Wall clock time and date at job start Tue Mar 31 2020 00:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00365 * 2 1 4 4 H 1.48502 * 109.47347 * 270.00512 * 3 2 1 5 5 H 1.48504 * 109.46885 * 30.00028 * 3 2 1 6 6 H 1.48492 * 109.47414 * 149.99687 * 3 2 1 7 7 C 1.38811 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00194 * 179.72991 * 7 2 1 9 9 N 1.36946 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99769 * 174.95448 * 9 7 2 11 11 C 1.52999 * 112.84886 * 65.09878 * 10 9 7 12 12 N 1.46503 * 109.47129 * 65.97434 * 11 10 9 13 13 C 1.34772 * 119.99507 * 174.93337 * 12 11 10 14 14 O 1.21277 * 120.00553 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.99716 * 180.02562 * 13 12 11 16 16 C 1.52997 * 119.29462 * 250.52264 * 15 13 12 17 17 C 1.52998 * 60.37923 * 248.69273 * 16 15 13 18 18 H 1.08998 * 119.75667 * 111.12114 * 17 16 15 19 19 C 1.54270 * 118.20030 * 266.38684 * 17 16 15 20 20 C 1.54886 * 104.19342 * 87.78565 * 19 17 16 21 21 C 1.54265 * 117.41379 * 46.17572 * 15 13 12 22 22 C 1.53782 * 113.61711 * 293.89908 * 10 9 7 23 23 C 1.54058 * 86.98287 * 270.84022 * 22 10 9 24 24 C 1.53774 * 87.07852 * 334.57012 * 23 22 10 25 25 H 0.96997 * 119.99583 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99533 * 354.96425 * 9 7 2 27 27 H 1.08997 * 109.46732 * 185.97928 * 11 10 9 28 28 H 1.09004 * 109.46778 * 305.97627 * 11 10 9 29 29 H 0.96995 * 119.99897 * 354.93791 * 12 11 10 30 30 H 1.09001 * 117.46628 * 356.28827 * 16 15 13 31 31 H 1.09007 * 117.45930 * 141.09747 * 16 15 13 32 32 H 1.09000 * 110.48842 * 206.46501 * 19 17 16 33 33 H 1.09000 * 110.48357 * 328.97943 * 19 17 16 34 34 H 1.08996 * 110.75812 * 80.37763 * 20 19 17 35 35 H 1.09000 * 110.75555 * 203.55652 * 20 19 17 36 36 H 1.09000 * 110.48408 * 235.05135 * 21 15 13 37 37 H 1.09002 * 110.48360 * 357.68999 * 21 15 13 38 38 H 1.09004 * 113.61126 * 25.43225 * 22 10 9 39 39 H 1.09000 * 113.61386 * 156.33648 * 22 10 9 40 40 H 1.09000 * 113.61584 * 220.02032 * 23 22 10 41 41 H 1.09002 * 113.68849 * 89.12996 * 23 22 10 42 42 H 1.09001 * 113.61060 * 270.87918 * 24 23 22 43 43 H 1.09003 * 113.69318 * 139.99160 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0538 -3.6543 -0.1127 11 6 2.9601 -3.9269 1.0895 12 7 2.1380 -4.1255 2.2857 13 6 2.7169 -4.4819 3.4495 14 8 3.9182 -4.6378 3.5066 15 6 1.8712 -4.6867 4.6800 16 6 1.9590 -3.6762 5.8254 17 6 2.4998 -5.0935 6.0242 18 1 3.5735 -5.2541 6.1223 19 6 1.5639 -6.1503 6.6465 20 6 0.8068 -6.7477 5.4346 21 6 0.5828 -5.5209 4.5255 22 6 2.7548 -3.8439 -1.4682 23 6 1.4468 -4.4909 -1.9622 24 6 1.1607 -4.8468 -0.4938 25 1 -0.4849 0.8401 0.0004 26 1 0.3584 -2.3897 0.0736 27 1 3.5520 -4.8229 0.9024 28 1 3.6256 -3.0773 1.2428 29 1 1.1773 -4.0005 2.2402 30 1 2.6860 -2.8697 5.7297 31 1 1.0329 -3.4152 6.3376 32 1 2.1434 -6.9224 7.1526 33 1 0.8669 -5.6810 7.3407 34 1 1.4203 -7.4894 4.9231 35 1 -0.1418 -7.1835 5.7483 36 1 -0.2813 -4.9567 4.8767 37 1 0.4461 -5.8229 3.4872 38 1 2.9965 -2.9067 -1.9696 39 1 3.5970 -4.5349 -1.4314 40 1 1.6037 -5.3609 -2.5998 41 1 0.7383 -3.7786 -2.3849 42 1 1.5678 -5.8116 -0.1911 43 1 0.1166 -4.7195 -0.2077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484643642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:08 Heat of formation + Delta-G solvation = -6.444633 kcal Electronic energy + Delta-G solvation = -22369.706069 eV Core-core repulsion = 19222.215451 eV Total energy + Delta-G solvation = -3147.490618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55514 -40.35003 -38.90819 -35.36182 -35.20263 -32.59227 -31.95473 -29.95526 -28.31396 -26.73044 -25.80079 -24.39433 -23.24625 -22.60179 -21.20495 -20.37758 -19.58049 -19.12347 -18.18274 -17.10308 -16.77525 -16.30761 -16.14182 -15.84643 -15.52908 -15.24286 -15.05159 -14.48657 -14.26947 -14.04473 -13.92908 -13.65820 -13.11034 -12.99237 -12.92223 -12.78677 -12.57511 -12.16515 -12.04199 -12.01105 -11.98312 -11.83516 -11.64163 -11.44777 -11.34340 -11.00597 -10.87785 -10.65382 -10.60502 -9.96996 -9.00248 -7.95068 -5.21893 1.43899 1.45162 1.52296 1.54343 2.23060 2.53610 2.66652 3.36257 3.48384 3.66057 3.73009 3.75728 3.80080 3.92455 3.99043 4.07551 4.20626 4.26277 4.43831 4.49530 4.60138 4.66397 4.72550 4.79923 4.81755 4.86362 4.88887 4.96619 4.99088 5.04047 5.11187 5.18165 5.20959 5.28993 5.29875 5.41431 5.47967 5.49871 5.60962 5.69617 6.29048 6.63323 7.27535 7.35472 8.08502 8.33037 9.27403 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.005304 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.436961 B = 5277.397230 C = 6179.208565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.063 0.937 9 N -0.704 5.704 10 C 0.160 3.840 11 C 0.129 3.871 12 N -0.695 5.695 13 C 0.544 3.456 14 O -0.597 6.597 15 C -0.192 4.192 16 C -0.120 4.120 17 C -0.127 4.127 18 H 0.099 0.901 19 C -0.089 4.089 20 C -0.117 4.117 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.250 0.750 26 H 0.378 0.622 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.407 0.593 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 -15.051 8.959 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.257 4.257 3 Si 0.788 3.212 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.081 0.919 9 N -0.343 5.343 10 C 0.068 3.932 11 C 0.002 3.998 12 N -0.343 5.343 13 C 0.332 3.668 14 O -0.479 6.479 15 C -0.195 4.195 16 C -0.157 4.157 17 C -0.146 4.146 18 H 0.117 0.883 19 C -0.126 4.126 20 C -0.155 4.155 21 C -0.120 4.120 22 C -0.191 4.191 23 C -0.157 4.157 24 C -0.163 4.163 25 H 0.059 0.941 26 H 0.211 0.789 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.243 0.757 30 H 0.102 0.898 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.231 -15.028 8.941 17.488 hybrid contribution 0.140 1.758 -0.399 1.808 sum -0.091 -13.270 8.542 15.782 Atomic orbital electron populations 1.69766 1.06025 1.25775 1.59587 1.25300 0.96182 1.00146 1.04035 0.85386 0.77654 0.80891 0.77311 1.21524 1.22170 1.20601 1.19273 0.90858 0.85007 1.40415 0.91901 1.42084 1.05454 0.99686 1.87122 1.21085 0.93413 0.87215 0.91494 1.21670 0.93748 0.98921 0.85413 1.45689 1.11785 1.67873 1.08935 1.19982 0.87264 0.75218 0.84359 1.90614 1.16886 1.54526 1.85908 1.22461 1.00535 1.08167 0.88383 1.23149 1.03654 0.92107 0.96799 1.23455 0.99836 0.95962 0.95345 0.88272 1.22027 0.97004 0.96145 0.97445 1.22574 1.01234 0.96595 0.95075 1.21861 0.93484 0.95541 1.01104 1.23381 0.97824 1.00359 0.97504 1.22595 0.96811 1.00079 0.96259 1.23072 0.99567 0.97156 0.96462 0.94099 0.78862 0.91376 0.95471 0.75723 0.89849 0.85585 0.89903 0.89296 0.92093 0.88537 0.89348 0.91033 0.93463 0.88931 0.89592 0.92106 0.87946 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.44 13.06 21.65 0.28 -56.16 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.96 46.29 29.55 68.60 2.03 48.32 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.22 -11.96 9.12 84.03 0.77 -11.19 16 8 H 0.06 3.41 7.58 -2.91 -0.02 3.39 16 9 N -0.70 -32.65 5.18 -300.96 -1.56 -34.21 16 10 C 0.16 5.84 0.77 4.13 0.00 5.84 16 11 C 0.13 4.84 5.04 86.38 0.44 5.27 16 12 N -0.69 -24.10 5.25 -463.05 -2.43 -26.53 16 13 C 0.54 19.37 7.40 87.66 0.65 20.02 16 14 O -0.60 -25.72 16.78 -3.02 -0.05 -25.77 16 15 C -0.19 -5.17 2.67 -52.20 -0.14 -5.31 16 16 C -0.12 -2.92 9.87 30.59 0.30 -2.62 16 17 C -0.13 -2.97 6.54 -10.07 -0.07 -3.04 16 18 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 19 C -0.09 -1.41 6.63 31.67 0.21 -1.20 16 20 C -0.12 -1.86 6.88 31.69 0.22 -1.64 16 21 C -0.08 -1.64 6.18 31.47 0.19 -1.45 16 22 C -0.15 -5.11 7.30 31.22 0.23 -4.88 16 23 C -0.12 -3.56 8.00 31.21 0.25 -3.31 16 24 C -0.12 -3.58 7.19 31.12 0.22 -3.36 16 25 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.38 18.70 7.86 -92.71 -0.73 17.97 16 27 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 28 H 0.03 1.21 7.64 -2.38 -0.02 1.19 16 29 H 0.41 13.26 8.01 -92.71 -0.74 12.52 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 38 H 0.05 1.86 7.87 -2.38 -0.02 1.84 16 39 H 0.09 2.67 8.04 -2.39 -0.02 2.65 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.10 2.47 8.10 -2.39 -0.02 2.45 16 43 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 Total: -1.00 -66.50 348.91 1.54 -64.96 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.47 Total: 39.35 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.74 Total: -9.96 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.71 Total: -116.89 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -66.50 1.54 -64.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484643642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.520 kcal (2) G-P(sol) polarization free energy of solvation -66.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds