Wall clock time and date at job start Tue Mar 31 2020 00:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99453 * 2 1 4 4 H 1.48506 * 109.46581 * 239.99782 * 3 2 1 5 5 H 1.48500 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47208 * 120.00016 * 3 2 1 7 7 C 1.38806 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00434 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.06111 * 0.04540 * 9 7 2 11 11 C 1.53614 * 88.00796 * 207.04057 * 10 9 7 12 12 C 1.47073 * 136.05443 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.46666 * 267.74955 * 12 9 7 14 14 C 1.52997 * 113.46827 * 38.13041 * 12 9 7 15 15 N 1.46496 * 109.47194 * 284.58725 * 14 12 9 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.64468 * 54.58329 * 19 18 16 21 21 C 1.53031 * 109.64173 * 293.94072 * 19 18 16 22 22 C 1.50059 * 110.14503 * 190.87992 * 21 19 18 23 23 C 1.29440 * 124.08097 * 17.13882 * 22 21 19 24 24 C 1.50073 * 124.07472 * 359.52555 * 23 22 21 25 25 C 1.53023 * 110.14498 * 17.13265 * 24 23 22 26 26 H 0.96994 * 120.00562 * 0.02562 * 1 2 3 27 27 H 1.09001 * 113.46698 * 321.87155 * 10 9 7 28 28 H 1.08999 * 113.46772 * 92.24972 * 10 9 7 29 29 H 1.09002 * 114.23823 * 220.41008 * 11 10 9 30 30 H 1.08997 * 114.20861 * 87.54579 * 11 10 9 31 31 H 1.09002 * 109.47045 * 164.58852 * 14 12 9 32 32 H 1.09001 * 109.47375 * 44.58777 * 14 12 9 33 33 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 34 34 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 35 35 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 36 36 H 1.08997 * 109.35744 * 311.09484 * 21 19 18 37 37 H 1.09006 * 109.35070 * 70.67603 * 21 19 18 38 38 H 1.08000 * 117.96330 * 197.10994 * 22 21 19 39 39 H 1.08001 * 117.96894 * 179.55054 * 23 22 21 40 40 H 1.09003 * 109.35752 * 256.92774 * 24 23 22 41 41 H 1.08998 * 109.25061 * 137.26983 * 24 23 22 42 42 H 1.08999 * 109.64327 * 190.88262 * 25 24 23 43 43 H 1.09003 * 109.81879 * 70.34865 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.0875 -2.7949 -0.0007 11 6 0.3413 -4.0937 0.6985 12 6 1.6802 -3.8154 0.0015 13 1 1.7475 -4.2465 -0.9974 14 6 2.8977 -4.1402 0.8691 15 7 4.1170 -3.7095 0.1805 16 6 5.3196 -3.8951 0.7600 17 8 5.3924 -4.4191 1.8513 18 6 6.5737 -3.4515 0.0519 19 6 7.7913 -3.7765 0.9195 20 1 7.7847 -4.8353 1.1783 21 6 7.7552 -2.9305 2.1942 22 6 9.0621 -3.0389 2.9236 23 6 10.1575 -3.4737 2.3885 24 6 10.2714 -3.9398 0.9665 25 6 9.0761 -3.4415 0.1513 26 1 -0.4851 0.8399 -0.0004 27 1 -0.7229 -2.1588 0.6155 28 1 -0.4927 -2.9533 -1.0001 29 1 -0.1724 -4.9857 0.3399 30 1 0.3808 -4.0241 1.7855 31 1 2.9411 -5.2148 1.0466 32 1 2.8147 -3.6176 1.8220 33 1 4.0587 -3.2900 -0.6922 34 1 6.5300 -2.3769 -0.1256 35 1 6.6571 -3.9740 -0.9010 36 1 7.5734 -1.8885 1.9313 37 1 6.9508 -3.2838 2.8395 38 1 9.0906 -2.7348 3.9595 39 1 11.0448 -3.5033 3.0035 40 1 10.2949 -5.0293 0.9442 41 1 11.1922 -3.5496 0.5331 42 1 9.0623 -3.9372 -0.8194 43 1 9.1484 -2.3630 0.0109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483672566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:13 Heat of formation + Delta-G solvation = 14.721630 kcal Electronic energy + Delta-G solvation = -21831.583286 eV Core-core repulsion = 18685.010506 eV Total energy + Delta-G solvation = -3146.572780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.80737 -38.48079 -37.74771 -33.99667 -32.76710 -32.21919 -30.76764 -28.57925 -27.94019 -26.37030 -23.48799 -23.27428 -22.15008 -21.14401 -19.96823 -19.16710 -17.98681 -17.01100 -16.31180 -16.11873 -15.48595 -15.35143 -14.80017 -14.34557 -14.19488 -13.89787 -13.52446 -13.28518 -13.02866 -12.80063 -12.54134 -12.33064 -12.03778 -11.92423 -11.59488 -11.42931 -11.12079 -10.98427 -10.78503 -10.70362 -10.60316 -10.55839 -10.16573 -9.99637 -9.85993 -9.51247 -9.14962 -8.95902 -8.82874 -8.50781 -6.91934 -5.78801 -3.11519 2.29509 3.01814 3.36110 3.40748 3.42237 3.61587 4.41249 4.62110 4.67242 4.81280 5.08279 5.14447 5.19355 5.30293 5.32887 5.38997 5.49559 5.55055 5.58193 5.66286 5.73042 5.76596 5.79546 5.82111 5.91470 5.95100 6.11907 6.14281 6.29875 6.33891 6.40709 6.43072 6.58801 6.65244 6.72728 6.92431 6.99198 7.20913 7.38148 7.55588 7.95165 7.96164 8.63531 9.00726 9.68182 10.61280 11.38384 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.004383 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.245655 B = 6386.484553 C = 7440.666938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.162 4.162 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.551 6.551 18 C -0.139 4.139 19 C -0.067 4.067 20 H 0.079 0.921 21 C -0.095 4.095 22 C -0.140 4.140 23 C -0.172 4.172 24 C -0.087 4.087 25 C -0.117 4.117 26 H 0.254 0.746 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.431 -8.540 -0.531 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.201 4.201 12 C 0.020 3.980 13 H 0.064 0.936 14 C -0.003 4.003 15 N -0.366 5.366 16 C 0.295 3.705 17 O -0.429 6.429 18 C -0.179 4.179 19 C -0.086 4.086 20 H 0.097 0.903 21 C -0.132 4.132 22 C -0.158 4.158 23 C -0.190 4.190 24 C -0.124 4.124 25 C -0.155 4.155 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.492 -8.520 0.255 16.813 hybrid contribution 0.409 1.258 -0.519 1.421 sum 14.901 -7.262 -0.264 16.578 Atomic orbital electron populations 1.69814 1.04981 1.25413 1.56347 1.24771 0.95630 0.97410 1.02541 0.86266 0.78559 0.83444 0.77890 1.21214 1.21530 1.21112 1.18795 0.89965 0.81361 1.44029 0.90265 1.45665 1.02599 0.98576 1.85879 1.22046 0.88719 0.90177 0.96470 1.23675 0.96999 0.99022 1.00383 1.22404 0.92110 0.87723 0.95801 0.93552 1.21771 0.83244 0.98256 0.97031 1.46023 1.06030 1.61677 1.22838 1.20602 0.85031 0.78737 0.86126 1.90629 1.87203 1.44230 1.20875 1.21777 0.92854 1.03421 0.99874 1.20918 0.92227 1.01008 0.94484 0.90258 1.20659 0.96140 0.99755 0.96639 1.22138 0.94806 0.99413 0.99483 1.21975 0.97829 1.02277 0.96954 1.20396 0.98296 1.00593 0.93097 1.21692 0.94175 1.01411 0.98191 0.93620 0.91004 0.95779 0.92356 0.90229 0.92454 0.91210 0.76369 0.88868 0.89130 0.91238 0.88917 0.88289 0.88448 0.91147 0.91411 0.91689 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 11.51 55.49 0.64 -26.20 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.21 -5.68 10.55 -15.06 -0.16 -5.84 16 8 H 0.08 2.00 7.68 -52.49 -0.40 1.60 16 9 N -0.60 -14.53 3.65 -176.78 -0.65 -15.17 16 10 C 0.15 3.45 7.40 -8.44 -0.06 3.39 16 11 C -0.16 -2.94 8.04 -26.16 -0.21 -3.15 16 12 C 0.13 2.43 4.10 -72.40 -0.30 2.13 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.19 5.52 -4.05 -0.02 2.17 16 15 N -0.72 -11.83 5.41 -60.30 -0.33 -12.15 16 16 C 0.51 8.18 7.59 -10.98 -0.08 8.10 16 17 O -0.55 -10.51 14.09 5.56 0.08 -10.43 16 18 C -0.14 -1.69 5.17 -27.88 -0.14 -1.84 16 19 C -0.07 -0.81 1.87 -90.40 -0.17 -0.98 16 20 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 21 C -0.10 -1.26 5.05 -28.18 -0.14 -1.40 16 22 C -0.14 -1.66 9.80 -35.90 -0.35 -2.02 16 23 C -0.17 -1.82 9.80 -35.90 -0.35 -2.17 16 24 C -0.09 -0.81 6.12 -28.17 -0.17 -0.98 16 25 C -0.12 -1.14 5.31 -26.51 -0.14 -1.28 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.40 6.29 8.47 -40.82 -0.35 5.95 16 34 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 37 H 0.09 1.46 6.30 -51.93 -0.33 1.13 16 38 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -30.90 344.98 -9.81 -40.71 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.33 Total: 5.43 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.40 Total: -4.14 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.33 Total: -53.52 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.90 -9.81 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.431 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds