Wall clock time and date at job start Tue Mar 31 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99453 * 2 1 4 4 H 1.48506 * 109.46581 * 239.99782 * 3 2 1 5 5 H 1.48500 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47208 * 120.00016 * 3 2 1 7 7 C 1.38806 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00434 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.06111 * 0.04540 * 9 7 2 11 11 C 1.53614 * 88.00796 * 207.04057 * 10 9 7 12 12 C 1.47073 * 136.05443 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.46666 * 267.74955 * 12 9 7 14 14 C 1.52997 * 113.46827 * 38.13041 * 12 9 7 15 15 N 1.46496 * 109.47194 * 284.58725 * 14 12 9 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.64468 * 54.58329 * 19 18 16 21 21 C 1.53031 * 109.64173 * 293.94072 * 19 18 16 22 22 C 1.50059 * 110.14503 * 190.87992 * 21 19 18 23 23 C 1.29440 * 124.08097 * 17.13882 * 22 21 19 24 24 C 1.50073 * 124.07472 * 359.52555 * 23 22 21 25 25 C 1.53023 * 110.14498 * 17.13265 * 24 23 22 26 26 H 0.96994 * 120.00562 * 0.02562 * 1 2 3 27 27 H 1.09001 * 113.46698 * 321.87155 * 10 9 7 28 28 H 1.08999 * 113.46772 * 92.24972 * 10 9 7 29 29 H 1.09002 * 114.23823 * 220.41008 * 11 10 9 30 30 H 1.08997 * 114.20861 * 87.54579 * 11 10 9 31 31 H 1.09002 * 109.47045 * 164.58852 * 14 12 9 32 32 H 1.09001 * 109.47375 * 44.58777 * 14 12 9 33 33 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 34 34 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 35 35 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 36 36 H 1.08997 * 109.35744 * 311.09484 * 21 19 18 37 37 H 1.09006 * 109.35070 * 70.67603 * 21 19 18 38 38 H 1.08000 * 117.96330 * 197.10994 * 22 21 19 39 39 H 1.08001 * 117.96894 * 179.55054 * 23 22 21 40 40 H 1.09003 * 109.35752 * 256.92774 * 24 23 22 41 41 H 1.08998 * 109.25061 * 137.26983 * 24 23 22 42 42 H 1.08999 * 109.64327 * 190.88262 * 25 24 23 43 43 H 1.09003 * 109.81879 * 70.34865 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.0875 -2.7949 -0.0007 11 6 0.3413 -4.0937 0.6985 12 6 1.6802 -3.8154 0.0015 13 1 1.7475 -4.2465 -0.9974 14 6 2.8977 -4.1402 0.8691 15 7 4.1170 -3.7095 0.1805 16 6 5.3196 -3.8951 0.7600 17 8 5.3924 -4.4191 1.8513 18 6 6.5737 -3.4515 0.0519 19 6 7.7913 -3.7765 0.9195 20 1 7.7847 -4.8353 1.1783 21 6 7.7552 -2.9305 2.1942 22 6 9.0621 -3.0389 2.9236 23 6 10.1575 -3.4737 2.3885 24 6 10.2714 -3.9398 0.9665 25 6 9.0761 -3.4415 0.1513 26 1 -0.4851 0.8399 -0.0004 27 1 -0.7229 -2.1588 0.6155 28 1 -0.4927 -2.9533 -1.0001 29 1 -0.1724 -4.9857 0.3399 30 1 0.3808 -4.0241 1.7855 31 1 2.9411 -5.2148 1.0466 32 1 2.8147 -3.6176 1.8220 33 1 4.0587 -3.2900 -0.6922 34 1 6.5300 -2.3769 -0.1256 35 1 6.6571 -3.9740 -0.9010 36 1 7.5734 -1.8885 1.9313 37 1 6.9508 -3.2838 2.8395 38 1 9.0906 -2.7348 3.9595 39 1 11.0448 -3.5033 3.0035 40 1 10.2949 -5.0293 0.9442 41 1 11.1922 -3.5496 0.5331 42 1 9.0623 -3.9372 -0.8194 43 1 9.1484 -2.3630 0.0109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483672566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:12 Heat of formation + Delta-G solvation = -3.835054 kcal Electronic energy + Delta-G solvation = -21832.387964 eV Core-core repulsion = 18685.010506 eV Total energy + Delta-G solvation = -3147.377458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04519 -39.93276 -38.93652 -35.42760 -34.23221 -33.71221 -31.59678 -30.06778 -29.68763 -27.57780 -25.38771 -24.19982 -23.55826 -22.24464 -21.31407 -20.79188 -18.92462 -18.64448 -17.71791 -17.19547 -17.07450 -16.63819 -16.27294 -15.78509 -15.51291 -15.21844 -14.82899 -14.69684 -14.29024 -13.80832 -13.74775 -13.47042 -13.28102 -13.17949 -12.93827 -12.93260 -12.68536 -12.60185 -12.40381 -12.34521 -11.83643 -11.64785 -11.61766 -11.49661 -11.13907 -10.99444 -10.83623 -10.54667 -9.94785 -9.81438 -8.88352 -7.86311 -5.18100 1.43042 1.44369 1.47204 1.52513 1.75341 2.33919 2.49116 3.35918 3.44992 3.72320 3.78256 3.86131 3.95857 4.11507 4.20230 4.29511 4.35753 4.44100 4.49403 4.59020 4.65410 4.70215 4.75448 4.78136 4.82930 4.88700 4.97305 5.05193 5.06180 5.10594 5.13910 5.23846 5.33782 5.38980 5.51268 5.54964 5.61231 5.75300 5.80249 5.97905 6.10001 6.66926 6.94575 7.36001 7.65489 8.65312 9.31323 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.004383 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.245655 B = 6386.484553 C = 7440.666938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.207 4.207 8 H 0.088 0.912 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.137 4.137 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.131 3.869 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.584 6.584 18 C -0.132 4.132 19 C -0.065 4.065 20 H 0.064 0.936 21 C -0.093 4.093 22 C -0.168 4.168 23 C -0.160 4.160 24 C -0.091 4.091 25 C -0.112 4.112 26 H 0.245 0.755 27 H 0.034 0.966 28 H 0.023 0.977 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.408 0.592 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.816 -9.738 -1.950 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.225 1.225 6 H -0.211 1.211 7 C -0.335 4.335 8 H 0.106 0.894 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.006 3.994 15 N -0.366 5.366 16 C 0.292 3.708 17 O -0.465 6.465 18 C -0.171 4.171 19 C -0.084 4.084 20 H 0.083 0.917 21 C -0.130 4.130 22 C -0.186 4.186 23 C -0.178 4.178 24 C -0.128 4.128 25 C -0.150 4.150 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.243 0.757 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.907 -9.749 -1.182 19.552 hybrid contribution -0.307 1.531 -0.043 1.562 sum 16.600 -8.219 -1.225 18.564 Atomic orbital electron populations 1.70006 1.06367 1.25272 1.58853 1.25538 0.96404 1.00565 1.03894 0.85305 0.77230 0.79612 0.78165 1.19738 1.22521 1.21075 1.19187 0.90616 0.82437 1.41302 0.89389 1.45986 1.03587 1.00068 1.85882 1.22059 0.87854 0.92051 0.96324 1.23501 0.96043 0.98097 0.99881 1.22540 0.92975 0.84711 0.96952 0.91276 1.21519 0.83701 0.98824 0.95358 1.46032 1.05822 1.61784 1.22989 1.21334 0.85876 0.77804 0.85752 1.90624 1.87693 1.45735 1.22481 1.21827 0.90525 1.04155 1.00635 1.20886 0.93575 0.99744 0.94147 0.91711 1.20559 0.95900 0.99534 0.97050 1.22123 0.94849 1.01872 0.99790 1.22283 0.97657 0.99884 0.97933 1.20505 0.99007 1.01141 0.92106 1.21681 0.92709 1.01792 0.98779 0.94623 0.94723 0.95928 0.88225 0.90491 0.90657 0.94527 0.75687 0.87986 0.86019 0.91792 0.92366 0.88363 0.86893 0.90363 0.89322 0.89592 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.45 11.51 21.65 0.25 -57.20 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.21 -10.98 10.55 84.03 0.89 -10.10 16 8 H 0.09 4.38 7.68 -2.91 -0.02 4.36 16 9 N -0.63 -30.23 3.65 -713.22 -2.61 -32.84 16 10 C 0.14 6.53 7.40 83.22 0.62 7.15 16 11 C -0.14 -4.71 8.04 30.96 0.25 -4.46 16 12 C 0.13 4.88 4.10 41.79 0.17 5.06 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.13 4.57 5.52 86.38 0.48 5.04 16 15 N -0.72 -22.60 5.41 -463.07 -2.50 -25.11 16 16 C 0.50 15.71 7.59 87.66 0.67 16.37 16 17 O -0.58 -22.42 14.09 -3.02 -0.04 -22.46 16 18 C -0.13 -2.92 5.17 29.85 0.15 -2.76 16 19 C -0.06 -1.45 1.87 -10.65 -0.02 -1.47 16 20 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 21 C -0.09 -2.48 5.05 29.66 0.15 -2.33 16 22 C -0.17 -3.92 9.80 27.04 0.27 -3.65 16 23 C -0.16 -3.04 9.80 27.04 0.27 -2.77 16 24 C -0.09 -1.40 6.12 29.66 0.18 -1.22 16 25 C -0.11 -1.83 5.31 30.74 0.16 -1.67 16 26 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.03 1.83 7.12 -2.39 -0.02 1.81 16 28 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.41 11.91 8.47 -92.70 -0.79 11.13 16 34 H 0.10 2.13 8.09 -2.39 -0.02 2.11 16 35 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16 37 H 0.06 1.93 6.30 -2.38 -0.02 1.91 16 38 H 0.10 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 Total: -1.00 -68.88 344.98 2.01 -66.87 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.19 Total: 23.74 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 4.69 Total: -0.35 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -4.86 Total: -115.15 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.04 Total: -22.46 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.88 2.01 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.037 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds