Wall clock time and date at job start Tue Mar 31 2020 00:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48502 * 109.46881 * 269.99916 * 3 2 1 5 5 H 1.48499 * 109.47149 * 29.99553 * 3 2 1 6 6 H 1.48496 * 109.47418 * 149.99816 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21614 * 120.00155 * 0.02562 * 17 16 15 19 19 C 1.47097 * 119.99800 * 179.97438 * 17 16 15 20 20 C 1.32996 * 120.00018 * 179.97438 * 19 17 16 21 21 C 1.51414 * 136.31515 * 359.63944 * 20 19 17 22 22 C 1.53375 * 87.51621 * 206.05060 * 21 20 19 23 23 C 1.51402 * 136.31915 * 179.97438 * 20 19 17 24 24 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 25 25 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 26 26 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 27 27 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 28 28 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 29 29 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 30 30 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 31 31 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 32 32 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 33 33 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 34 34 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 35 35 H 1.08007 * 120.00301 * 0.02562 * 19 17 16 36 36 H 1.08997 * 113.55255 * 320.63312 * 21 20 19 37 37 H 1.08997 * 113.55914 * 91.36255 * 21 20 19 38 38 H 1.08999 * 113.96822 * 220.29108 * 22 21 20 39 39 H 1.08993 * 113.60210 * 88.79467 * 22 21 20 40 40 H 1.09001 * 113.56813 * 268.63474 * 23 20 19 41 41 H 1.09007 * 113.56133 * 39.37374 * 23 20 19 42 42 H 1.08998 * 109.88222 * 59.56024 * 24 9 7 43 43 H 1.09005 * 110.01447 * 298.46604 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1490 -8.5919 -0.2325 19 6 3.8830 -9.8841 1.6888 20 6 4.8387 -10.7385 1.3347 21 6 5.7813 -10.9021 0.1611 22 6 5.8177 -12.4008 0.4851 23 6 5.4655 -11.9851 1.9222 24 6 1.9320 -3.7274 0.0005 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5998 -1.7589 0.6142 27 1 -0.5264 -2.4851 -1.0194 28 1 -1.3589 -4.3329 0.2768 29 1 -0.3532 -3.8980 1.6994 30 1 1.4502 -5.5608 1.9077 31 1 0.2440 -6.5627 1.0653 32 1 1.9237 -7.1261 -0.6696 33 1 3.1298 -6.1241 0.1728 34 1 2.1026 -8.0098 2.0070 35 1 3.3510 -10.0238 2.6183 36 1 5.3218 -10.6770 -0.8013 37 1 6.7403 -10.4029 0.2997 38 1 6.8054 -12.8512 0.3867 39 1 5.0352 -12.9739 -0.0121 40 1 6.3380 -11.7829 2.5435 41 1 4.7471 -12.6485 2.4040 42 1 2.5580 -3.8509 0.8843 43 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481422452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:38 Heat of formation + Delta-G solvation = 17.774012 kcal Electronic energy + Delta-G solvation = -20864.379957 eV Core-core repulsion = 17717.939538 eV Total energy + Delta-G solvation = -3146.440419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.93232 -38.59526 -37.70864 -35.11601 -33.01108 -31.45216 -30.42717 -28.90630 -26.58466 -26.07259 -24.82088 -23.49496 -22.16076 -20.88735 -20.05539 -19.37670 -18.38076 -17.03459 -16.84547 -16.06621 -15.81544 -15.59413 -14.86160 -14.68212 -14.52039 -14.01373 -13.60709 -13.50195 -12.77604 -12.48764 -12.30935 -12.22557 -12.03406 -11.84360 -11.66106 -11.55018 -11.32174 -11.03502 -10.87091 -10.81311 -10.73637 -10.11995 -10.05138 -9.92160 -9.75904 -9.68010 -9.48220 -9.41373 -8.96951 -8.60563 -6.77525 -5.60851 -3.02054 1.17104 3.14248 3.25957 3.42868 3.47634 3.49654 4.09693 4.19078 4.43474 4.53176 4.77630 4.90771 5.01561 5.14917 5.19073 5.30188 5.34361 5.36459 5.48369 5.52165 5.64000 5.65835 5.70599 5.82527 5.89473 5.93222 5.99070 6.06532 6.23914 6.27392 6.35516 6.43049 6.49200 6.64924 6.68592 6.82112 7.02964 7.52310 7.57381 7.68155 7.90463 8.24371 8.41540 9.27319 9.88464 10.54063 11.43112 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034117 B = 0.002635 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.508256 B =10624.016760 C =11162.923344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.116 4.116 15 C 0.118 3.882 16 N -0.726 5.726 17 C 0.546 3.454 18 O -0.543 6.543 19 C -0.199 4.199 20 C -0.064 4.064 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.109 4.109 24 C 0.140 3.860 25 H 0.251 0.749 26 H 0.105 0.895 27 H 0.010 0.990 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.022 0.978 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 -23.829 5.491 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.090 0.910 14 C -0.154 4.154 15 C -0.005 4.005 16 N -0.377 5.377 17 C 0.335 3.665 18 O -0.422 6.422 19 C -0.219 4.219 20 C -0.066 4.066 21 C -0.143 4.143 22 C -0.180 4.180 23 C -0.145 4.145 24 C 0.014 3.986 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.040 0.960 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.887 -23.456 4.727 24.641 hybrid contribution 0.115 0.812 0.396 0.910 sum 6.002 -22.645 5.122 23.980 Atomic orbital electron populations 1.69802 1.04879 1.24664 1.57928 1.24787 0.95735 0.97699 1.02654 0.86073 0.78516 0.83375 0.77564 1.21661 1.21681 1.20721 1.19101 0.90522 0.82572 1.42660 0.90550 1.44527 1.02025 0.99830 1.86778 1.21924 0.84694 0.92670 0.98128 1.23033 0.95867 0.98836 0.99955 1.22093 0.97501 0.93782 0.98346 0.90999 1.21782 0.97159 0.96702 0.99757 1.21485 0.98831 0.86705 0.93485 1.45966 1.38397 1.28262 1.25052 1.18427 0.79685 0.82499 0.85937 1.90783 1.51761 1.74760 1.24929 1.21621 1.02871 0.96250 1.01195 1.23471 0.93207 0.92914 0.97036 1.22226 0.98800 0.95083 0.98218 1.22738 1.02400 0.96765 0.96143 1.22358 1.00574 0.94102 0.97504 1.21361 0.93690 0.85897 0.97679 0.93808 0.87703 0.97153 0.92509 0.92208 0.91196 0.91674 0.91576 0.90998 0.76678 0.85051 0.89467 0.88396 0.90399 0.89755 0.88118 0.90434 0.95994 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 10.09 55.49 0.56 -26.89 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.32 10.27 -15.06 -0.15 -6.48 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -16.01 3.39 -170.07 -0.58 -16.59 16 10 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 11 C -0.14 -2.60 6.54 -24.58 -0.16 -2.76 16 12 C -0.10 -1.68 2.95 -88.79 -0.26 -1.94 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.12 -1.53 4.73 -26.73 -0.13 -1.65 16 15 C 0.12 1.59 5.54 -4.05 -0.02 1.56 16 16 N -0.73 -8.30 5.55 -61.50 -0.34 -8.64 16 17 C 0.55 7.14 7.76 -12.67 -0.10 7.05 16 18 O -0.54 -9.19 15.15 5.27 0.08 -9.11 16 19 C -0.20 -1.95 10.03 -37.81 -0.38 -2.33 16 20 C -0.06 -0.60 6.93 -100.48 -0.70 -1.30 16 21 C -0.11 -0.99 6.99 -27.55 -0.19 -1.19 16 22 C -0.14 -0.94 8.17 -26.19 -0.21 -1.15 16 23 C -0.11 -0.69 7.96 -27.39 -0.22 -0.90 16 24 C 0.14 3.00 6.10 -3.07 -0.02 2.98 16 25 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 27 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 30 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.11 7.58 -51.93 -0.39 0.72 16 34 H 0.40 3.33 8.46 -40.82 -0.35 2.99 16 35 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.09 0.99 7.49 -51.93 -0.39 0.60 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -33.37 347.35 -10.01 -43.38 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.29 Total: -0.01 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.65 Total: -4.89 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.36 Total: -52.12 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.37 -10.01 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481422452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.154 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds