Wall clock time and date at job start Tue Mar 31 2020 00:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46961 * 299.99827 * 3 2 1 6 6 H 1.48497 * 109.47218 * 59.99899 * 3 2 1 7 7 C 1.38810 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99996 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.47070 * 136.05550 * 0.04574 * 9 7 2 11 11 C 1.53492 * 87.98327 * 152.84847 * 10 9 7 12 12 C 1.47059 * 136.06047 * 180.02562 * 9 7 2 13 13 H 1.09002 * 113.47310 * 92.30985 * 12 9 7 14 14 C 1.53006 * 113.46825 * 321.92979 * 12 9 7 15 15 N 1.46508 * 109.46734 * 74.50643 * 14 12 9 16 16 C 1.34780 * 119.99755 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99857 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00134 * 179.97438 * 16 15 14 19 19 C 1.52996 * 109.47077 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.64512 * 304.57909 * 19 18 16 21 21 C 1.53020 * 109.64282 * 65.00510 * 19 18 16 22 22 C 1.50060 * 110.15249 * 169.11536 * 21 19 18 23 23 C 1.29452 * 124.07388 * 342.87128 * 22 21 19 24 24 C 1.50070 * 124.07339 * 0.72572 * 23 22 21 25 25 C 1.53175 * 110.06164 * 342.43433 * 24 23 22 26 26 H 0.97002 * 120.00104 * 0.02562 * 1 2 3 27 27 H 1.09001 * 113.46292 * 267.63118 * 10 9 7 28 28 H 1.08994 * 113.46568 * 38.06872 * 10 9 7 29 29 H 1.08997 * 114.20709 * 272.48250 * 11 10 9 30 30 H 1.08999 * 114.20792 * 139.65613 * 11 10 9 31 31 H 1.08996 * 109.46893 * 314.51191 * 14 12 9 32 32 H 1.09000 * 109.47530 * 194.50183 * 14 12 9 33 33 H 0.96998 * 120.00034 * 359.97438 * 15 14 12 34 34 H 1.09009 * 109.46393 * 60.00069 * 18 16 15 35 35 H 1.08998 * 109.47287 * 300.00301 * 18 16 15 36 36 H 1.09006 * 109.35695 * 48.90903 * 21 19 18 37 37 H 1.09005 * 109.24475 * 289.25888 * 21 19 18 38 38 H 1.07994 * 117.96623 * 162.88814 * 22 21 19 39 39 H 1.08002 * 117.95997 * 180.43936 * 23 22 21 40 40 H 1.09008 * 109.35692 * 102.81449 * 24 23 22 41 41 H 1.08999 * 109.35595 * 222.40096 * 24 23 22 42 42 H 1.09002 * 109.83997 * 290.06104 * 25 24 23 43 43 H 1.09003 * 109.58505 * 169.34422 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7949 -0.0007 11 6 0.3424 -4.0920 -0.6995 12 6 1.6798 -3.8153 0.0015 13 1 1.7446 -4.2460 1.0007 14 6 2.8997 -4.1409 -0.8629 15 7 4.1156 -3.6902 -0.1810 16 6 5.3194 -3.8728 -0.7590 17 8 5.3960 -4.4106 -1.8434 18 6 6.5700 -3.4088 -0.0580 19 6 7.7898 -3.7344 -0.9222 20 1 7.8005 -4.7993 -1.1546 21 6 7.7317 -2.9253 -2.2197 22 6 9.0372 -3.0287 -2.9523 23 6 10.1433 -3.4273 -2.4106 24 6 10.2711 -3.8566 -0.9783 25 6 9.0712 -3.3536 -0.1699 26 1 -0.4850 0.8401 -0.0004 27 1 -0.4945 -2.9540 0.9980 28 1 -0.7219 -2.1589 -0.6183 29 1 0.3842 -4.0215 -1.7864 30 1 -0.1728 -4.9839 -0.3428 31 1 2.8113 -3.6316 -1.8225 32 1 2.9525 -5.2173 -1.0262 33 1 4.0541 -3.2598 0.6861 34 1 6.6587 -3.9181 0.9018 35 1 6.5169 -2.3324 0.1054 36 1 7.5310 -1.8799 -1.9849 37 1 6.9318 -3.3140 -2.8500 38 1 9.0552 -2.7532 -3.9964 39 1 11.0281 -3.4570 -3.0291 40 1 10.3131 -4.9448 -0.9296 41 1 11.1873 -3.4425 -0.5574 42 1 9.1251 -2.2701 -0.0632 43 1 9.0713 -3.8222 0.8142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483672569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:25 Heat of formation + Delta-G solvation = 14.849358 kcal Electronic energy + Delta-G solvation = -21845.249277 eV Core-core repulsion = 18698.682035 eV Total energy + Delta-G solvation = -3146.567242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -39.80979 -38.48402 -37.74508 -33.99503 -32.76148 -32.22593 -30.75240 -28.58024 -27.94547 -26.36795 -23.49295 -23.27072 -22.14945 -21.13930 -19.96439 -19.17377 -17.98406 -17.01707 -16.31519 -16.11175 -15.48685 -15.35495 -14.80144 -14.34444 -14.18840 -13.89117 -13.52557 -13.28200 -13.02658 -12.80129 -12.53223 -12.32448 -12.02967 -11.92744 -11.60464 -11.43272 -11.13347 -10.99304 -10.80185 -10.70910 -10.57743 -10.54988 -10.16059 -9.98617 -9.84357 -9.51001 -9.15262 -8.95164 -8.84092 -8.50389 -6.92176 -5.79505 -3.12051 2.29841 3.01875 3.35551 3.40232 3.43514 3.61744 4.40654 4.62242 4.67868 4.81886 5.08358 5.14777 5.19414 5.30760 5.33123 5.38768 5.50118 5.55042 5.58292 5.66540 5.73048 5.77280 5.79642 5.82134 5.91095 5.95655 6.11683 6.14641 6.30321 6.34129 6.40830 6.43506 6.58683 6.65611 6.72573 6.92413 6.99779 7.20866 7.37878 7.55637 7.94850 7.96270 8.63703 9.00252 9.67710 10.60740 11.37819 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.004403 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.109973 B = 6357.459979 C = 7412.511923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.715 5.715 16 C 0.509 3.491 17 O -0.551 6.551 18 C -0.139 4.139 19 C -0.068 4.068 20 H 0.079 0.921 21 C -0.096 4.096 22 C -0.140 4.140 23 C -0.173 4.173 24 C -0.087 4.087 25 C -0.117 4.117 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.402 0.598 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 -8.469 0.489 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.295 3.705 17 O -0.430 6.430 18 C -0.179 4.179 19 C -0.086 4.086 20 H 0.097 0.903 21 C -0.133 4.133 22 C -0.158 4.158 23 C -0.191 4.191 24 C -0.124 4.124 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.517 -8.469 -0.291 16.809 hybrid contribution 0.383 1.270 0.510 1.421 sum 14.900 -7.199 0.218 16.549 Atomic orbital electron populations 1.69834 1.04986 1.25165 1.56503 1.24774 0.95637 0.97429 1.02584 0.86109 0.78706 0.84008 0.77302 1.20516 1.21717 1.21770 1.18895 0.90029 0.81340 1.43781 0.90138 1.45683 1.02607 0.98598 1.85866 1.22027 0.88723 0.90210 0.96480 1.23660 0.96990 0.99024 1.00370 1.22415 0.92108 0.87722 0.95815 0.93528 1.21769 0.83335 0.98065 0.97123 1.46023 1.06088 1.60923 1.23507 1.20602 0.84997 0.78900 0.85978 1.90625 1.87123 1.43976 1.21239 1.21775 0.92883 1.03344 0.99930 1.20921 0.92249 1.01028 0.94450 0.90289 1.20681 0.96173 0.99983 0.96445 1.22145 0.94768 0.99431 0.99474 1.21977 0.97744 1.02493 0.96853 1.20423 0.98270 1.00676 0.93018 1.21721 0.94148 1.01307 0.98275 0.93729 0.95761 0.91003 0.90224 0.92371 0.91237 0.92453 0.76345 0.89135 0.88868 0.91254 0.88785 0.88293 0.88463 0.91142 0.91445 0.91616 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 11.51 55.49 0.64 -26.15 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.21 -5.64 10.55 -15.06 -0.16 -5.80 16 8 H 0.08 2.04 7.50 -52.48 -0.39 1.64 16 9 N -0.60 -14.51 3.65 -177.02 -0.65 -15.15 16 10 C 0.15 3.44 7.39 -8.52 -0.06 3.38 16 11 C -0.16 -2.93 8.03 -26.21 -0.21 -3.14 16 12 C 0.13 2.42 4.10 -72.40 -0.30 2.13 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.19 5.52 -4.03 -0.02 2.17 16 15 N -0.72 -11.85 5.33 -60.29 -0.32 -12.18 16 16 C 0.51 8.21 7.58 -10.99 -0.08 8.12 16 17 O -0.55 -10.50 14.03 5.55 0.08 -10.42 16 18 C -0.14 -1.70 5.18 -27.89 -0.14 -1.85 16 19 C -0.07 -0.81 1.88 -90.40 -0.17 -0.98 16 20 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 21 C -0.10 -1.28 5.04 -28.18 -0.14 -1.42 16 22 C -0.14 -1.67 9.80 -35.91 -0.35 -2.02 16 23 C -0.17 -1.83 9.80 -35.90 -0.35 -2.18 16 24 C -0.09 -0.81 6.12 -28.10 -0.17 -0.98 16 25 C -0.12 -1.15 5.32 -26.43 -0.14 -1.29 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 29 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.40 6.34 8.37 -40.82 -0.34 5.99 16 34 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 36 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.09 1.49 6.21 -51.93 -0.32 1.17 16 38 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.10 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -30.85 344.53 -9.80 -40.65 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.31 Total: 5.49 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.40 Total: -4.17 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.33 Total: -53.48 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -9.80 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.498 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds