Wall clock time and date at job start Tue Mar 31 2020 00:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48502 * 109.46881 * 269.99916 * 3 2 1 5 5 H 1.48499 * 109.47149 * 29.99553 * 3 2 1 6 6 H 1.48496 * 109.47418 * 149.99816 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21614 * 120.00155 * 0.02562 * 17 16 15 19 19 C 1.47097 * 119.99800 * 179.97438 * 17 16 15 20 20 C 1.32996 * 120.00018 * 179.97438 * 19 17 16 21 21 C 1.51414 * 136.31515 * 359.63944 * 20 19 17 22 22 C 1.53375 * 87.51621 * 206.05060 * 21 20 19 23 23 C 1.51402 * 136.31915 * 179.97438 * 20 19 17 24 24 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 25 25 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 26 26 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 27 27 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 28 28 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 29 29 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 30 30 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 31 31 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 32 32 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 33 33 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 34 34 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 35 35 H 1.08007 * 120.00301 * 0.02562 * 19 17 16 36 36 H 1.08997 * 113.55255 * 320.63312 * 21 20 19 37 37 H 1.08997 * 113.55914 * 91.36255 * 21 20 19 38 38 H 1.08999 * 113.96822 * 220.29108 * 22 21 20 39 39 H 1.08993 * 113.60210 * 88.79467 * 22 21 20 40 40 H 1.09001 * 113.56813 * 268.63474 * 23 20 19 41 41 H 1.09007 * 113.56133 * 39.37374 * 23 20 19 42 42 H 1.08998 * 109.88222 * 59.56024 * 24 9 7 43 43 H 1.09005 * 110.01447 * 298.46604 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1490 -8.5919 -0.2325 19 6 3.8830 -9.8841 1.6888 20 6 4.8387 -10.7385 1.3347 21 6 5.7813 -10.9021 0.1611 22 6 5.8177 -12.4008 0.4851 23 6 5.4655 -11.9851 1.9222 24 6 1.9320 -3.7274 0.0005 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5998 -1.7589 0.6142 27 1 -0.5264 -2.4851 -1.0194 28 1 -1.3589 -4.3329 0.2768 29 1 -0.3532 -3.8980 1.6994 30 1 1.4502 -5.5608 1.9077 31 1 0.2440 -6.5627 1.0653 32 1 1.9237 -7.1261 -0.6696 33 1 3.1298 -6.1241 0.1728 34 1 2.1026 -8.0098 2.0070 35 1 3.3510 -10.0238 2.6183 36 1 5.3218 -10.6770 -0.8013 37 1 6.7403 -10.4029 0.2997 38 1 6.8054 -12.8512 0.3867 39 1 5.0352 -12.9739 -0.0121 40 1 6.3380 -11.7829 2.5435 41 1 4.7471 -12.6485 2.4040 42 1 2.5580 -3.8509 0.8843 43 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481422452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:37 Heat of formation + Delta-G solvation = -3.306018 kcal Electronic energy + Delta-G solvation = -20865.294056 eV Core-core repulsion = 17717.939538 eV Total energy + Delta-G solvation = -3147.354518 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86496 -39.56677 -39.09586 -36.40950 -34.74792 -32.74051 -31.69287 -30.57924 -28.15561 -26.70617 -26.57413 -24.50450 -23.32456 -22.01748 -21.72567 -20.79320 -19.18439 -18.90093 -17.92679 -17.07292 -16.97763 -16.61357 -16.41254 -16.01182 -15.66815 -15.30751 -14.95913 -14.76581 -14.27955 -13.79895 -13.53696 -13.35258 -13.33019 -13.11185 -12.91444 -12.83997 -12.69129 -12.63541 -12.24391 -12.00540 -11.90722 -11.78901 -11.61827 -11.44501 -11.41523 -11.23802 -10.76283 -10.67372 -10.31383 -9.90405 -8.89003 -7.78643 -5.23172 0.39190 1.44365 1.46676 1.55537 2.22481 2.33408 2.48475 3.29969 3.42057 3.60096 3.73674 3.75425 3.84126 3.93764 4.15134 4.20435 4.26790 4.34094 4.36132 4.61395 4.63649 4.70430 4.73283 4.75047 4.86333 4.88506 4.94911 5.02584 5.04737 5.10659 5.18590 5.25286 5.27827 5.35915 5.42658 5.48172 5.50781 5.68463 5.68698 5.82827 6.31535 6.64881 7.10646 7.31063 7.78481 8.42428 9.23062 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034117 B = 0.002635 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.508256 B =10624.016760 C =11162.923344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.629 5.629 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.085 4.085 13 H 0.077 0.923 14 C -0.098 4.098 15 C 0.124 3.876 16 N -0.713 5.713 17 C 0.537 3.463 18 O -0.593 6.593 19 C -0.208 4.208 20 C -0.073 4.073 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.094 4.094 24 C 0.134 3.866 25 H 0.248 0.752 26 H 0.072 0.928 27 H -0.017 1.017 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.418 0.582 35 H 0.166 0.834 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.025 0.975 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -26.103 7.360 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.023 3.977 11 C -0.159 4.159 12 C -0.104 4.104 13 H 0.095 0.905 14 C -0.136 4.136 15 C 0.000 4.000 16 N -0.364 5.364 17 C 0.327 3.673 18 O -0.476 6.476 19 C -0.229 4.229 20 C -0.075 4.075 21 C -0.160 4.160 22 C -0.171 4.171 23 C -0.130 4.130 24 C 0.009 3.991 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.001 0.999 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.255 0.745 35 H 0.184 0.816 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.043 0.957 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 6.029 -25.764 6.632 27.279 hybrid contribution 0.114 1.518 -0.259 1.545 sum 6.143 -24.246 6.373 25.811 Atomic orbital electron populations 1.70058 1.06160 1.25055 1.58578 1.25654 0.96723 1.01005 1.02698 0.85036 0.77625 0.78974 0.77443 1.21455 1.21542 1.19506 1.19459 0.90920 0.84088 1.42667 0.90618 1.44877 1.03001 1.00973 1.86708 1.21778 0.83865 0.95640 0.96378 1.22872 0.97870 0.95030 1.00137 1.22014 0.94796 0.93876 0.99730 0.90463 1.21618 0.98246 0.95225 0.98551 1.21250 0.97869 0.87036 0.93816 1.45799 1.38090 1.27170 1.25384 1.19089 0.79186 0.83253 0.85731 1.90763 1.53518 1.76078 1.27203 1.21729 1.03961 0.95213 1.01961 1.23940 0.92602 0.93754 0.97190 1.22347 0.98819 0.97711 0.97120 1.22732 1.03508 0.94543 0.96352 1.22377 1.01110 0.92209 0.97338 1.21558 0.95292 0.85119 0.97151 0.94266 0.90986 0.99936 0.89498 0.91274 0.90660 0.88293 0.92304 0.93647 0.74514 0.81619 0.92451 0.88460 0.88710 0.89602 0.86501 0.88524 0.95676 0.97300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.95 10.09 21.65 0.22 -57.73 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 3 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -14.24 10.27 84.03 0.86 -13.38 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -34.00 3.39 -691.98 -2.35 -36.35 16 10 C 0.15 7.50 5.89 86.85 0.51 8.02 16 11 C -0.12 -4.33 6.54 31.99 0.21 -4.12 16 12 C -0.08 -2.78 2.95 -9.61 -0.03 -2.80 16 13 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.10 -2.31 4.73 30.59 0.14 -2.16 16 15 C 0.12 3.19 5.54 86.38 0.48 3.67 16 16 N -0.71 -15.02 5.55 -466.72 -2.59 -17.61 16 17 C 0.54 13.69 7.76 86.57 0.67 14.36 16 18 O -0.59 -20.66 15.15 -4.08 -0.06 -20.72 16 19 C -0.21 -3.69 10.03 23.43 0.23 -3.46 16 20 C -0.07 -1.24 6.93 -17.17 -0.12 -1.36 16 21 C -0.12 -2.28 6.99 30.06 0.21 -2.07 16 22 C -0.13 -1.50 8.17 30.95 0.25 -1.24 16 23 C -0.09 -0.89 7.96 30.16 0.24 -0.65 16 24 C 0.13 5.78 6.10 86.73 0.53 6.31 16 25 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.07 4.13 5.87 -2.39 -0.01 4.11 16 27 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.37 8.05 -2.39 -0.02 2.35 16 30 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 31 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.41 7.58 -2.38 -0.02 1.40 16 34 H 0.42 5.65 8.46 -92.71 -0.78 4.87 16 35 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 36 H 0.06 1.39 7.49 -2.39 -0.02 1.37 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.03 1.07 7.73 -2.39 -0.02 1.05 16 43 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 Total: -1.00 -76.23 347.35 2.11 -74.12 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.20 Total: 11.69 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 4.66 Total: -2.43 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.72 Total: -111.70 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.06 Total: -20.72 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -76.23 2.11 -74.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481422452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.818 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds