Wall clock time and date at job start Tue Mar 31 2020 00:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99951 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99799 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99701 * 359.73557 * 7 2 1 9 9 N 1.36935 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 C 1.53782 * 113.60966 * 274.13343 * 11 10 9 13 13 C 1.53956 * 87.01867 * 220.05098 * 12 11 10 14 14 N 1.46498 * 113.74369 * 139.94515 * 13 12 11 15 15 C 1.34777 * 120.00160 * 107.40750 * 14 13 12 16 16 O 1.21280 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.53004 * 119.29627 * 250.94315 * 17 15 14 19 19 C 1.53873 * 121.32881 * 179.11098 * 17 15 14 20 20 H 1.09000 * 121.33315 * 359.43125 * 19 17 15 21 21 C 1.54262 * 106.60012 * 221.93382 * 19 17 15 22 22 C 1.54892 * 104.19342 * 23.61226 * 21 19 17 23 23 C 1.54264 * 117.41254 * 45.28707 * 17 15 14 24 24 C 1.53777 * 87.11069 * 25.36308 * 13 12 11 25 25 H 0.97000 * 120.00663 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 27 27 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 28 28 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 29 29 H 1.08999 * 112.85112 * 45.32920 * 11 10 9 30 30 H 1.09000 * 113.61464 * 334.56613 * 12 11 10 31 31 H 1.08999 * 113.61337 * 105.47433 * 12 11 10 32 32 H 1.09005 * 113.54041 * 270.81392 * 13 12 11 33 33 H 0.97003 * 120.00082 * 287.39658 * 14 13 12 34 34 H 1.09000 * 117.45894 * 356.29280 * 18 17 15 35 35 H 1.08997 * 117.45692 * 141.09677 * 18 17 15 36 36 H 1.09000 * 110.49070 * 264.93597 * 21 19 17 37 37 H 1.09000 * 110.60481 * 142.34553 * 21 19 17 38 38 H 1.09002 * 110.75358 * 203.74170 * 22 21 19 39 39 H 1.08999 * 110.75936 * 80.37550 * 22 21 19 40 40 H 1.09001 * 110.48192 * 235.04605 * 23 17 15 41 41 H 1.08995 * 110.48887 * 357.68967 * 23 17 15 42 42 H 1.09007 * 113.61722 * 220.08879 * 24 13 12 43 43 H 1.08999 * 113.69230 * 89.20070 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0053 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0076 11 6 5.6164 -2.1911 0.0075 12 6 6.2044 -1.9852 -1.3985 13 6 7.4203 -2.8005 -0.9217 14 7 7.9389 -3.7298 -1.9285 15 6 9.1061 -3.4681 -2.5494 16 8 9.7269 -2.4630 -2.2751 17 6 9.6393 -4.4239 -3.5855 18 6 10.8707 -5.2712 -3.2591 19 6 10.9581 -4.1452 -4.3276 20 1 11.5394 -3.2442 -4.1315 21 6 10.7199 -4.5190 -5.8052 22 6 9.1851 -4.4083 -5.9822 23 6 8.6455 -4.9571 -4.6380 24 6 6.4790 -3.4608 0.0994 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3620 -0.0029 27 1 3.8485 -3.0379 0.9003 28 1 3.8492 -3.0467 -0.8796 29 1 5.9029 -1.4161 0.7184 30 1 5.6326 -2.4747 -2.1869 31 1 6.4372 -0.9451 -1.6264 32 1 8.2010 -2.1915 -0.4658 33 1 7.4423 -4.5336 -2.1481 34 1 11.3566 -5.1025 -2.2981 35 1 10.8813 -6.3009 -3.6163 36 1 11.0538 -5.5382 -5.9996 37 1 11.2314 -3.8185 -6.4653 38 1 8.8468 -5.0251 -6.8149 39 1 8.8863 -3.3696 -6.1232 40 1 8.6445 -6.0471 -4.6438 41 1 7.6433 -4.5748 -4.4446 42 1 6.9331 -3.6102 1.0790 43 1 5.9819 -4.3547 -0.2774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485097970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:59 Heat of formation + Delta-G solvation = 13.830448 kcal Electronic energy + Delta-G solvation = -21328.509137 eV Core-core repulsion = 18181.897713 eV Total energy + Delta-G solvation = -3146.611425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78978 -39.33029 -37.74045 -34.72266 -33.32505 -31.94408 -31.16553 -28.88422 -27.14449 -25.60850 -24.28723 -22.94666 -22.20691 -21.12115 -20.58341 -20.02125 -19.00172 -17.54013 -17.33140 -16.28610 -15.62580 -15.22118 -15.09001 -14.59970 -14.41350 -13.85660 -13.65847 -13.51234 -13.37549 -13.27016 -12.69642 -12.37088 -12.16978 -11.95009 -11.80944 -11.55631 -11.50420 -11.44839 -11.30324 -10.93970 -10.81014 -10.66613 -10.29077 -10.25023 -10.07677 -9.96877 -9.70874 -9.56575 -9.04113 -8.86135 -7.20443 -5.75455 -3.10442 2.36161 3.00479 3.26664 3.39633 3.43111 3.47175 4.04114 4.22751 4.38119 4.52561 4.61031 4.65665 4.68216 4.84106 4.93653 4.96293 5.01158 5.06426 5.18319 5.28339 5.34169 5.47078 5.50570 5.54595 5.62069 5.67684 5.71226 5.76517 5.81672 5.83311 5.84660 5.93422 6.00747 6.08505 6.19415 6.26290 6.55278 6.69212 6.81457 7.42313 8.01117 8.12800 8.43956 9.23566 9.96228 10.16510 11.43097 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.003097 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.322647 B = 9038.188036 C = 9221.301650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.170 3.830 11 C -0.117 4.117 12 C -0.141 4.141 13 C 0.118 3.882 14 N -0.712 5.712 15 C 0.555 3.445 16 O -0.543 6.543 17 C -0.178 4.178 18 C -0.123 4.123 19 C -0.129 4.129 20 H 0.120 0.880 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.088 4.088 24 C -0.135 4.135 25 H 0.259 0.741 26 H 0.361 0.639 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.054 -13.562 -9.231 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.043 3.957 11 C -0.136 4.136 12 C -0.180 4.180 13 C 0.013 3.987 14 N -0.362 5.362 15 C 0.342 3.658 16 O -0.420 6.420 17 C -0.181 4.181 18 C -0.160 4.160 19 C -0.148 4.148 20 H 0.138 0.862 21 C -0.135 4.135 22 C -0.161 4.161 23 C -0.126 4.126 24 C -0.174 4.174 25 H 0.069 0.931 26 H 0.194 0.806 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.236 0.764 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 23.245 -12.907 -9.028 28.079 hybrid contribution 0.134 0.953 0.005 0.962 sum 23.379 -11.954 -9.023 27.765 Atomic orbital electron populations 1.69700 1.05116 1.25821 1.57735 1.24674 0.95246 0.97242 1.02094 0.86535 0.79221 0.84910 0.77810 1.21076 1.21739 1.20300 1.19070 0.80727 0.94703 1.42855 0.89286 1.42705 1.03982 1.02327 1.91098 1.20571 0.87460 0.89242 0.98428 1.22591 0.96318 0.97471 0.97212 1.23512 0.95957 1.00717 0.97779 1.22691 0.94908 0.91934 0.89151 1.45965 1.22893 1.26190 1.41109 1.19388 0.80519 0.85266 0.80664 1.90692 1.58808 1.27711 1.64798 1.22454 0.92058 1.03758 0.99854 1.23471 0.96672 0.96048 0.99844 1.23749 0.98394 1.00729 0.91901 0.86238 1.22001 0.96168 1.01709 0.93575 1.22688 0.94819 1.01732 0.96877 1.21961 0.97551 1.00525 0.92532 1.23308 0.96724 0.98347 0.98989 0.93079 0.80642 0.95520 0.95512 0.89009 0.89519 0.91317 0.87047 0.76433 0.87921 0.87970 0.91073 0.90841 0.90860 0.91035 0.90556 0.90715 0.90894 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.77 13.97 55.49 0.78 -29.00 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.54 27.73 -169.99 -4.71 17.83 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 7 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.76 -18.22 5.41 -59.91 -0.32 -18.54 16 10 C 0.17 3.24 6.08 -4.04 -0.02 3.21 16 11 C -0.12 -1.74 3.75 -89.81 -0.34 -2.07 16 12 C -0.14 -1.99 7.45 -25.83 -0.19 -2.19 16 13 C 0.12 1.44 4.24 -67.03 -0.28 1.16 16 14 N -0.71 -7.66 5.19 -52.93 -0.27 -7.93 16 15 C 0.56 6.87 7.41 -10.98 -0.08 6.79 16 16 O -0.54 -8.91 16.39 5.56 0.09 -8.81 16 17 C -0.18 -1.63 2.60 -154.54 -0.40 -2.03 16 18 C -0.12 -0.92 10.00 -25.42 -0.25 -1.18 16 19 C -0.13 -1.11 6.64 -88.19 -0.59 -1.70 16 20 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 21 C -0.10 -0.65 6.64 -25.07 -0.17 -0.82 16 22 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 23 C -0.09 -0.64 6.18 -25.07 -0.16 -0.80 16 24 C -0.13 -1.55 7.39 -25.92 -0.19 -1.74 16 25 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 26 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.51 7.88 -51.93 -0.41 0.10 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.09 1.23 7.92 -51.93 -0.41 0.82 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.11 1.52 7.46 -51.93 -0.39 1.13 16 33 H 0.40 3.34 8.25 -40.82 -0.34 3.01 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.57 7.61 -51.93 -0.40 0.17 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -34.04 347.48 -9.56 -43.60 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.25 Total: 7.19 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.10 Total: -9.57 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.18 Total: -55.48 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.04 -9.56 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485097970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.427 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds