Wall clock time and date at job start Tue Mar 31 2020 00:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99891 * 2 1 4 4 H 1.48508 * 109.47030 * 240.00126 * 3 2 1 5 5 H 1.48501 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47110 * 120.00331 * 3 2 1 7 7 C 1.38809 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99769 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00316 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49340 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11678 * 204.63685 * 10 9 7 12 12 C 1.47588 * 134.49324 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.87199 * 269.67140 * 12 9 7 14 14 C 1.52997 * 113.76670 * 41.06048 * 12 9 7 15 15 N 1.46502 * 109.47094 * 281.48943 * 14 12 9 16 16 C 1.34771 * 120.00013 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00161 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00025 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46952 * 180.02562 * 18 16 15 20 20 H 1.09004 * 109.81566 * 304.46587 * 19 18 16 21 21 C 1.53026 * 109.64535 * 65.00045 * 19 18 16 22 22 C 1.50064 * 110.14920 * 169.12187 * 21 19 18 23 23 C 1.29450 * 124.07289 * 342.86410 * 22 21 19 24 24 C 1.50059 * 124.07486 * 0.49555 * 23 22 21 25 25 C 1.53035 * 110.14358 * 342.83031 * 24 23 22 26 26 H 0.96994 * 119.99713 * 359.97438 * 1 2 3 27 27 H 1.08993 * 113.76974 * 90.33281 * 10 9 7 28 28 H 1.09006 * 113.76364 * 318.93430 * 10 9 7 29 29 H 1.08997 * 113.74551 * 222.04273 * 11 10 9 30 30 H 1.09008 * 113.74249 * 90.73201 * 11 10 9 31 31 H 1.09000 * 109.46830 * 161.49631 * 14 12 9 32 32 H 1.08998 * 109.47198 * 41.49355 * 14 12 9 33 33 H 0.96997 * 119.99739 * 0.02562 * 15 14 12 34 34 H 1.09000 * 109.47068 * 60.00403 * 18 16 15 35 35 H 1.08998 * 109.47074 * 300.00058 * 18 16 15 36 36 H 1.08998 * 109.35522 * 289.32439 * 21 19 18 37 37 H 1.08993 * 109.35716 * 48.90823 * 21 19 18 38 38 H 1.07997 * 117.96571 * 162.84457 * 22 21 19 39 39 H 1.07996 * 117.95844 * 180.47168 * 23 22 21 40 40 H 1.09003 * 109.36098 * 103.05424 * 24 23 22 41 41 H 1.09001 * 109.35612 * 222.77184 * 24 23 22 42 42 H 1.08997 * 109.65476 * 289.77815 * 25 24 23 43 43 H 1.09003 * 109.63808 * 169.13913 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1033 -2.7574 0.0019 11 6 0.3471 -4.0824 0.6434 12 6 1.7202 -3.8102 0.0019 13 1 1.8319 -4.2372 -0.9947 14 6 2.9031 -4.1216 0.9209 15 7 4.1499 -3.7188 0.2655 16 6 5.3293 -3.8985 0.8925 17 8 5.3586 -4.3941 1.9990 18 6 6.6118 -3.4836 0.2185 19 6 7.7947 -3.7952 1.1375 20 1 7.6486 -3.3133 2.1043 21 6 7.9122 -5.3088 1.3297 22 6 9.2102 -5.6451 2.0034 23 6 10.2189 -4.8374 2.0786 24 6 10.2275 -3.4479 1.5119 25 6 9.0925 -3.2852 0.4983 26 1 -0.4849 0.8400 0.0004 27 1 -0.5272 -2.8739 -0.9954 28 1 -0.7168 -2.1385 0.6567 29 1 -0.1591 -4.9595 0.2403 30 1 0.3593 -4.0606 1.7332 31 1 2.9306 -5.1915 1.1277 32 1 2.7907 -3.5735 1.8563 33 1 4.1265 -3.3221 -0.6193 34 1 6.5839 -2.4137 0.0117 35 1 6.7246 -4.0317 -0.7168 36 1 7.0840 -5.6601 1.9452 37 1 7.8714 -5.8006 0.3579 38 1 9.3088 -6.6217 2.4538 39 1 11.1096 -5.1850 2.5808 40 1 10.0971 -2.7275 2.3194 41 1 11.1809 -3.2659 1.0159 42 1 9.3137 -3.8673 -0.3963 43 1 8.9831 -2.2327 0.2366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483672568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:21 Heat of formation + Delta-G solvation = 11.552962 kcal Electronic energy + Delta-G solvation = -21746.666470 eV Core-core repulsion = 18599.956286 eV Total energy + Delta-G solvation = -3146.710184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.81586 -38.38827 -37.66570 -34.00962 -32.78170 -32.17613 -30.79171 -28.60261 -27.87653 -26.41951 -23.37094 -23.30402 -22.27081 -21.18590 -19.98266 -19.04942 -18.01329 -17.02116 -16.28770 -16.14813 -15.49922 -15.36107 -14.79542 -14.43556 -14.14960 -13.85373 -13.51442 -13.39606 -13.07784 -12.71409 -12.59996 -12.33787 -12.12301 -11.89705 -11.50279 -11.39492 -11.10199 -11.01299 -10.74650 -10.71978 -10.58779 -10.56638 -10.19024 -9.99406 -9.77139 -9.58822 -9.23787 -8.98390 -8.80341 -8.52711 -6.90175 -5.77119 -3.09617 2.25516 3.01053 3.37078 3.41778 3.43169 3.60184 4.42322 4.60138 4.65898 4.79402 5.05974 5.13585 5.14891 5.28782 5.30090 5.40028 5.45499 5.55387 5.61942 5.65148 5.71210 5.72933 5.79078 5.83256 5.92241 5.92446 6.09955 6.10915 6.27159 6.33232 6.40915 6.41695 6.62006 6.62136 6.73106 6.90400 6.96366 7.23937 7.40874 7.58343 7.94623 7.97897 8.62645 9.03499 9.70404 10.59010 11.39631 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.004157 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.059069 B = 6733.946755 C = 7917.887802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.124 3.876 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.550 6.550 18 C -0.139 4.139 19 C -0.069 4.069 20 H 0.080 0.920 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.169 4.169 24 C -0.089 4.089 25 C -0.117 4.117 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.644 -9.761 -0.592 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.366 5.366 16 C 0.295 3.705 17 O -0.429 6.429 18 C -0.179 4.179 19 C -0.088 4.088 20 H 0.099 0.901 21 C -0.130 4.130 22 C -0.162 4.162 23 C -0.187 4.187 24 C -0.126 4.126 25 C -0.155 4.155 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.236 0.764 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.661 -9.751 0.205 17.608 hybrid contribution 0.467 1.156 -0.577 1.374 sum 15.128 -8.595 -0.371 17.403 Atomic orbital electron populations 1.69809 1.04973 1.25366 1.56586 1.24758 0.95618 0.97405 1.02595 0.86275 0.78565 0.83509 0.77860 1.21249 1.21560 1.21155 1.18894 0.90111 0.81946 1.43764 0.90439 1.46069 1.02279 0.98565 1.85958 1.22200 0.87956 0.89645 0.96857 1.23779 0.96227 0.98941 1.00560 1.22507 0.92420 0.87630 0.95617 0.93402 1.21720 0.82548 0.98560 0.97289 1.46018 1.06196 1.63058 1.21329 1.20599 0.85302 0.78452 0.86121 1.90627 1.87436 1.44808 1.19996 1.21765 0.92670 1.03449 0.99972 1.20932 0.92399 0.96415 0.99071 0.90135 1.20650 0.96264 0.95523 1.00525 1.22125 0.95213 0.99214 0.99656 1.21993 0.98468 0.96279 1.01928 1.20414 0.98688 0.94965 0.98494 1.21694 0.94399 1.01159 0.98199 0.93644 0.95611 0.90841 0.92846 0.90524 0.92351 0.91107 0.76420 0.88795 0.89198 0.88889 0.91556 0.88338 0.88441 0.91006 0.91373 0.91769 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 11.38 55.49 0.63 -26.29 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -5.86 10.51 -15.06 -0.16 -6.01 16 8 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 9 N -0.60 -14.59 3.57 -170.72 -0.61 -15.20 16 10 C 0.16 3.63 7.51 -2.97 -0.02 3.61 16 11 C -0.16 -2.85 7.86 -25.79 -0.20 -3.05 16 12 C 0.13 2.40 4.33 -66.84 -0.29 2.11 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.22 5.54 -4.04 -0.02 2.20 16 15 N -0.72 -11.73 5.53 -60.30 -0.33 -12.07 16 16 C 0.51 8.14 7.58 -10.99 -0.08 8.05 16 17 O -0.55 -10.45 14.04 5.56 0.08 -10.38 16 18 C -0.14 -1.67 5.18 -27.88 -0.14 -1.81 16 19 C -0.07 -0.83 1.88 -90.40 -0.17 -1.00 16 20 H 0.08 1.13 7.96 -51.93 -0.41 0.71 16 21 C -0.09 -1.12 5.03 -28.18 -0.14 -1.26 16 22 C -0.14 -1.59 9.80 -35.90 -0.35 -1.94 16 23 C -0.17 -1.71 9.80 -35.91 -0.35 -2.06 16 24 C -0.09 -0.83 6.11 -28.17 -0.17 -1.00 16 25 C -0.12 -1.14 5.31 -26.51 -0.14 -1.28 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.88 7.15 -51.93 -0.37 1.50 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.39 8.10 -51.92 -0.42 0.97 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.40 6.18 8.47 -40.82 -0.35 5.84 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 36 H 0.09 1.34 6.22 -51.93 -0.32 1.02 16 37 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -31.05 345.09 -9.74 -40.79 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.33 Total: 4.85 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.35 Total: -3.75 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.31 Total: -53.56 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.05 -9.74 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.341 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds