Wall clock time and date at job start Tue Mar 31 2020 00:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46961 * 299.99827 * 3 2 1 6 6 H 1.48497 * 109.47218 * 59.99899 * 3 2 1 7 7 C 1.38810 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99996 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.47070 * 136.05550 * 0.04574 * 9 7 2 11 11 C 1.53492 * 87.98327 * 152.84847 * 10 9 7 12 12 C 1.47059 * 136.06047 * 180.02562 * 9 7 2 13 13 H 1.09002 * 113.47310 * 92.30985 * 12 9 7 14 14 C 1.53006 * 113.46825 * 321.92979 * 12 9 7 15 15 N 1.46508 * 109.46734 * 74.50643 * 14 12 9 16 16 C 1.34780 * 119.99755 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99857 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00134 * 179.97438 * 16 15 14 19 19 C 1.52996 * 109.47077 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.64512 * 304.57909 * 19 18 16 21 21 C 1.53020 * 109.64282 * 65.00510 * 19 18 16 22 22 C 1.50060 * 110.15249 * 169.11536 * 21 19 18 23 23 C 1.29452 * 124.07388 * 342.87128 * 22 21 19 24 24 C 1.50070 * 124.07339 * 0.72572 * 23 22 21 25 25 C 1.53175 * 110.06164 * 342.43433 * 24 23 22 26 26 H 0.97002 * 120.00104 * 0.02562 * 1 2 3 27 27 H 1.09001 * 113.46292 * 267.63118 * 10 9 7 28 28 H 1.08994 * 113.46568 * 38.06872 * 10 9 7 29 29 H 1.08997 * 114.20709 * 272.48250 * 11 10 9 30 30 H 1.08999 * 114.20792 * 139.65613 * 11 10 9 31 31 H 1.08996 * 109.46893 * 314.51191 * 14 12 9 32 32 H 1.09000 * 109.47530 * 194.50183 * 14 12 9 33 33 H 0.96998 * 120.00034 * 359.97438 * 15 14 12 34 34 H 1.09009 * 109.46393 * 60.00069 * 18 16 15 35 35 H 1.08998 * 109.47287 * 300.00301 * 18 16 15 36 36 H 1.09006 * 109.35695 * 48.90903 * 21 19 18 37 37 H 1.09005 * 109.24475 * 289.25888 * 21 19 18 38 38 H 1.07994 * 117.96623 * 162.88814 * 22 21 19 39 39 H 1.08002 * 117.95997 * 180.43936 * 23 22 21 40 40 H 1.09008 * 109.35692 * 102.81449 * 24 23 22 41 41 H 1.08999 * 109.35595 * 222.40096 * 24 23 22 42 42 H 1.09002 * 109.83997 * 290.06104 * 25 24 23 43 43 H 1.09003 * 109.58505 * 169.34422 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7949 -0.0007 11 6 0.3424 -4.0920 -0.6995 12 6 1.6798 -3.8153 0.0015 13 1 1.7446 -4.2460 1.0007 14 6 2.8997 -4.1409 -0.8629 15 7 4.1156 -3.6902 -0.1810 16 6 5.3194 -3.8728 -0.7590 17 8 5.3960 -4.4106 -1.8434 18 6 6.5700 -3.4088 -0.0580 19 6 7.7898 -3.7344 -0.9222 20 1 7.8005 -4.7993 -1.1546 21 6 7.7317 -2.9253 -2.2197 22 6 9.0372 -3.0287 -2.9523 23 6 10.1433 -3.4273 -2.4106 24 6 10.2711 -3.8566 -0.9783 25 6 9.0712 -3.3536 -0.1699 26 1 -0.4850 0.8401 -0.0004 27 1 -0.4945 -2.9540 0.9980 28 1 -0.7219 -2.1589 -0.6183 29 1 0.3842 -4.0215 -1.7864 30 1 -0.1728 -4.9839 -0.3428 31 1 2.8113 -3.6316 -1.8225 32 1 2.9525 -5.2173 -1.0262 33 1 4.0541 -3.2598 0.6861 34 1 6.6587 -3.9181 0.9018 35 1 6.5169 -2.3324 0.1054 36 1 7.5310 -1.8799 -1.9849 37 1 6.9318 -3.3140 -2.8500 38 1 9.0552 -2.7532 -3.9964 39 1 11.0281 -3.4570 -3.0291 40 1 10.3131 -4.9448 -0.9296 41 1 11.1873 -3.4425 -0.5574 42 1 9.1251 -2.2701 -0.0632 43 1 9.0713 -3.8222 0.8142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483672569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:22 Heat of formation + Delta-G solvation = -3.618343 kcal Electronic energy + Delta-G solvation = -21846.050097 eV Core-core repulsion = 18698.682035 eV Total energy + Delta-G solvation = -3147.368061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.04931 -39.94055 -38.92981 -35.42463 -34.23654 -33.70969 -31.58515 -30.07005 -29.69035 -27.57666 -25.39127 -24.19847 -23.55779 -22.24137 -21.31072 -20.79798 -18.92080 -18.65317 -17.72091 -17.19459 -17.07974 -16.63847 -16.26664 -15.78121 -15.51665 -15.21583 -14.82467 -14.69845 -14.28634 -13.81161 -13.73534 -13.48142 -13.28516 -13.17898 -12.98569 -12.92965 -12.69533 -12.59456 -12.40258 -12.28659 -11.83278 -11.64381 -11.60838 -11.49666 -11.13740 -10.99252 -10.85937 -10.54005 -9.94575 -9.80933 -8.88466 -7.86701 -5.18336 1.43099 1.44193 1.45791 1.54266 1.75271 2.33744 2.48891 3.36065 3.44880 3.72219 3.78511 3.86300 3.96106 4.11539 4.20210 4.29489 4.35671 4.44258 4.49403 4.59227 4.65402 4.70355 4.75159 4.78198 4.82939 4.88868 4.97177 5.05211 5.06105 5.10614 5.14012 5.24163 5.33946 5.39217 5.51430 5.55076 5.61458 5.75160 5.80313 5.97703 6.10157 6.66940 6.94599 7.35999 7.65265 8.65007 9.31311 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.004403 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.109973 B = 6357.459979 C = 7412.511923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.301 1.301 6 H -0.293 1.293 7 C -0.205 4.205 8 H 0.090 0.910 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.131 3.869 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.584 6.584 18 C -0.132 4.132 19 C -0.065 4.065 20 H 0.065 0.935 21 C -0.094 4.094 22 C -0.168 4.168 23 C -0.160 4.160 24 C -0.091 4.091 25 C -0.112 4.112 26 H 0.244 0.756 27 H 0.023 0.977 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.408 0.592 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.872 -9.685 1.852 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.228 1.228 6 H -0.221 1.221 7 C -0.333 4.333 8 H 0.107 0.893 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.006 3.994 15 N -0.366 5.366 16 C 0.292 3.708 17 O -0.465 6.465 18 C -0.172 4.172 19 C -0.084 4.084 20 H 0.083 0.917 21 C -0.131 4.131 22 C -0.186 4.186 23 C -0.178 4.178 24 C -0.128 4.128 25 C -0.149 4.149 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.243 0.757 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.984 -9.717 1.087 19.597 hybrid contribution -0.352 1.548 0.054 1.588 sum 16.632 -8.170 1.141 18.565 Atomic orbital electron populations 1.70018 1.06388 1.25092 1.59013 1.25537 0.96412 1.00566 1.03974 0.85160 0.78508 0.80267 0.76393 1.18639 1.22847 1.22055 1.19274 0.90655 0.82392 1.40973 0.89275 1.46004 1.03589 1.00094 1.85851 1.22038 0.87869 0.92077 0.96328 1.23485 0.96047 0.98099 0.99866 1.22550 0.92971 0.84703 0.96965 0.91263 1.21523 0.83750 0.98687 0.95442 1.46035 1.05904 1.61033 1.23649 1.21326 0.85819 0.78012 0.85594 1.90622 1.87603 1.45456 1.22807 1.21823 0.90616 1.03965 1.00747 1.20891 0.93560 0.99854 0.94052 0.91668 1.20577 0.95974 0.99613 0.96954 1.22129 0.94799 1.01935 0.99752 1.22285 0.97575 1.00040 0.97878 1.20532 0.98951 1.01289 0.91993 1.21710 0.92715 1.01579 0.98941 0.94660 0.95914 0.94729 0.90484 0.88254 0.94480 0.90647 0.75701 0.86034 0.88073 0.91899 0.92196 0.88356 0.86900 0.90324 0.89363 0.91516 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.41 11.51 21.65 0.25 -57.16 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.20 -10.81 10.55 84.03 0.89 -9.92 16 8 H 0.09 4.43 7.50 -2.91 -0.02 4.41 16 9 N -0.63 -30.15 3.65 -713.95 -2.61 -32.76 16 10 C 0.14 6.51 7.39 83.17 0.61 7.13 16 11 C -0.14 -4.69 8.03 30.93 0.25 -4.45 16 12 C 0.13 4.87 4.10 41.79 0.17 5.04 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.13 4.55 5.52 86.38 0.48 5.03 16 15 N -0.72 -22.62 5.33 -463.03 -2.47 -25.09 16 16 C 0.50 15.71 7.58 87.66 0.66 16.38 16 17 O -0.58 -22.33 14.03 -3.04 -0.04 -22.37 16 18 C -0.13 -2.93 5.18 29.85 0.15 -2.78 16 19 C -0.06 -1.45 1.88 -10.65 -0.02 -1.47 16 20 H 0.06 1.66 7.96 -2.39 -0.02 1.64 16 21 C -0.09 -2.51 5.04 29.65 0.15 -2.36 16 22 C -0.17 -3.92 9.80 27.03 0.26 -3.65 16 23 C -0.16 -3.05 9.80 27.03 0.26 -2.78 16 24 C -0.09 -1.40 6.12 29.71 0.18 -1.22 16 25 C -0.11 -1.84 5.32 30.79 0.16 -1.68 16 26 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 1.82 7.12 -2.39 -0.02 1.80 16 29 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 30 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.41 11.98 8.37 -92.71 -0.78 11.20 16 34 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.10 2.14 8.11 -2.39 -0.02 2.12 16 36 H 0.06 1.68 8.08 -2.38 -0.02 1.66 16 37 H 0.06 1.99 6.21 -2.38 -0.01 1.97 16 38 H 0.10 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.73 344.53 2.05 -66.68 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.20 Total: 23.73 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 4.69 Total: -0.34 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.83 Total: -115.02 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.04 Total: -22.37 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.73 2.05 -66.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483672569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.063 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds