Wall clock time and date at job start Tue Mar 31 2020 00:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00365 * 2 1 4 4 H 1.48502 * 109.47347 * 270.00512 * 3 2 1 5 5 H 1.48504 * 109.46885 * 30.00028 * 3 2 1 6 6 H 1.48492 * 109.47414 * 149.99687 * 3 2 1 7 7 C 1.38811 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00194 * 179.72991 * 7 2 1 9 9 N 1.36946 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99769 * 174.95448 * 9 7 2 11 11 C 1.52999 * 112.84886 * 65.09878 * 10 9 7 12 12 N 1.46503 * 109.47129 * 65.97434 * 11 10 9 13 13 C 1.34772 * 119.99507 * 174.93337 * 12 11 10 14 14 O 1.21277 * 120.00553 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.99716 * 180.02562 * 13 12 11 16 16 C 1.52997 * 119.29462 * 250.52264 * 15 13 12 17 17 C 1.52998 * 60.37923 * 248.69273 * 16 15 13 18 18 H 1.08998 * 119.75667 * 111.12114 * 17 16 15 19 19 C 1.54270 * 118.20030 * 266.38684 * 17 16 15 20 20 C 1.54886 * 104.19342 * 87.78565 * 19 17 16 21 21 C 1.54265 * 117.41379 * 46.17572 * 15 13 12 22 22 C 1.53782 * 113.61711 * 293.89908 * 10 9 7 23 23 C 1.54058 * 86.98287 * 270.84022 * 22 10 9 24 24 C 1.53774 * 87.07852 * 334.57012 * 23 22 10 25 25 H 0.96997 * 119.99583 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99533 * 354.96425 * 9 7 2 27 27 H 1.08997 * 109.46732 * 185.97928 * 11 10 9 28 28 H 1.09004 * 109.46778 * 305.97627 * 11 10 9 29 29 H 0.96995 * 119.99897 * 354.93791 * 12 11 10 30 30 H 1.09001 * 117.46628 * 356.28827 * 16 15 13 31 31 H 1.09007 * 117.45930 * 141.09747 * 16 15 13 32 32 H 1.09000 * 110.48842 * 206.46501 * 19 17 16 33 33 H 1.09000 * 110.48357 * 328.97943 * 19 17 16 34 34 H 1.08996 * 110.75812 * 80.37763 * 20 19 17 35 35 H 1.09000 * 110.75555 * 203.55652 * 20 19 17 36 36 H 1.09000 * 110.48408 * 235.05135 * 21 15 13 37 37 H 1.09002 * 110.48360 * 357.68999 * 21 15 13 38 38 H 1.09004 * 113.61126 * 25.43225 * 22 10 9 39 39 H 1.09000 * 113.61386 * 156.33648 * 22 10 9 40 40 H 1.09000 * 113.61584 * 220.02032 * 23 22 10 41 41 H 1.09002 * 113.68849 * 89.12996 * 23 22 10 42 42 H 1.09001 * 113.61060 * 270.87918 * 24 23 22 43 43 H 1.09003 * 113.69318 * 139.99160 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0538 -3.6543 -0.1127 11 6 2.9601 -3.9269 1.0895 12 7 2.1380 -4.1255 2.2857 13 6 2.7169 -4.4819 3.4495 14 8 3.9182 -4.6378 3.5066 15 6 1.8712 -4.6867 4.6800 16 6 1.9590 -3.6762 5.8254 17 6 2.4998 -5.0935 6.0242 18 1 3.5735 -5.2541 6.1223 19 6 1.5639 -6.1503 6.6465 20 6 0.8068 -6.7477 5.4346 21 6 0.5828 -5.5209 4.5255 22 6 2.7548 -3.8439 -1.4682 23 6 1.4468 -4.4909 -1.9622 24 6 1.1607 -4.8468 -0.4938 25 1 -0.4849 0.8401 0.0004 26 1 0.3584 -2.3897 0.0736 27 1 3.5520 -4.8229 0.9024 28 1 3.6256 -3.0773 1.2428 29 1 1.1773 -4.0005 2.2402 30 1 2.6860 -2.8697 5.7297 31 1 1.0329 -3.4152 6.3376 32 1 2.1434 -6.9224 7.1526 33 1 0.8669 -5.6810 7.3407 34 1 1.4203 -7.4894 4.9231 35 1 -0.1418 -7.1835 5.7483 36 1 -0.2813 -4.9567 4.8767 37 1 0.4461 -5.8229 3.4872 38 1 2.9965 -2.9067 -1.9696 39 1 3.5970 -4.5349 -1.4314 40 1 1.6037 -5.3609 -2.5998 41 1 0.7383 -3.7786 -2.3849 42 1 1.5678 -5.8116 -0.1911 43 1 0.1166 -4.7195 -0.2077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484643642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:10 Heat of formation + Delta-G solvation = 11.939633 kcal Electronic energy + Delta-G solvation = -22368.908868 eV Core-core repulsion = 19222.215451 eV Total energy + Delta-G solvation = -3146.693417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36650 -38.95858 -37.59688 -33.87679 -33.25526 -31.72044 -30.07787 -28.82684 -26.99385 -25.26656 -23.99416 -23.15806 -22.12635 -21.28904 -20.29160 -19.06317 -18.09455 -17.20756 -16.94944 -15.66288 -15.26595 -15.13419 -14.69406 -14.30078 -14.19864 -13.73095 -13.38789 -13.28389 -13.16793 -12.99472 -12.64132 -12.07199 -11.78931 -11.65303 -11.28850 -11.21159 -11.10986 -11.04001 -11.01750 -10.82864 -10.37433 -10.36449 -10.21869 -10.12927 -9.70175 -9.67397 -9.51939 -9.32305 -8.88508 -8.45694 -7.05003 -5.83284 -3.12865 2.88396 3.40688 3.47087 3.48145 3.51769 3.76996 4.38883 4.53312 4.61146 4.73809 5.03297 5.15761 5.19245 5.25903 5.28880 5.32469 5.36716 5.47919 5.50307 5.55093 5.60142 5.72948 5.74866 5.76332 5.85200 5.96432 6.00571 6.09289 6.14920 6.15938 6.20793 6.29536 6.33888 6.41451 6.52915 6.74563 6.91534 6.99825 7.08914 7.69371 8.04551 8.35364 8.68868 9.46784 10.00369 10.35667 11.38816 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.005304 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.436961 B = 5277.397230 C = 6179.208565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.174 3.826 11 C 0.120 3.880 12 N -0.699 5.699 13 C 0.551 3.449 14 O -0.557 6.557 15 C -0.174 4.174 16 C -0.120 4.120 17 C -0.134 4.134 18 H 0.117 0.883 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.086 4.086 22 C -0.150 4.150 23 C -0.128 4.128 24 C -0.143 4.143 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.402 0.598 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -13.088 8.186 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.006 4.006 12 N -0.347 5.347 13 C 0.336 3.664 14 O -0.436 6.436 15 C -0.177 4.177 16 C -0.158 4.158 17 C -0.152 4.152 18 H 0.135 0.865 19 C -0.133 4.133 20 C -0.160 4.160 21 C -0.123 4.123 22 C -0.191 4.191 23 C -0.166 4.166 24 C -0.181 4.181 25 H 0.065 0.935 26 H 0.221 0.779 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.237 0.763 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.571 -13.035 8.176 15.397 hybrid contribution -0.222 1.196 -0.157 1.226 sum 0.349 -11.839 8.019 14.303 Atomic orbital electron populations 1.69655 1.05054 1.25720 1.57500 1.24709 0.95459 0.97591 1.02708 0.86232 0.78791 0.83908 0.77531 1.21693 1.21819 1.20742 1.19105 0.91052 0.83644 1.42739 0.91172 1.42064 1.05822 0.98941 1.87177 1.20808 0.92373 0.87613 0.91168 1.21855 0.94001 0.99980 0.84779 1.45697 1.11707 1.68202 1.09123 1.19254 0.87326 0.76398 0.83378 1.90645 1.14946 1.52777 1.85203 1.22362 0.99221 1.06433 0.89718 1.23072 1.02966 0.92366 0.97363 1.23331 1.00004 0.95418 0.96472 0.86504 1.21983 0.97251 0.96830 0.97230 1.22572 1.00133 0.97569 0.95695 1.21806 0.94711 0.95179 1.00631 1.23351 0.96075 1.00819 0.98824 1.22678 0.98704 0.99655 0.95543 1.23124 0.99958 0.97776 0.97248 0.93503 0.77913 0.92589 0.91705 0.76349 0.87902 0.88137 0.91116 0.91174 0.91369 0.91070 0.90744 0.90730 0.90615 0.91410 0.92793 0.89974 0.90559 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.16 9.12 -15.06 -0.14 -6.30 16 8 H 0.07 1.85 7.58 -52.49 -0.40 1.46 16 9 N -0.70 -16.06 5.18 -46.48 -0.24 -16.30 16 10 C 0.17 3.22 0.77 -131.01 -0.10 3.12 16 11 C 0.12 2.25 5.04 -4.04 -0.02 2.23 16 12 N -0.70 -12.16 5.25 -60.29 -0.32 -12.47 16 13 C 0.55 9.75 7.40 -10.98 -0.08 9.67 16 14 O -0.56 -11.71 16.78 5.56 0.09 -11.62 16 15 C -0.17 -2.42 2.67 -154.54 -0.41 -2.83 16 16 C -0.12 -1.52 9.87 -26.73 -0.26 -1.79 16 17 C -0.13 -1.64 6.54 -89.50 -0.59 -2.23 16 18 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 19 C -0.10 -0.91 6.63 -25.07 -0.17 -1.07 16 20 C -0.12 -1.16 6.88 -25.04 -0.17 -1.34 16 21 C -0.09 -0.96 6.18 -25.37 -0.16 -1.12 16 22 C -0.15 -2.63 7.30 -25.77 -0.19 -2.82 16 23 C -0.13 -2.04 8.00 -25.78 -0.21 -2.25 16 24 C -0.14 -2.22 7.19 -25.92 -0.19 -2.41 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.39 9.45 7.86 -40.82 -0.32 9.13 16 27 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 28 H 0.06 1.40 7.64 -51.93 -0.40 1.01 16 29 H 0.40 6.65 8.01 -40.82 -0.33 6.32 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.84 7.66 -51.93 -0.40 0.44 16 38 H 0.08 1.49 7.87 -51.93 -0.41 1.08 16 39 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -30.11 348.91 -9.57 -39.68 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.29 Total: 14.01 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.78 Total: -9.46 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.17 Total: -54.97 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.11 -9.57 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484643642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.615 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds