Wall clock time and date at job start Tue Mar 31 2020 00:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48504 * 109.47054 * 270.00130 * 3 2 1 5 5 H 1.48494 * 109.47344 * 30.00186 * 3 2 1 6 6 H 1.48506 * 109.46969 * 150.00241 * 3 2 1 7 7 C 1.38811 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00589 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99790 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46863 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99970 * 125.00544 * 11 10 9 13 13 C 1.50701 * 119.99970 * 179.97438 * 12 11 10 14 14 N 1.46504 * 109.46741 * 124.99917 * 13 12 11 15 15 C 1.34783 * 119.99359 * 179.97438 * 14 13 12 16 16 O 1.21271 * 120.00229 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99388 * 179.97438 * 15 14 13 18 18 C 1.51847 * 108.64829 * 55.90925 * 17 15 14 19 19 C 1.53075 * 110.74326 * 187.60196 * 18 17 15 20 20 C 1.51374 * 108.61284 * 274.26135 * 19 18 17 21 21 C 1.29524 * 120.35881 * 71.88592 * 20 19 18 22 22 C 1.51367 * 120.36154 * 0.02562 * 21 20 19 23 23 C 1.51852 * 108.64739 * 179.97438 * 17 15 14 24 24 H 0.96999 * 119.99547 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00160 * 0.02562 * 9 7 2 26 26 H 1.09005 * 109.46674 * 60.00544 * 10 9 7 27 27 H 1.08998 * 109.47714 * 300.00487 * 10 9 7 28 28 H 1.08002 * 119.99857 * 305.00430 * 11 10 9 29 29 H 1.07998 * 119.99706 * 359.97438 * 12 11 10 30 30 H 1.09001 * 109.47275 * 5.00187 * 13 12 11 31 31 H 1.08997 * 109.46965 * 244.99692 * 13 12 11 32 32 H 0.96998 * 120.00265 * 359.97438 * 14 13 12 33 33 H 1.08997 * 108.60555 * 298.01591 * 17 15 14 34 34 H 1.08995 * 109.22433 * 307.92087 * 18 17 15 35 35 H 1.09000 * 109.22334 * 67.27131 * 18 17 15 36 36 H 1.08998 * 109.62653 * 154.51831 * 19 18 17 37 37 H 1.08994 * 109.60221 * 33.99306 * 19 18 17 38 38 H 1.08003 * 119.81809 * 252.15884 * 20 19 18 39 39 H 1.07998 * 119.81554 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.61525 * 47.81560 * 22 21 20 41 41 H 1.09001 * 109.61394 * 168.16738 * 22 21 20 42 42 H 1.09000 * 109.21815 * 52.07774 * 23 17 15 43 43 H 1.08999 * 109.18649 * 292.70562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0786 -4.8022 -0.0021 12 6 1.1473 -5.7224 -0.9320 13 6 0.1683 -6.8681 -0.9320 14 7 -0.5089 -6.9316 -2.2296 15 6 -1.4335 -7.8846 -2.4612 16 8 -1.7046 -8.6896 -1.5956 17 6 -2.1305 -7.9496 -3.7957 18 6 -1.0805 -8.0588 -4.8871 19 6 -1.7228 -7.9391 -6.2714 20 6 -2.2067 -9.3080 -6.6995 21 6 -3.2410 -9.8434 -6.1328 22 6 -3.9793 -9.1069 -5.0356 23 6 -3.1102 -9.1096 -3.7758 24 1 -0.4849 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6853 -3.7149 0.8879 27 1 2.6840 -3.7142 -0.8921 28 1 0.3202 -4.8645 0.7643 29 1 1.9054 -5.6599 -1.6985 30 1 -0.5695 -6.7157 -0.1443 31 1 0.7018 -7.8019 -0.7545 32 1 -0.2918 -6.2880 -2.9220 33 1 -2.6880 -7.0245 -3.9423 34 1 -0.3479 -7.2615 -4.7614 35 1 -0.5781 -9.0228 -4.8066 36 1 -0.9865 -7.5713 -6.9861 37 1 -2.5666 -7.2508 -6.2247 38 1 -1.6841 -9.8430 -7.4787 39 1 -3.5790 -10.8204 -6.4453 40 1 -4.1686 -8.0798 -5.3477 41 1 -4.9257 -9.6076 -4.8315 42 1 -3.7508 -9.0232 -2.8982 43 1 -2.5552 -10.0463 -3.7242 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483096885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:04 Heat of formation + Delta-G solvation = -11.751894 kcal Electronic energy + Delta-G solvation = -20706.383886 eV Core-core repulsion = 17558.663127 eV Total energy + Delta-G solvation = -3147.720758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38319 -38.14279 -36.27652 -34.73736 -33.26855 -32.58393 -32.03716 -30.53864 -27.51010 -25.92224 -24.31714 -23.94308 -22.08774 -21.48141 -20.21770 -19.36309 -18.30492 -17.45367 -17.11646 -16.51248 -15.93332 -15.40018 -14.83800 -14.74545 -14.17977 -14.00963 -13.72987 -13.55229 -13.28468 -13.25259 -13.18054 -12.66094 -12.40474 -12.03165 -11.99698 -11.82231 -11.55367 -11.05874 -11.02748 -10.90382 -10.84656 -10.63276 -10.61088 -10.10303 -9.92087 -9.81893 -9.31132 -9.23698 -8.99087 -8.71999 -6.97315 -5.80297 -3.09975 2.01640 2.27094 2.59613 3.34692 3.41357 3.46492 3.48400 4.30103 4.46988 4.51858 4.57375 4.74572 4.82012 4.88864 4.95515 5.10772 5.18286 5.24981 5.25400 5.38028 5.47177 5.52720 5.54138 5.61015 5.67176 5.78285 5.83409 5.89344 5.93772 5.98912 6.10363 6.11578 6.35752 6.38781 6.45599 6.55366 6.63009 6.88787 7.12888 7.47900 7.65959 8.18131 8.38063 9.49345 10.05527 10.40837 11.42430 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.002647 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.857014 B =10574.705283 C =11120.751950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.724 5.724 15 C 0.512 3.488 16 O -0.545 6.545 17 C -0.104 4.104 18 C -0.106 4.106 19 C -0.091 4.091 20 C -0.161 4.161 21 C -0.156 4.156 22 C -0.093 4.093 23 C -0.094 4.094 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.031 0.969 27 H 0.025 0.975 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -19.622 -12.550 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.375 5.375 15 C 0.299 3.701 16 O -0.422 6.422 17 C -0.125 4.125 18 C -0.144 4.144 19 C -0.128 4.128 20 C -0.179 4.179 21 C -0.174 4.174 22 C -0.131 4.131 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.219 0.781 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.919 -20.070 -11.883 23.837 hybrid contribution 0.323 1.238 -0.342 1.324 sum -4.596 -18.832 -12.224 22.917 Atomic orbital electron populations 1.69668 1.05147 1.25754 1.57524 1.24769 0.95566 0.97777 1.02855 0.86158 0.78649 0.83644 0.77544 1.21657 1.21701 1.20700 1.19246 0.91075 0.84013 1.43013 0.91069 1.42302 1.05947 0.99567 1.89596 1.19826 0.92613 0.84582 0.98431 1.23338 0.98256 0.94007 0.97013 1.22695 1.00987 0.97060 1.01358 1.20310 0.93856 0.97520 0.85142 1.46121 1.41232 1.33145 1.17044 1.20764 0.79337 0.80429 0.89616 1.90684 1.64083 1.40499 1.46962 1.21045 0.97360 1.01778 0.92353 1.21306 0.96945 1.03102 0.93072 1.20824 1.00718 0.95253 0.96048 1.22549 0.97840 0.97346 1.00118 1.22582 0.97419 0.99760 0.97635 1.20857 0.98055 1.00461 0.93689 1.21086 0.96952 0.97688 0.97457 0.93437 0.78140 0.95134 0.95688 0.87287 0.86790 0.91293 0.91206 0.76231 0.88621 0.91053 0.91160 0.90987 0.90684 0.87590 0.87615 0.90891 0.91170 0.90655 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.57 5.59 -61.08 -0.34 -18.91 16 10 C 0.17 3.44 6.70 -5.19 -0.03 3.40 16 11 C -0.11 -1.73 9.24 -36.03 -0.33 -2.06 16 12 C -0.20 -2.73 9.24 -36.03 -0.33 -3.06 16 13 C 0.15 1.97 6.11 -5.19 -0.03 1.94 16 14 N -0.72 -8.36 5.35 -61.47 -0.33 -8.69 16 15 C 0.51 6.37 7.14 -10.98 -0.08 6.29 16 16 O -0.54 -8.79 15.76 5.57 0.09 -8.71 16 17 C -0.10 -0.96 2.06 -92.94 -0.19 -1.15 16 18 C -0.11 -0.82 4.87 -27.28 -0.13 -0.96 16 19 C -0.09 -0.63 5.62 -27.51 -0.15 -0.78 16 20 C -0.16 -1.16 9.34 -35.28 -0.33 -1.49 16 21 C -0.16 -1.15 9.34 -35.29 -0.33 -1.48 16 22 C -0.09 -0.70 5.62 -27.53 -0.15 -0.85 16 23 C -0.09 -0.88 4.30 -27.29 -0.12 -0.99 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 25 H 0.39 10.31 7.66 -40.82 -0.31 9.99 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 28 H 0.11 1.74 7.84 -52.49 -0.41 1.33 16 29 H 0.11 1.45 7.84 -52.49 -0.41 1.04 16 30 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.40 3.93 7.47 -40.82 -0.30 3.62 16 33 H 0.10 0.79 7.89 -51.93 -0.41 0.38 16 34 H 0.07 0.50 6.99 -51.93 -0.36 0.14 16 35 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.50 6.68 -51.93 -0.35 0.16 16 38 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.07 0.52 6.68 -51.93 -0.35 0.17 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.79 7.77 -51.93 -0.40 0.38 16 43 H 0.07 0.72 7.85 -51.93 -0.41 0.32 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -32.24 348.63 -9.11 -41.35 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.02 Total: 8.53 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.47 Total: -8.61 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.05 Total: -55.06 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.24 -9.11 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483096885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.596 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds