Wall clock time and date at job start Tue Mar 31 2020 00:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99899 * 2 1 4 4 H 1.48496 * 109.47055 * 240.00181 * 3 2 1 5 5 H 1.48502 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47162 * 119.99731 * 3 2 1 7 7 C 1.38811 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99792 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.47064 * 136.05738 * 0.04378 * 9 7 2 11 11 C 1.53500 * 87.97988 * 152.84903 * 10 9 7 12 12 C 1.47064 * 136.05267 * 180.02562 * 9 7 2 13 13 H 1.09005 * 113.46484 * 92.31942 * 12 9 7 14 14 C 1.52997 * 113.46992 * 321.93335 * 12 9 7 15 15 N 1.46497 * 109.46983 * 74.50752 * 14 12 9 16 16 C 1.34780 * 119.99566 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.64070 * 55.41919 * 19 18 16 21 21 C 1.53027 * 109.64185 * 295.00119 * 19 18 16 22 22 C 1.50073 * 110.14441 * 190.87760 * 21 19 18 23 23 C 1.29438 * 124.07742 * 17.12942 * 22 21 19 24 24 C 1.50062 * 124.07589 * 359.50822 * 23 22 21 25 25 C 1.53034 * 110.14119 * 17.17030 * 24 23 22 26 26 H 0.96996 * 120.00172 * 0.02562 * 1 2 3 27 27 H 1.09000 * 113.47099 * 267.62886 * 10 9 7 28 28 H 1.08998 * 113.46636 * 38.07478 * 10 9 7 29 29 H 1.08994 * 114.20779 * 272.47666 * 11 10 9 30 30 H 1.09002 * 114.20287 * 139.65629 * 11 10 9 31 31 H 1.09001 * 109.46832 * 314.50568 * 14 12 9 32 32 H 1.09002 * 109.47153 * 194.50759 * 14 12 9 33 33 H 0.96995 * 120.00423 * 359.97438 * 15 14 12 34 34 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 35 35 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 36 36 H 1.09004 * 109.35604 * 311.08296 * 21 19 18 37 37 H 1.08996 * 109.36228 * 70.81105 * 21 19 18 38 38 H 1.08004 * 117.95862 * 197.15061 * 22 21 19 39 39 H 1.07998 * 117.96284 * 179.52895 * 23 22 21 40 40 H 1.09003 * 109.36073 * 137.35901 * 24 23 22 41 41 H 1.08997 * 109.36070 * 256.94516 * 24 23 22 42 42 H 1.09004 * 109.63716 * 190.86121 * 25 24 23 43 43 H 1.08997 * 109.66229 * 70.21909 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.0877 -2.7948 -0.0032 11 6 0.3425 -4.0914 -0.7032 12 6 1.6800 -3.8154 -0.0020 13 1 1.7445 -4.2468 0.9970 14 6 2.8998 -4.1401 -0.8665 15 7 4.1156 -3.6900 -0.1842 16 6 5.3194 -3.8721 -0.7624 17 8 5.3962 -4.4089 -1.8472 18 6 6.5701 -3.4096 -0.0603 19 6 7.7900 -3.7342 -0.9248 20 1 7.6666 -3.2919 -1.9134 21 6 7.9389 -5.2516 -1.0553 22 6 9.2655 -5.5898 -1.6701 23 6 10.2628 -4.7677 -1.7406 24 6 10.2284 -3.3581 -1.2271 25 6 9.0557 -3.1779 -0.2605 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4945 -2.9549 0.9953 28 1 -0.7219 -2.1583 -0.6203 29 1 0.3843 -4.0200 -1.7900 30 1 -0.1727 -4.9836 -0.3473 31 1 2.8114 -3.6300 -1.8257 32 1 2.9526 -5.2163 -1.0308 33 1 4.0542 -3.2604 0.6832 34 1 6.5173 -2.3335 0.1048 35 1 6.6586 -3.9204 0.8986 36 1 7.8717 -5.7075 -0.0675 37 1 7.1405 -5.6401 -1.6876 38 1 9.3960 -6.5807 -2.0794 39 1 11.1764 -5.1179 -2.1979 40 1 11.1614 -3.1400 -0.7074 41 1 10.1150 -2.6708 -2.0653 42 1 8.9198 -2.1185 -0.0429 43 1 9.2544 -3.7222 0.6627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483672567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:15 Heat of formation + Delta-G solvation = -3.446676 kcal Electronic energy + Delta-G solvation = -21777.943202 eV Core-core repulsion = 18630.582585 eV Total energy + Delta-G solvation = -3147.360617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04878 -39.93743 -38.92767 -35.42475 -34.23081 -33.70544 -31.58730 -30.06666 -29.68445 -27.56969 -25.38432 -24.19172 -23.55688 -22.24336 -21.31223 -20.79230 -18.90182 -18.66275 -17.70723 -17.18234 -17.08413 -16.63165 -16.25225 -15.83283 -15.50287 -15.11442 -14.92565 -14.70263 -14.23882 -13.81978 -13.72033 -13.48495 -13.26725 -13.18171 -12.94226 -12.90412 -12.67959 -12.59960 -12.41273 -12.33415 -11.83128 -11.64224 -11.61863 -11.48608 -11.15721 -10.99091 -10.83169 -10.52926 -9.94273 -9.79416 -8.88177 -7.85933 -5.17830 1.44997 1.45220 1.48220 1.53521 1.75453 2.33726 2.49817 3.36338 3.45239 3.72067 3.78913 3.87324 3.95983 4.11619 4.21071 4.29076 4.36049 4.44858 4.50686 4.58384 4.65338 4.70263 4.75229 4.79633 4.83504 4.88999 4.98160 5.05246 5.05970 5.10497 5.12955 5.25761 5.33875 5.40554 5.51311 5.54817 5.61517 5.75320 5.82128 5.98137 6.11659 6.67030 6.94776 7.36073 7.65810 8.65592 9.31731 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.004214 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.712645 B = 6642.603453 C = 7850.827362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.208 4.208 8 H 0.089 0.911 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.131 3.869 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.584 6.584 18 C -0.131 4.131 19 C -0.068 4.068 20 H 0.053 0.947 21 C -0.089 4.089 22 C -0.165 4.165 23 C -0.164 4.164 24 C -0.093 4.093 25 C -0.112 4.112 26 H 0.245 0.755 27 H 0.023 0.977 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.408 0.592 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.726 -10.234 2.157 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.197 1.197 7 C -0.337 4.337 8 H 0.107 0.893 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.006 3.994 15 N -0.366 5.366 16 C 0.293 3.707 17 O -0.465 6.465 18 C -0.171 4.171 19 C -0.087 4.087 20 H 0.071 0.929 21 C -0.126 4.126 22 C -0.183 4.183 23 C -0.182 4.182 24 C -0.130 4.130 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.243 0.757 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.821 -10.263 1.398 19.754 hybrid contribution -0.250 1.300 0.170 1.334 sum 16.571 -8.963 1.568 18.905 Atomic orbital electron populations 1.70010 1.06410 1.25284 1.58838 1.25559 0.96420 1.00638 1.03863 0.85281 0.77207 0.79483 0.78199 1.21001 1.22587 1.19689 1.19207 0.90658 0.82436 1.41348 0.89305 1.45988 1.03571 1.00070 1.85897 1.22037 0.87870 0.92076 0.96309 1.23488 0.96049 0.98104 0.99862 1.22548 0.92977 0.84730 0.96944 0.91304 1.21518 0.83755 0.98688 0.95427 1.46029 1.05897 1.61087 1.23594 1.21319 0.85801 0.77998 0.85615 1.90620 1.87564 1.45395 1.22908 1.21813 0.90547 1.04057 1.00678 1.20896 0.93470 0.96046 0.98300 0.92873 1.20558 0.95517 0.95681 1.00844 1.22182 0.95121 0.99979 1.01003 1.22240 0.98676 0.96235 1.01009 1.20495 0.99293 0.94129 0.99046 1.21671 0.93057 1.01598 0.98601 0.94631 0.95938 0.94728 0.90481 0.88265 0.94501 0.90643 0.75695 0.87674 0.86409 0.90565 0.91870 0.87835 0.86989 0.89364 0.91203 0.90528 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.42 11.51 21.65 0.25 -57.17 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.21 -11.01 10.55 84.03 0.89 -10.13 16 8 H 0.09 4.39 7.50 -2.91 -0.02 4.37 16 9 N -0.63 -30.20 3.65 -713.82 -2.61 -32.80 16 10 C 0.14 6.53 7.39 83.19 0.61 7.14 16 11 C -0.14 -4.70 8.03 30.94 0.25 -4.46 16 12 C 0.13 4.87 4.10 41.80 0.17 5.05 16 13 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 14 C 0.13 4.56 5.52 86.38 0.48 5.04 16 15 N -0.72 -22.61 5.33 -463.06 -2.47 -25.08 16 16 C 0.50 15.70 7.58 87.66 0.66 16.37 16 17 O -0.58 -22.32 14.03 -3.03 -0.04 -22.36 16 18 C -0.13 -2.92 5.18 29.85 0.15 -2.77 16 19 C -0.07 -1.54 1.88 -10.65 -0.02 -1.56 16 20 H 0.05 1.49 7.96 -2.38 -0.02 1.47 16 21 C -0.09 -2.08 5.03 29.66 0.15 -1.94 16 22 C -0.16 -3.46 9.80 27.04 0.27 -3.20 16 23 C -0.16 -3.01 9.80 27.04 0.27 -2.74 16 24 C -0.09 -1.52 6.12 29.66 0.18 -1.33 16 25 C -0.11 -1.90 5.31 30.74 0.16 -1.73 16 26 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.03 1.82 7.12 -2.39 -0.02 1.80 16 29 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 30 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.41 11.97 8.37 -92.71 -0.78 11.19 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.12 1.99 8.11 -2.39 -0.02 1.97 16 36 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.06 1.86 6.22 -2.39 -0.01 1.84 16 38 H 0.10 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 Total: -1.00 -68.43 344.53 2.05 -66.38 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.20 Total: 23.72 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 4.69 Total: 0.17 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -4.83 Total: -115.05 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.43 2.05 -66.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.938 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds