Wall clock time and date at job start Tue Mar 31 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99891 * 2 1 4 4 H 1.48508 * 109.47030 * 240.00126 * 3 2 1 5 5 H 1.48501 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47110 * 120.00331 * 3 2 1 7 7 C 1.38809 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99769 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00316 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49340 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11678 * 204.63685 * 10 9 7 12 12 C 1.47588 * 134.49324 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.87199 * 269.67140 * 12 9 7 14 14 C 1.52997 * 113.76670 * 41.06048 * 12 9 7 15 15 N 1.46502 * 109.47094 * 281.48943 * 14 12 9 16 16 C 1.34771 * 120.00013 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00161 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00025 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46952 * 180.02562 * 18 16 15 20 20 H 1.09004 * 109.81566 * 304.46587 * 19 18 16 21 21 C 1.53026 * 109.64535 * 65.00045 * 19 18 16 22 22 C 1.50064 * 110.14920 * 169.12187 * 21 19 18 23 23 C 1.29450 * 124.07289 * 342.86410 * 22 21 19 24 24 C 1.50059 * 124.07486 * 0.49555 * 23 22 21 25 25 C 1.53035 * 110.14358 * 342.83031 * 24 23 22 26 26 H 0.96994 * 119.99713 * 359.97438 * 1 2 3 27 27 H 1.08993 * 113.76974 * 90.33281 * 10 9 7 28 28 H 1.09006 * 113.76364 * 318.93430 * 10 9 7 29 29 H 1.08997 * 113.74551 * 222.04273 * 11 10 9 30 30 H 1.09008 * 113.74249 * 90.73201 * 11 10 9 31 31 H 1.09000 * 109.46830 * 161.49631 * 14 12 9 32 32 H 1.08998 * 109.47198 * 41.49355 * 14 12 9 33 33 H 0.96997 * 119.99739 * 0.02562 * 15 14 12 34 34 H 1.09000 * 109.47068 * 60.00403 * 18 16 15 35 35 H 1.08998 * 109.47074 * 300.00058 * 18 16 15 36 36 H 1.08998 * 109.35522 * 289.32439 * 21 19 18 37 37 H 1.08993 * 109.35716 * 48.90823 * 21 19 18 38 38 H 1.07997 * 117.96571 * 162.84457 * 22 21 19 39 39 H 1.07996 * 117.95844 * 180.47168 * 23 22 21 40 40 H 1.09003 * 109.36098 * 103.05424 * 24 23 22 41 41 H 1.09001 * 109.35612 * 222.77184 * 24 23 22 42 42 H 1.08997 * 109.65476 * 289.77815 * 25 24 23 43 43 H 1.09003 * 109.63808 * 169.13913 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1033 -2.7574 0.0019 11 6 0.3471 -4.0824 0.6434 12 6 1.7202 -3.8102 0.0019 13 1 1.8319 -4.2372 -0.9947 14 6 2.9031 -4.1216 0.9209 15 7 4.1499 -3.7188 0.2655 16 6 5.3293 -3.8985 0.8925 17 8 5.3586 -4.3941 1.9990 18 6 6.6118 -3.4836 0.2185 19 6 7.7947 -3.7952 1.1375 20 1 7.6486 -3.3133 2.1043 21 6 7.9122 -5.3088 1.3297 22 6 9.2102 -5.6451 2.0034 23 6 10.2189 -4.8374 2.0786 24 6 10.2275 -3.4479 1.5119 25 6 9.0925 -3.2852 0.4983 26 1 -0.4849 0.8400 0.0004 27 1 -0.5272 -2.8739 -0.9954 28 1 -0.7168 -2.1385 0.6567 29 1 -0.1591 -4.9595 0.2403 30 1 0.3593 -4.0606 1.7332 31 1 2.9306 -5.1915 1.1277 32 1 2.7907 -3.5735 1.8563 33 1 4.1265 -3.3221 -0.6193 34 1 6.5839 -2.4137 0.0117 35 1 6.7246 -4.0317 -0.7168 36 1 7.0840 -5.6601 1.9452 37 1 7.8714 -5.8006 0.3579 38 1 9.3088 -6.6217 2.4538 39 1 11.1096 -5.1850 2.5808 40 1 10.0971 -2.7275 2.3194 41 1 11.1809 -3.2659 1.0159 42 1 9.3137 -3.8673 -0.3963 43 1 8.9831 -2.2327 0.2366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483672568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:19 Heat of formation + Delta-G solvation = -7.025219 kcal Electronic energy + Delta-G solvation = -21747.472080 eV Core-core repulsion = 18599.956286 eV Total energy + Delta-G solvation = -3147.515794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.02697 -39.77776 -38.90568 -35.43789 -34.19037 -33.70216 -31.58726 -30.03939 -29.67426 -27.60322 -25.27880 -24.22684 -23.65886 -22.25434 -21.29274 -20.69462 -18.90288 -18.65928 -17.69825 -17.19054 -17.07515 -16.63407 -16.25918 -15.82158 -15.51836 -15.11584 -14.94837 -14.71393 -14.24325 -13.80990 -13.72111 -13.44745 -13.22637 -13.18238 -12.92065 -12.90002 -12.67958 -12.59347 -12.41499 -12.30975 -11.82669 -11.62425 -11.52433 -11.48364 -11.32233 -10.99507 -10.81221 -10.55617 -9.95238 -9.79450 -8.86972 -7.85002 -5.16728 1.44831 1.44919 1.47778 1.53054 1.75456 2.33036 2.50180 3.34652 3.40657 3.72180 3.79225 3.87918 4.00545 4.11658 4.20171 4.29183 4.37016 4.44731 4.50752 4.58440 4.64989 4.71975 4.75731 4.79738 4.83651 4.88626 4.98114 5.05896 5.06129 5.10772 5.13562 5.25815 5.35055 5.40590 5.51287 5.55152 5.63540 5.76469 5.82143 5.99785 6.11638 6.66948 6.97029 7.36177 7.67487 8.62307 9.31892 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.004157 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.059069 B = 6733.946755 C = 7917.887802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.214 4.214 8 H 0.087 0.913 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.133 3.867 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.584 6.584 18 C -0.131 4.131 19 C -0.068 4.068 20 H 0.052 0.948 21 C -0.089 4.089 22 C -0.165 4.165 23 C -0.164 4.164 24 C -0.093 4.093 25 C -0.112 4.112 26 H 0.245 0.755 27 H 0.022 0.978 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.408 0.592 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.898 -10.615 -1.763 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.211 1.211 7 C -0.342 4.342 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.171 4.171 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.008 3.992 15 N -0.366 5.366 16 C 0.293 3.707 17 O -0.465 6.465 18 C -0.170 4.170 19 C -0.087 4.087 20 H 0.071 0.929 21 C -0.126 4.126 22 C -0.183 4.183 23 C -0.182 4.182 24 C -0.130 4.130 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.243 0.757 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.946 -10.636 -0.985 20.032 hybrid contribution -0.213 1.334 -0.175 1.362 sum 16.733 -9.302 -1.160 19.180 Atomic orbital electron populations 1.70002 1.06349 1.25226 1.59020 1.25531 0.96410 1.00581 1.03946 0.85307 0.77228 0.79644 0.78132 1.19790 1.22568 1.21082 1.19295 0.90766 0.83055 1.41112 0.89565 1.46418 1.03208 1.00014 1.85950 1.22164 0.87202 0.91792 0.96412 1.23577 0.95366 0.97825 1.00329 1.22668 0.93243 0.84562 0.96788 0.91074 1.21462 0.83085 0.99068 0.95572 1.46021 1.05895 1.63158 1.21554 1.21324 0.86221 0.77465 0.85719 1.90623 1.87947 1.46269 1.21651 1.21809 0.90197 1.04411 1.00624 1.20897 0.93681 0.96160 0.98001 0.92902 1.20553 0.95804 0.95678 1.00578 1.22180 0.95188 1.00054 1.00857 1.22242 0.98581 0.96390 1.00955 1.20499 0.99561 0.94352 0.98563 1.21677 0.92984 1.01835 0.98446 0.94646 0.95968 0.94444 0.88817 0.90603 0.90531 0.94512 0.75659 0.87634 0.86338 0.91879 0.90546 0.87848 0.87004 0.91203 0.89366 0.90592 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.49 11.38 21.65 0.25 -57.24 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.21 -11.36 10.51 84.03 0.88 -10.47 16 8 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 9 N -0.63 -30.25 3.57 -694.03 -2.48 -32.73 16 10 C 0.15 6.88 7.51 86.48 0.65 7.53 16 11 C -0.13 -4.58 7.86 31.27 0.25 -4.34 16 12 C 0.13 4.83 4.33 45.10 0.20 5.02 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.13 4.62 5.54 86.38 0.48 5.10 16 15 N -0.72 -22.31 5.53 -463.07 -2.56 -24.87 16 16 C 0.50 15.56 7.58 87.66 0.66 16.23 16 17 O -0.58 -22.25 14.04 -3.03 -0.04 -22.30 16 18 C -0.13 -2.86 5.18 29.85 0.15 -2.71 16 19 C -0.07 -1.53 1.88 -10.65 -0.02 -1.55 16 20 H 0.05 1.47 7.96 -2.38 -0.02 1.45 16 21 C -0.09 -2.07 5.03 29.66 0.15 -1.92 16 22 C -0.16 -3.45 9.80 27.03 0.26 -3.18 16 23 C -0.16 -3.00 9.80 27.03 0.26 -2.73 16 24 C -0.09 -1.51 6.11 29.66 0.18 -1.33 16 25 C -0.11 -1.88 5.31 30.74 0.16 -1.71 16 26 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.97 7.15 -2.38 -0.02 1.96 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.08 2.65 8.10 -2.38 -0.02 2.63 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.41 11.65 8.47 -92.71 -0.79 10.86 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.12 1.94 8.11 -2.39 -0.02 1.92 16 36 H 0.06 1.85 6.22 -2.39 -0.01 1.83 16 37 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -68.74 345.09 2.13 -66.61 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.19 Total: 22.81 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 4.74 Total: 0.33 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.79 Total: -114.85 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.04 Total: -22.30 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.74 2.13 -66.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.589 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds