Wall clock time and date at job start Tue Mar 31 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99899 * 2 1 4 4 H 1.48496 * 109.47055 * 240.00181 * 3 2 1 5 5 H 1.48502 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47162 * 119.99731 * 3 2 1 7 7 C 1.38811 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99792 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.47064 * 136.05738 * 0.04378 * 9 7 2 11 11 C 1.53500 * 87.97988 * 152.84903 * 10 9 7 12 12 C 1.47064 * 136.05267 * 180.02562 * 9 7 2 13 13 H 1.09005 * 113.46484 * 92.31942 * 12 9 7 14 14 C 1.52997 * 113.46992 * 321.93335 * 12 9 7 15 15 N 1.46497 * 109.46983 * 74.50752 * 14 12 9 16 16 C 1.34780 * 119.99566 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.64070 * 55.41919 * 19 18 16 21 21 C 1.53027 * 109.64185 * 295.00119 * 19 18 16 22 22 C 1.50073 * 110.14441 * 190.87760 * 21 19 18 23 23 C 1.29438 * 124.07742 * 17.12942 * 22 21 19 24 24 C 1.50062 * 124.07589 * 359.50822 * 23 22 21 25 25 C 1.53034 * 110.14119 * 17.17030 * 24 23 22 26 26 H 0.96996 * 120.00172 * 0.02562 * 1 2 3 27 27 H 1.09000 * 113.47099 * 267.62886 * 10 9 7 28 28 H 1.08998 * 113.46636 * 38.07478 * 10 9 7 29 29 H 1.08994 * 114.20779 * 272.47666 * 11 10 9 30 30 H 1.09002 * 114.20287 * 139.65629 * 11 10 9 31 31 H 1.09001 * 109.46832 * 314.50568 * 14 12 9 32 32 H 1.09002 * 109.47153 * 194.50759 * 14 12 9 33 33 H 0.96995 * 120.00423 * 359.97438 * 15 14 12 34 34 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 35 35 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 36 36 H 1.09004 * 109.35604 * 311.08296 * 21 19 18 37 37 H 1.08996 * 109.36228 * 70.81105 * 21 19 18 38 38 H 1.08004 * 117.95862 * 197.15061 * 22 21 19 39 39 H 1.07998 * 117.96284 * 179.52895 * 23 22 21 40 40 H 1.09003 * 109.36073 * 137.35901 * 24 23 22 41 41 H 1.08997 * 109.36070 * 256.94516 * 24 23 22 42 42 H 1.09004 * 109.63716 * 190.86121 * 25 24 23 43 43 H 1.08997 * 109.66229 * 70.21909 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.0877 -2.7948 -0.0032 11 6 0.3425 -4.0914 -0.7032 12 6 1.6800 -3.8154 -0.0020 13 1 1.7445 -4.2468 0.9970 14 6 2.8998 -4.1401 -0.8665 15 7 4.1156 -3.6900 -0.1842 16 6 5.3194 -3.8721 -0.7624 17 8 5.3962 -4.4089 -1.8472 18 6 6.5701 -3.4096 -0.0603 19 6 7.7900 -3.7342 -0.9248 20 1 7.6666 -3.2919 -1.9134 21 6 7.9389 -5.2516 -1.0553 22 6 9.2655 -5.5898 -1.6701 23 6 10.2628 -4.7677 -1.7406 24 6 10.2284 -3.3581 -1.2271 25 6 9.0557 -3.1779 -0.2605 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4945 -2.9549 0.9953 28 1 -0.7219 -2.1583 -0.6203 29 1 0.3843 -4.0200 -1.7900 30 1 -0.1727 -4.9836 -0.3473 31 1 2.8114 -3.6300 -1.8257 32 1 2.9526 -5.2163 -1.0308 33 1 4.0542 -3.2604 0.6832 34 1 6.5173 -2.3335 0.1048 35 1 6.6586 -3.9204 0.8986 36 1 7.8717 -5.7075 -0.0675 37 1 7.1405 -5.6401 -1.6876 38 1 9.3960 -6.5807 -2.0794 39 1 11.1764 -5.1179 -2.1979 40 1 11.1614 -3.1400 -0.7074 41 1 10.1150 -2.6708 -2.0653 42 1 8.9198 -2.1185 -0.0429 43 1 9.2544 -3.7222 0.6627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483672567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:16 Heat of formation + Delta-G solvation = 15.013926 kcal Electronic energy + Delta-G solvation = -21777.142690 eV Core-core repulsion = 18630.582585 eV Total energy + Delta-G solvation = -3146.560105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81697 -38.49178 -37.75284 -33.99513 -32.77561 -32.22119 -30.78590 -28.58721 -27.94102 -26.37853 -23.48673 -23.29046 -22.15208 -21.15122 -19.96791 -19.16743 -18.00733 -17.01916 -16.30249 -16.13949 -15.48672 -15.36470 -14.79033 -14.42513 -14.14310 -13.87188 -13.50761 -13.36873 -13.06844 -12.70642 -12.59053 -12.32866 -12.12709 -11.90127 -11.57282 -11.43489 -11.12066 -10.97996 -10.78397 -10.71795 -10.59621 -10.57997 -10.18307 -9.98947 -9.85843 -9.52405 -9.15587 -8.97197 -8.82873 -8.50632 -6.91949 -5.78844 -3.11530 2.25992 3.02090 3.36197 3.40812 3.42313 3.61713 4.41325 4.60732 4.66507 4.80324 5.07880 5.15598 5.18434 5.29786 5.30779 5.39150 5.46225 5.54510 5.57666 5.65778 5.72095 5.73886 5.79805 5.84121 5.91385 5.93100 6.10731 6.11601 6.27690 6.33087 6.40795 6.42388 6.58953 6.62465 6.72793 6.90894 6.97060 7.20843 7.38154 7.55567 7.95279 7.96437 8.63824 9.00660 9.68141 10.61253 11.38364 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.004214 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.712645 B = 6642.603453 C = 7850.827362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.715 5.715 16 C 0.509 3.491 17 O -0.551 6.551 18 C -0.139 4.139 19 C -0.069 4.069 20 H 0.080 0.920 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.169 4.169 24 C -0.089 4.089 25 C -0.117 4.117 26 H 0.254 0.746 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.402 0.598 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.514 -9.436 1.001 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.295 3.705 17 O -0.429 6.429 18 C -0.179 4.179 19 C -0.088 4.088 20 H 0.099 0.901 21 C -0.130 4.130 22 C -0.162 4.162 23 C -0.187 4.187 24 C -0.126 4.126 25 C -0.154 4.154 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.578 -9.432 0.224 17.365 hybrid contribution 0.422 1.142 0.565 1.342 sum 15.000 -8.290 0.789 17.156 Atomic orbital electron populations 1.69816 1.04992 1.25418 1.56329 1.24776 0.95636 0.97431 1.02528 0.86257 0.78554 0.83411 0.77890 1.21107 1.21535 1.21201 1.18801 0.89970 0.81373 1.44063 0.90256 1.45664 1.02596 0.98575 1.85895 1.22026 0.88715 0.90211 0.96462 1.23663 0.96994 0.99023 1.00369 1.22414 0.92105 0.87732 0.95806 0.93533 1.21765 0.83340 0.98063 0.97121 1.46019 1.06091 1.60983 1.23447 1.20601 0.84991 0.78913 0.85978 1.90625 1.87084 1.43952 1.21286 1.21768 0.92836 1.03258 1.00022 1.20932 0.92283 0.96183 0.99413 0.90138 1.20656 0.95834 0.95606 1.00858 1.22129 0.95217 0.99156 0.99717 1.21991 0.98495 0.96074 1.02110 1.20411 0.98491 0.94723 0.98931 1.21687 0.94362 1.01007 0.98368 0.93618 0.95769 0.91012 0.90226 0.92377 0.91246 0.92454 0.76342 0.88789 0.89209 0.91544 0.88894 0.88344 0.88448 0.91376 0.91024 0.91516 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 11.51 55.49 0.64 -26.21 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.21 -5.70 10.55 -15.06 -0.16 -5.86 16 8 H 0.08 2.00 7.50 -52.49 -0.39 1.61 16 9 N -0.60 -14.54 3.65 -176.97 -0.65 -15.19 16 10 C 0.15 3.45 7.39 -8.50 -0.06 3.39 16 11 C -0.16 -2.94 8.03 -26.21 -0.21 -3.15 16 12 C 0.13 2.43 4.10 -72.38 -0.30 2.13 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 15 N -0.72 -11.85 5.33 -60.30 -0.32 -12.17 16 16 C 0.51 8.20 7.58 -10.98 -0.08 8.12 16 17 O -0.55 -10.51 14.03 5.56 0.08 -10.43 16 18 C -0.14 -1.69 5.18 -27.88 -0.14 -1.84 16 19 C -0.07 -0.83 1.88 -90.40 -0.17 -1.00 16 20 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 21 C -0.09 -1.13 5.03 -28.17 -0.14 -1.27 16 22 C -0.14 -1.60 9.80 -35.90 -0.35 -1.95 16 23 C -0.17 -1.72 9.80 -35.90 -0.35 -2.07 16 24 C -0.09 -0.84 6.12 -28.17 -0.17 -1.01 16 25 C -0.12 -1.15 5.31 -26.51 -0.14 -1.29 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 29 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.40 6.33 8.37 -40.82 -0.34 5.99 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.09 1.35 6.22 -51.93 -0.32 1.02 16 38 H 0.10 0.99 8.06 -52.48 -0.42 0.56 16 39 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -30.92 344.53 -9.80 -40.72 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.31 Total: 5.26 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.40 Total: -3.91 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.33 Total: -53.58 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.92 -9.80 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.731 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds