Wall clock time and date at job start Tue Mar 31 2020 00:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47367 * 239.99564 * 3 2 1 5 5 H 1.48505 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46976 * 119.99672 * 3 2 1 7 7 C 1.38807 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99452 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00468 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64593 * 359.97438 * 9 7 2 11 11 C 1.54914 * 104.83031 * 155.90239 * 10 9 7 12 12 C 1.55157 * 101.58283 * 37.00928 * 11 10 9 13 13 H 1.09008 * 110.71820 * 83.03583 * 12 11 10 14 14 C 1.52996 * 110.72286 * 206.13354 * 12 11 10 15 15 C 1.52993 * 109.47476 * 182.56119 * 14 12 11 16 16 N 1.46496 * 109.47558 * 180.02562 * 15 14 12 17 17 C 1.34777 * 120.00266 * 180.02562 * 16 15 14 18 18 O 1.21610 * 119.99815 * 0.26813 * 17 16 15 19 19 C 1.47106 * 119.99806 * 179.97438 * 17 16 15 20 20 C 1.32991 * 119.99481 * 179.97438 * 19 17 16 21 21 C 1.51408 * 136.32166 * 359.63676 * 20 19 17 22 22 C 1.53374 * 87.51733 * 206.05199 * 21 20 19 23 23 C 1.51405 * 136.31340 * 179.97438 * 20 19 17 24 24 C 1.47322 * 125.61728 * 180.19684 * 9 7 2 25 25 H 0.97002 * 119.99861 * 0.02562 * 1 2 3 26 26 H 1.08997 * 110.36768 * 37.06584 * 10 9 7 27 27 H 1.08995 * 110.46201 * 274.78700 * 10 9 7 28 28 H 1.08995 * 111.00566 * 278.93009 * 11 10 9 29 29 H 1.09007 * 111.03291 * 155.09454 * 11 10 9 30 30 H 1.08996 * 109.47261 * 62.55551 * 14 12 11 31 31 H 1.09000 * 109.46870 * 302.55940 * 14 12 11 32 32 H 1.09004 * 109.47185 * 59.99762 * 15 14 12 33 33 H 1.09004 * 109.46672 * 300.00242 * 15 14 12 34 34 H 0.96999 * 119.99691 * 359.97438 * 16 15 14 35 35 H 1.07999 * 120.00156 * 359.97438 * 19 17 16 36 36 H 1.08999 * 113.55637 * 320.63314 * 21 20 19 37 37 H 1.08993 * 113.56359 * 91.36387 * 21 20 19 38 38 H 1.08996 * 113.96831 * 220.28654 * 22 21 20 39 39 H 1.08998 * 113.71093 * 88.80647 * 22 21 20 40 40 H 1.09006 * 113.56639 * 268.63412 * 23 20 19 41 41 H 1.09007 * 113.56438 * 39.29411 * 23 20 19 42 42 H 1.08994 * 110.06760 * 61.68150 * 24 9 7 43 43 H 1.09004 * 109.84455 * 300.41959 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4017 -3.9325 -0.6109 12 6 0.7782 -4.7524 -0.0255 13 1 0.5444 -5.1003 0.9808 14 6 1.1230 -5.9317 -0.9373 15 6 2.2450 -6.7559 -0.3029 16 7 2.5756 -7.8847 -1.1762 17 6 3.5421 -8.7532 -0.8184 18 8 4.1364 -8.6026 0.2319 19 6 3.8735 -9.8870 -1.6951 20 6 4.8276 -10.7436 -1.3422 21 6 5.7786 -10.9036 -0.1749 22 6 6.7179 -11.6518 -1.1289 23 6 5.4517 -11.9909 -1.9313 24 6 1.9336 -3.7299 0.0052 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5993 -1.7590 -0.6153 27 1 -0.5292 -2.4857 1.0182 28 1 -0.3521 -3.8987 -1.6992 29 1 -1.3592 -4.3332 -0.2777 30 1 1.4508 -5.5574 -1.9071 31 1 0.2414 -6.5589 -1.0690 32 1 1.9172 -7.1302 0.6669 33 1 3.1266 -6.1286 -0.1711 34 1 2.0983 -8.0074 -2.0117 35 1 3.3421 -10.0236 -2.6254 36 1 6.1879 -9.9600 0.1859 37 1 5.3837 -11.5279 0.6265 38 1 7.2021 -12.5204 -0.6828 39 1 7.4139 -11.0013 -1.6585 40 1 4.9672 -12.9135 -1.6113 41 1 5.5918 -11.9398 -3.0111 42 1 2.5273 -3.8683 0.9087 43 1 2.5622 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481422451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:35 Heat of formation + Delta-G solvation = 17.949887 kcal Electronic energy + Delta-G solvation = -20868.911262 eV Core-core repulsion = 17722.478469 eV Total energy + Delta-G solvation = -3146.432793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93175 -38.59261 -37.69463 -35.11096 -33.00854 -31.44953 -30.42115 -28.89676 -26.58643 -26.07182 -24.81635 -23.49148 -22.15817 -20.88608 -20.05254 -19.37476 -18.38290 -17.03215 -16.83977 -16.05600 -15.83608 -15.56772 -14.90960 -14.61222 -14.53343 -14.01602 -13.59820 -13.52044 -12.77580 -12.48962 -12.28934 -12.21930 -12.03216 -11.86181 -11.65315 -11.54483 -11.31329 -11.02955 -10.87689 -10.80940 -10.71499 -10.13849 -10.05253 -9.93137 -9.75475 -9.67662 -9.48233 -9.41221 -8.96934 -8.60071 -6.77475 -5.60444 -3.01636 1.17180 3.14580 3.25679 3.43633 3.47412 3.49003 4.09921 4.19188 4.43823 4.53386 4.77876 4.90926 5.01808 5.14984 5.19257 5.29290 5.34234 5.36870 5.49293 5.52322 5.63994 5.65974 5.70670 5.82723 5.89733 5.93232 5.99561 6.06525 6.23995 6.27453 6.35569 6.43009 6.49253 6.64877 6.68612 6.82058 7.02953 7.52330 7.57501 7.67552 7.90680 8.24387 8.41720 9.27583 9.88469 10.54297 11.43476 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031965 B = 0.002667 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.735615 B =10497.538895 C =11105.886585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.116 4.116 15 C 0.118 3.882 16 N -0.726 5.726 17 C 0.546 3.454 18 O -0.543 6.543 19 C -0.199 4.199 20 C -0.064 4.064 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.109 4.109 24 C 0.139 3.861 25 H 0.252 0.748 26 H 0.105 0.895 27 H 0.010 0.990 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.020 0.980 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -23.710 -5.565 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.090 0.910 14 C -0.154 4.154 15 C -0.005 4.005 16 N -0.377 5.377 17 C 0.335 3.665 18 O -0.422 6.422 19 C -0.219 4.219 20 C -0.066 4.066 21 C -0.143 4.143 22 C -0.180 4.180 23 C -0.146 4.146 24 C 0.013 3.987 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.028 0.972 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.038 0.962 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.965 -23.334 -4.794 24.557 hybrid contribution 0.148 0.824 -0.421 0.937 sum 6.113 -22.511 -5.215 23.902 Atomic orbital electron populations 1.69799 1.04872 1.24770 1.57864 1.24784 0.95739 0.97688 1.02651 0.86149 0.78382 0.83073 0.77889 1.21206 1.21592 1.21237 1.19057 0.90494 0.82596 1.42770 0.90615 1.44592 1.01984 0.99795 1.86817 1.21912 0.84668 0.92657 0.98113 1.23038 0.95860 0.98867 0.99947 1.22093 0.97499 0.93802 0.98323 0.91001 1.21786 0.97184 0.96695 0.99751 1.21487 0.98848 0.86715 0.93460 1.45967 1.38549 1.28247 1.24917 1.18429 0.79705 0.82379 0.86035 1.90782 1.51769 1.75042 1.24642 1.21621 1.00731 0.97645 1.01945 1.23467 0.91077 0.94355 0.97713 1.22220 0.94462 1.01858 0.95786 1.22734 0.95966 1.00892 0.98449 1.22358 0.95859 0.95787 1.00547 1.21423 0.93688 0.85880 0.97684 0.93762 0.87706 0.97186 0.92221 0.92514 0.91202 0.91671 0.91561 0.91018 0.76679 0.85052 0.89424 0.88448 0.90419 0.89697 0.88167 0.90413 0.96217 0.95913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.47 10.09 55.49 0.56 -26.91 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.61 -16.02 3.40 -169.84 -0.58 -16.60 16 10 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 11 C -0.14 -2.61 6.54 -24.58 -0.16 -2.77 16 12 C -0.10 -1.68 2.95 -88.79 -0.26 -1.94 16 13 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 14 C -0.12 -1.53 4.72 -26.74 -0.13 -1.66 16 15 C 0.12 1.58 5.54 -4.05 -0.02 1.56 16 16 N -0.73 -8.30 5.55 -61.49 -0.34 -8.64 16 17 C 0.55 7.14 7.76 -12.66 -0.10 7.04 16 18 O -0.54 -9.18 15.16 5.27 0.08 -9.10 16 19 C -0.20 -1.95 10.03 -37.80 -0.38 -2.33 16 20 C -0.06 -0.60 6.93 -100.48 -0.70 -1.30 16 21 C -0.11 -0.99 6.98 -27.56 -0.19 -1.19 16 22 C -0.14 -0.96 8.17 -26.19 -0.21 -1.17 16 23 C -0.11 -0.69 7.96 -27.40 -0.22 -0.90 16 24 C 0.14 2.98 6.13 -2.90 -0.02 2.96 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.11 7.58 -51.93 -0.39 0.71 16 34 H 0.40 3.34 8.46 -40.82 -0.35 2.99 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.09 1.01 7.50 -51.93 -0.39 0.62 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.49 7.73 -51.93 -0.40 0.08 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -33.36 347.37 -10.01 -43.37 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.29 Total: 0.06 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.65 Total: -4.93 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.36 Total: -52.15 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.36 -10.01 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481422451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.318 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds