Wall clock time and date at job start Tue Mar 31 2020 00:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47377 * 84.72199 * 3 2 1 5 5 H 1.48500 * 109.47010 * 204.72321 * 3 2 1 6 6 H 1.48501 * 109.47096 * 324.72178 * 3 2 1 7 7 C 1.38808 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00148 * 19.73353 * 7 2 1 9 9 N 1.36938 * 120.00072 * 199.73653 * 7 2 1 10 10 C 1.46498 * 119.99775 * 40.38688 * 9 7 2 11 11 C 1.52998 * 109.47380 * 90.00154 * 10 9 7 12 12 N 1.46507 * 109.46941 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99549 * 179.97438 * 12 11 10 14 14 O 1.21275 * 120.00500 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99878 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47316 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.35122 * 307.28979 * 16 15 13 18 18 C 1.51109 * 110.38501 * 69.70213 * 16 15 13 19 19 C 1.30531 * 111.10439 * 135.25061 * 18 16 15 20 20 C 1.51095 * 111.10271 * 359.97438 * 19 18 16 21 21 C 1.54630 * 104.72942 * 343.56805 * 20 19 18 22 22 C 1.46498 * 120.00118 * 220.37999 * 9 7 2 23 23 C 1.53000 * 117.49615 * 3.80394 * 22 9 7 24 24 C 1.52991 * 117.50148 * 295.18264 * 22 9 7 25 25 H 0.97000 * 120.00056 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46837 * 210.00184 * 10 9 7 27 27 H 1.09004 * 109.47358 * 329.99377 * 10 9 7 28 28 H 1.09004 * 109.46539 * 299.99423 * 11 10 9 29 29 H 1.08997 * 109.47199 * 59.99930 * 11 10 9 30 30 H 0.97001 * 120.00056 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47138 * 300.00690 * 15 13 12 32 32 H 1.09004 * 109.47166 * 59.99951 * 15 13 12 33 33 H 1.07994 * 124.44427 * 315.21779 * 18 16 15 34 34 H 1.07997 * 124.44389 * 179.97438 * 19 18 16 35 35 H 1.09006 * 110.38739 * 224.75123 * 20 19 18 36 36 H 1.09002 * 110.48393 * 102.42578 * 20 19 18 37 37 H 1.09003 * 111.03803 * 266.60063 * 21 20 19 38 38 H 1.08999 * 111.07288 * 142.67986 * 21 20 19 39 39 H 1.09004 * 115.54666 * 149.50574 * 22 9 7 40 40 H 1.09002 * 117.50422 * 359.97438 * 23 22 9 41 41 H 1.09012 * 117.49745 * 145.01723 * 23 22 9 42 42 H 1.09004 * 117.49713 * 214.97665 * 24 22 9 43 43 H 1.08996 * 117.50208 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3862 2.1108 1.3941 5 1 3.5990 1.4105 -0.5856 6 1 1.5079 2.6179 -0.8086 7 6 2.0102 -1.2021 0.0005 8 1 1.5177 -2.1101 -0.3149 9 7 3.3192 -1.2368 0.4010 10 6 3.7544 -0.4416 1.5518 11 6 3.6084 -1.2707 2.8293 12 7 4.0442 -0.4755 3.9801 13 6 4.0033 -1.0046 5.2190 14 8 3.6061 -2.1389 5.3812 15 6 4.4521 -0.1869 6.4026 16 6 4.3060 -1.0160 7.6801 17 1 3.2956 -1.4172 7.7581 18 6 5.3220 -2.1343 7.7010 19 6 5.8922 -2.2295 8.8713 20 6 5.3519 -1.1903 9.8258 21 6 4.6423 -0.1565 8.9210 22 6 4.2844 -2.0693 -0.3212 23 6 3.7887 -2.8063 -1.5670 24 6 4.0788 -3.5848 -0.2822 25 1 -0.4850 0.8400 0.0004 26 1 4.7981 -0.1553 1.4218 27 1 3.1387 0.4547 1.6279 28 1 2.5647 -1.5569 2.9593 29 1 4.2242 -2.1668 2.7532 30 1 4.3622 0.4316 3.8503 31 1 5.4960 0.0983 6.2723 32 1 3.8373 0.7100 6.4788 33 1 5.5465 -2.7713 6.8583 34 1 6.6505 -2.9558 9.1240 35 1 6.1670 -0.7185 10.3747 36 1 4.6403 -1.6411 10.5176 37 1 5.3139 0.6616 8.6603 38 1 3.7351 0.2203 9.3933 39 1 5.3102 -1.7005 -0.3290 40 1 2.7444 -2.6722 -1.8490 41 1 4.4884 -2.9225 -2.3948 42 1 4.9692 -4.2132 -0.2647 43 1 3.2256 -3.9626 0.2811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481157009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:22 Heat of formation + Delta-G solvation = 4.212407 kcal Electronic energy + Delta-G solvation = -21541.470236 eV Core-core repulsion = 18394.441741 eV Total energy + Delta-G solvation = -3147.028494 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99299 -39.34630 -38.89066 -36.36143 -34.98714 -33.39351 -32.47753 -29.84634 -29.52843 -26.68321 -25.80544 -23.67439 -23.00492 -21.77758 -21.51533 -21.21637 -19.64200 -18.60837 -17.76439 -17.53752 -17.19553 -16.78327 -16.71793 -16.26397 -15.84620 -15.41083 -14.84955 -14.78225 -14.42498 -14.09187 -13.77046 -13.53970 -13.21636 -12.91966 -12.75636 -12.74504 -12.66106 -12.49872 -12.23942 -12.07140 -11.99195 -11.93120 -11.69511 -11.67237 -11.37411 -10.98907 -10.80025 -10.62848 -10.05481 -9.78348 -8.67623 -8.21279 -5.68659 1.28691 1.39498 1.43388 1.55280 1.71055 2.19932 2.40767 3.02668 3.20901 3.32708 3.66247 3.74779 3.99155 4.02648 4.08867 4.20203 4.25294 4.36284 4.37808 4.44632 4.51470 4.57879 4.59149 4.68552 4.77537 4.91672 4.93808 4.97051 4.99610 5.01008 5.10212 5.13608 5.29602 5.30999 5.43194 5.48392 5.51145 5.69751 5.90644 6.00265 6.17107 6.62313 6.94432 7.33302 7.57049 7.96600 8.97443 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.003918 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.280165 B = 7144.173242 C = 7933.144832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.021 4.021 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.249 1.249 6 H -0.310 1.310 7 C -0.261 4.261 8 H 0.033 0.967 9 N -0.584 5.584 10 C 0.132 3.868 11 C 0.119 3.881 12 N -0.720 5.720 13 C 0.501 3.499 14 O -0.589 6.589 15 C -0.122 4.122 16 C -0.058 4.058 17 H 0.062 0.938 18 C -0.169 4.169 19 C -0.171 4.171 20 C -0.100 4.100 21 C -0.115 4.115 22 C 0.104 3.896 23 C -0.184 4.184 24 C -0.211 4.211 25 H 0.264 0.736 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.414 0.586 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.067 0.933 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.312 3.885 15.237 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.217 4.217 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.172 1.172 6 H -0.239 1.239 7 C -0.391 4.391 8 H 0.051 0.949 9 N -0.304 5.304 10 C 0.006 3.994 11 C -0.007 4.007 12 N -0.373 5.373 13 C 0.290 3.710 14 O -0.469 6.469 15 C -0.161 4.161 16 C -0.076 4.076 17 H 0.080 0.920 18 C -0.187 4.187 19 C -0.189 4.189 20 C -0.136 4.136 21 C -0.152 4.152 22 C -0.003 4.003 23 C -0.222 4.222 24 C -0.251 4.251 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.250 0.750 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.145 0.855 40 H 0.085 0.915 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.877 3.203 15.322 22.296 hybrid contribution -0.705 0.359 -0.605 0.996 sum 15.172 3.562 14.717 21.435 Atomic orbital electron populations 1.70002 1.08077 1.27722 1.53564 1.26238 0.95722 1.01913 0.97852 0.85717 0.79594 0.78888 0.77916 1.18935 1.17209 1.23897 1.18419 0.86467 0.92709 1.41502 0.94946 1.43605 1.05476 1.52380 1.28914 1.21395 0.99650 0.93123 0.85184 1.21705 0.97904 0.95254 0.85872 1.46003 1.66312 1.18624 1.06329 1.21560 0.76907 0.87454 0.85111 1.90679 1.48649 1.21430 1.86126 1.21782 1.05076 0.99028 0.90262 1.20840 0.98330 0.94115 0.94365 0.91967 1.23243 0.97833 0.99378 0.98254 1.23523 0.99889 1.00312 0.95197 1.21394 1.00104 0.94789 0.97355 1.22574 1.01430 0.97498 0.93682 1.21505 0.93513 0.88536 0.96724 1.23066 1.01757 1.05258 0.92154 1.23337 1.02496 0.97668 1.01588 0.92700 0.89370 0.93658 0.95757 0.92722 0.74959 0.86172 0.86329 0.88360 0.85100 0.89423 0.90559 0.89034 0.89835 0.85464 0.91481 0.86684 0.87007 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.97 21.65 0.30 -58.99 16 2 C -0.02 -1.19 5.33 84.86 0.45 -0.73 16 3 Si 0.95 43.58 25.00 68.60 1.71 45.30 16 4 H -0.26 -10.96 6.71 99.48 0.67 -10.30 16 5 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.26 -14.67 8.73 84.03 0.73 -13.93 16 8 H 0.03 2.09 7.24 -2.91 -0.02 2.07 16 9 N -0.58 -26.54 2.37 -678.05 -1.61 -28.15 16 10 C 0.13 5.08 4.63 86.38 0.40 5.48 16 11 C 0.12 4.60 6.00 86.38 0.52 5.12 16 12 N -0.72 -21.31 5.56 -463.06 -2.57 -23.88 16 13 C 0.50 15.29 7.63 87.66 0.67 15.96 16 14 O -0.59 -23.85 14.92 -3.01 -0.04 -23.89 16 15 C -0.12 -2.37 5.09 29.85 0.15 -2.22 16 16 C -0.06 -1.24 2.52 -10.85 -0.03 -1.27 16 17 H 0.06 1.67 7.90 -2.39 -0.02 1.65 16 18 C -0.17 -4.00 9.26 26.26 0.24 -3.76 16 19 C -0.17 -3.20 10.78 26.26 0.28 -2.91 16 20 C -0.10 -1.42 6.81 30.53 0.21 -1.21 16 21 C -0.11 -1.62 6.71 31.71 0.21 -1.40 16 22 C 0.10 3.94 6.57 44.99 0.30 4.23 16 23 C -0.18 -6.85 9.78 30.59 0.30 -6.55 16 24 C -0.21 -7.62 10.35 30.59 0.32 -7.30 16 25 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.09 2.69 8.07 -2.39 -0.02 2.67 16 27 H 0.05 1.88 3.44 -2.39 -0.01 1.87 16 28 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.41 9.05 8.47 -92.71 -0.79 8.27 16 31 H 0.12 1.71 8.13 -2.39 -0.02 1.70 16 32 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.80 7.58 -2.91 -0.02 2.78 16 34 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.97 7.91 -2.39 -0.02 0.95 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.07 3.02 6.65 -2.39 -0.02 3.00 16 41 H 0.12 3.41 8.14 -2.38 -0.02 3.39 16 42 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -74.36 346.12 2.71 -71.65 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.16 Total: 28.46 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.76 Total: -10.49 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.88 Total: -111.02 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.04 Total: -23.89 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.71 Total: 45.30 kcal Total: -74.36 2.71 -71.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481157009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.861 kcal (2) G-P(sol) polarization free energy of solvation -74.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds