Wall clock time and date at job start Tue Mar 31 2020 00:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47367 * 239.99564 * 3 2 1 5 5 H 1.48505 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46976 * 119.99672 * 3 2 1 7 7 C 1.38807 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99452 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00468 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64593 * 359.97438 * 9 7 2 11 11 C 1.54914 * 104.83031 * 155.90239 * 10 9 7 12 12 C 1.55157 * 101.58283 * 37.00928 * 11 10 9 13 13 H 1.09008 * 110.71820 * 83.03583 * 12 11 10 14 14 C 1.52996 * 110.72286 * 206.13354 * 12 11 10 15 15 C 1.52993 * 109.47476 * 182.56119 * 14 12 11 16 16 N 1.46496 * 109.47558 * 180.02562 * 15 14 12 17 17 C 1.34777 * 120.00266 * 180.02562 * 16 15 14 18 18 O 1.21610 * 119.99815 * 0.26813 * 17 16 15 19 19 C 1.47106 * 119.99806 * 179.97438 * 17 16 15 20 20 C 1.32991 * 119.99481 * 179.97438 * 19 17 16 21 21 C 1.51408 * 136.32166 * 359.63676 * 20 19 17 22 22 C 1.53374 * 87.51733 * 206.05199 * 21 20 19 23 23 C 1.51405 * 136.31340 * 179.97438 * 20 19 17 24 24 C 1.47322 * 125.61728 * 180.19684 * 9 7 2 25 25 H 0.97002 * 119.99861 * 0.02562 * 1 2 3 26 26 H 1.08997 * 110.36768 * 37.06584 * 10 9 7 27 27 H 1.08995 * 110.46201 * 274.78700 * 10 9 7 28 28 H 1.08995 * 111.00566 * 278.93009 * 11 10 9 29 29 H 1.09007 * 111.03291 * 155.09454 * 11 10 9 30 30 H 1.08996 * 109.47261 * 62.55551 * 14 12 11 31 31 H 1.09000 * 109.46870 * 302.55940 * 14 12 11 32 32 H 1.09004 * 109.47185 * 59.99762 * 15 14 12 33 33 H 1.09004 * 109.46672 * 300.00242 * 15 14 12 34 34 H 0.96999 * 119.99691 * 359.97438 * 16 15 14 35 35 H 1.07999 * 120.00156 * 359.97438 * 19 17 16 36 36 H 1.08999 * 113.55637 * 320.63314 * 21 20 19 37 37 H 1.08993 * 113.56359 * 91.36387 * 21 20 19 38 38 H 1.08996 * 113.96831 * 220.28654 * 22 21 20 39 39 H 1.08998 * 113.71093 * 88.80647 * 22 21 20 40 40 H 1.09006 * 113.56639 * 268.63412 * 23 20 19 41 41 H 1.09007 * 113.56438 * 39.29411 * 23 20 19 42 42 H 1.08994 * 110.06760 * 61.68150 * 24 9 7 43 43 H 1.09004 * 109.84455 * 300.41959 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4017 -3.9325 -0.6109 12 6 0.7782 -4.7524 -0.0255 13 1 0.5444 -5.1003 0.9808 14 6 1.1230 -5.9317 -0.9373 15 6 2.2450 -6.7559 -0.3029 16 7 2.5756 -7.8847 -1.1762 17 6 3.5421 -8.7532 -0.8184 18 8 4.1364 -8.6026 0.2319 19 6 3.8735 -9.8870 -1.6951 20 6 4.8276 -10.7436 -1.3422 21 6 5.7786 -10.9036 -0.1749 22 6 6.7179 -11.6518 -1.1289 23 6 5.4517 -11.9909 -1.9313 24 6 1.9336 -3.7299 0.0052 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5993 -1.7590 -0.6153 27 1 -0.5292 -2.4857 1.0182 28 1 -0.3521 -3.8987 -1.6992 29 1 -1.3592 -4.3332 -0.2777 30 1 1.4508 -5.5574 -1.9071 31 1 0.2414 -6.5589 -1.0690 32 1 1.9172 -7.1302 0.6669 33 1 3.1266 -6.1286 -0.1711 34 1 2.0983 -8.0074 -2.0117 35 1 3.3421 -10.0236 -2.6254 36 1 6.1879 -9.9600 0.1859 37 1 5.3837 -11.5279 0.6265 38 1 7.2021 -12.5204 -0.6828 39 1 7.4139 -11.0013 -1.6585 40 1 4.9672 -12.9135 -1.6113 41 1 5.5918 -11.9398 -3.0111 42 1 2.5273 -3.8683 0.9087 43 1 2.5622 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481422451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:34 Heat of formation + Delta-G solvation = -3.133127 kcal Electronic energy + Delta-G solvation = -20869.825490 eV Core-core repulsion = 17722.478469 eV Total energy + Delta-G solvation = -3147.347021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86466 -39.55610 -39.09021 -36.40575 -34.74605 -32.73546 -31.68928 -30.57302 -28.15647 -26.70437 -26.57056 -24.50451 -23.32563 -22.01440 -21.72649 -20.79113 -19.18566 -18.89431 -17.92427 -17.07740 -16.95507 -16.64791 -16.37908 -16.02306 -15.67748 -15.28060 -14.96035 -14.78091 -14.28080 -13.79816 -13.51843 -13.34143 -13.33290 -13.11347 -12.92513 -12.82441 -12.68566 -12.63338 -12.24172 -12.03893 -11.90763 -11.78405 -11.61693 -11.44696 -11.41878 -11.23600 -10.75424 -10.67344 -10.31323 -9.90323 -8.89022 -7.78324 -5.22836 0.39361 1.44242 1.47923 1.54423 2.22939 2.33105 2.48699 3.30143 3.42093 3.59835 3.73334 3.75435 3.84120 3.93835 4.15085 4.20387 4.26521 4.34013 4.36309 4.61232 4.63685 4.70459 4.73375 4.74976 4.86348 4.88389 4.94910 5.02647 5.04530 5.10634 5.18535 5.25367 5.27911 5.36027 5.42374 5.48209 5.50705 5.68391 5.68667 5.82864 6.31584 6.64898 7.10744 7.31092 7.78382 8.42535 9.23190 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031965 B = 0.002667 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.735615 B =10497.538895 C =11105.886585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.630 5.630 10 C 0.149 3.851 11 C -0.121 4.121 12 C -0.085 4.085 13 H 0.077 0.923 14 C -0.099 4.099 15 C 0.124 3.876 16 N -0.713 5.713 17 C 0.537 3.463 18 O -0.593 6.593 19 C -0.209 4.209 20 C -0.073 4.073 21 C -0.122 4.122 22 C -0.136 4.136 23 C -0.093 4.093 24 C 0.133 3.867 25 H 0.248 0.752 26 H 0.072 0.928 27 H -0.018 1.018 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.418 0.582 35 H 0.166 0.834 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.010 0.990 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -26.077 -7.347 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.104 4.104 13 H 0.096 0.904 14 C -0.137 4.137 15 C 0.000 4.000 16 N -0.365 5.365 17 C 0.327 3.673 18 O -0.476 6.476 19 C -0.229 4.229 20 C -0.075 4.075 21 C -0.159 4.159 22 C -0.173 4.173 23 C -0.130 4.130 24 C 0.008 3.992 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.000 1.000 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.255 0.745 35 H 0.184 0.816 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.028 0.972 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.998 -25.734 -6.614 27.239 hybrid contribution 0.184 1.557 0.206 1.581 sum 6.182 -24.177 -6.408 25.764 Atomic orbital electron populations 1.70059 1.06150 1.25119 1.58519 1.25654 0.96726 1.01000 1.02686 0.85110 0.77146 0.78659 0.78159 1.20152 1.21591 1.20675 1.19426 0.90919 0.84120 1.42789 0.90645 1.44945 1.02962 1.00946 1.86748 1.21764 0.83842 0.95629 0.96372 1.22878 0.97870 0.95058 1.00124 1.22013 0.94793 0.93896 0.99722 0.90436 1.21621 0.98284 0.95224 0.98525 1.21251 0.97869 0.87046 0.93807 1.45800 1.38244 1.27156 1.25251 1.19091 0.79192 0.83123 0.85855 1.90762 1.53515 1.76348 1.26932 1.21727 1.01807 0.96586 1.02767 1.23937 0.90292 0.95397 0.97844 1.22343 0.95919 1.00944 0.96699 1.22729 0.96015 1.01001 0.97556 1.22377 0.94504 0.94703 1.01374 1.21618 0.95297 0.85081 0.97157 0.94266 0.90994 0.99955 0.91299 0.89493 0.90699 0.88281 0.92253 0.93687 0.74520 0.81629 0.92658 0.88140 0.88611 0.89883 0.86254 0.88679 0.97220 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 10.09 21.65 0.22 -57.76 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -14.32 10.28 84.03 0.86 -13.46 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -34.05 3.40 -691.24 -2.35 -36.40 16 10 C 0.15 7.54 5.89 86.86 0.51 8.05 16 11 C -0.12 -4.34 6.54 31.99 0.21 -4.13 16 12 C -0.08 -2.78 2.95 -9.61 -0.03 -2.81 16 13 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 14 C -0.10 -2.31 4.72 30.59 0.14 -2.17 16 15 C 0.12 3.19 5.54 86.38 0.48 3.67 16 16 N -0.71 -15.03 5.55 -466.72 -2.59 -17.62 16 17 C 0.54 13.70 7.76 86.57 0.67 14.37 16 18 O -0.59 -20.65 15.16 -4.06 -0.06 -20.71 16 19 C -0.21 -3.70 10.03 23.43 0.23 -3.46 16 20 C -0.07 -1.24 6.93 -17.17 -0.12 -1.36 16 21 C -0.12 -2.26 6.98 30.06 0.21 -2.05 16 22 C -0.14 -1.56 8.17 30.95 0.25 -1.31 16 23 C -0.09 -0.88 7.96 30.16 0.24 -0.64 16 24 C 0.13 5.76 6.13 86.67 0.53 6.29 16 25 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.07 4.12 5.87 -2.39 -0.01 4.11 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.07 2.37 8.05 -2.39 -0.02 2.35 16 29 H 0.09 2.62 8.14 -2.38 -0.02 2.61 16 30 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.04 1.40 7.58 -2.39 -0.02 1.38 16 34 H 0.42 5.66 8.46 -92.71 -0.78 4.88 16 35 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.05 1.37 7.50 -2.39 -0.02 1.35 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.03 1.10 7.73 -2.38 -0.02 1.08 16 Total: -1.00 -76.27 347.37 2.11 -74.16 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.20 Total: 11.83 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 4.67 Total: -2.55 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.72 Total: -111.78 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.06 Total: -20.71 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -76.27 2.11 -74.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481422451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.031 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds