3.44 -51.93 -0.18 1.09 16 28 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.39 4.95 8.47 -40.82 -0.35 4.61 16 31 H 0.09 0.84 8.13 -51.93 -0.42 0.41 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.12 1.69 7.58 -52.49 -0.40 1.30 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.55 7.91 -51.93 -0.41 0.14 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.10 2.26 6.65 -51.93 -0.35 1.92 16 41 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.34 346.12 -8.79 -40.13 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.12 Total: 8.40 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.77 Total: -9.30 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.05 Total: -50.93 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.25 Total: 16.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.34 -8.79 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481157009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.414 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds