Wall clock time and date at job start Tue Mar 31 2020 00:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99951 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99799 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99701 * 359.73557 * 7 2 1 9 9 N 1.36935 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 C 1.53782 * 113.60966 * 274.13343 * 11 10 9 13 13 C 1.53956 * 87.01867 * 220.05098 * 12 11 10 14 14 N 1.46498 * 113.74369 * 139.94515 * 13 12 11 15 15 C 1.34777 * 120.00160 * 107.40750 * 14 13 12 16 16 O 1.21280 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.53004 * 119.29627 * 250.94315 * 17 15 14 19 19 C 1.53873 * 121.32881 * 179.11098 * 17 15 14 20 20 H 1.09000 * 121.33315 * 359.43125 * 19 17 15 21 21 C 1.54262 * 106.60012 * 221.93382 * 19 17 15 22 22 C 1.54892 * 104.19342 * 23.61226 * 21 19 17 23 23 C 1.54264 * 117.41254 * 45.28707 * 17 15 14 24 24 C 1.53777 * 87.11069 * 25.36308 * 13 12 11 25 25 H 0.97000 * 120.00663 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 27 27 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 28 28 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 29 29 H 1.08999 * 112.85112 * 45.32920 * 11 10 9 30 30 H 1.09000 * 113.61464 * 334.56613 * 12 11 10 31 31 H 1.08999 * 113.61337 * 105.47433 * 12 11 10 32 32 H 1.09005 * 113.54041 * 270.81392 * 13 12 11 33 33 H 0.97003 * 120.00082 * 287.39658 * 14 13 12 34 34 H 1.09000 * 117.45894 * 356.29280 * 18 17 15 35 35 H 1.08997 * 117.45692 * 141.09677 * 18 17 15 36 36 H 1.09000 * 110.49070 * 264.93597 * 21 19 17 37 37 H 1.09000 * 110.60481 * 142.34553 * 21 19 17 38 38 H 1.09002 * 110.75358 * 203.74170 * 22 21 19 39 39 H 1.08999 * 110.75936 * 80.37550 * 22 21 19 40 40 H 1.09001 * 110.48192 * 235.04605 * 23 17 15 41 41 H 1.08995 * 110.48887 * 357.68967 * 23 17 15 42 42 H 1.09007 * 113.61722 * 220.08879 * 24 13 12 43 43 H 1.08999 * 113.69230 * 89.20070 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0053 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0076 11 6 5.6164 -2.1911 0.0075 12 6 6.2044 -1.9852 -1.3985 13 6 7.4203 -2.8005 -0.9217 14 7 7.9389 -3.7298 -1.9285 15 6 9.1061 -3.4681 -2.5494 16 8 9.7269 -2.4630 -2.2751 17 6 9.6393 -4.4239 -3.5855 18 6 10.8707 -5.2712 -3.2591 19 6 10.9581 -4.1452 -4.3276 20 1 11.5394 -3.2442 -4.1315 21 6 10.7199 -4.5190 -5.8052 22 6 9.1851 -4.4083 -5.9822 23 6 8.6455 -4.9571 -4.6380 24 6 6.4790 -3.4608 0.0994 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3620 -0.0029 27 1 3.8485 -3.0379 0.9003 28 1 3.8492 -3.0467 -0.8796 29 1 5.9029 -1.4161 0.7184 30 1 5.6326 -2.4747 -2.1869 31 1 6.4372 -0.9451 -1.6264 32 1 8.2010 -2.1915 -0.4658 33 1 7.4423 -4.5336 -2.1481 34 1 11.3566 -5.1025 -2.2981 35 1 10.8813 -6.3009 -3.6163 36 1 11.0538 -5.5382 -5.9996 37 1 11.2314 -3.8185 -6.4653 38 1 8.8468 -5.0251 -6.8149 39 1 8.8863 -3.3696 -6.1232 40 1 8.6445 -6.0471 -4.6438 41 1 7.6433 -4.5748 -4.4446 42 1 6.9331 -3.6102 1.0790 43 1 5.9819 -4.3547 -0.2774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485097970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:58 Heat of formation + Delta-G solvation = -8.426247 kcal Electronic energy + Delta-G solvation = -21329.474260 eV Core-core repulsion = 18181.897713 eV Total energy + Delta-G solvation = -3147.576548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.63432 -40.29422 -38.72426 -36.49113 -34.60917 -33.21236 -32.51169 -29.64299 -28.62418 -26.67130 -25.45851 -24.19019 -23.28680 -22.33956 -21.27734 -21.08610 -20.04953 -19.44617 -18.08653 -17.40509 -16.71754 -16.32508 -16.17969 -16.10731 -15.50134 -15.31501 -14.86891 -14.63012 -14.42700 -14.10071 -13.93990 -13.69284 -13.39628 -13.19581 -13.03639 -12.86493 -12.73213 -12.21591 -12.12289 -12.04906 -11.96095 -11.87155 -11.83888 -11.47389 -11.35169 -11.32044 -10.95784 -10.71195 -10.61374 -10.03336 -9.29274 -8.04566 -5.37216 1.36428 1.38920 1.45690 1.46394 2.13963 2.46575 2.58546 3.26866 3.44362 3.46830 3.53661 3.59439 3.73275 3.79564 3.86974 3.94281 4.06502 4.25276 4.40627 4.46794 4.52288 4.58830 4.65081 4.74541 4.78582 4.80756 4.84171 4.92212 4.95881 4.96307 5.02743 5.08780 5.15210 5.18967 5.20302 5.27001 5.39653 5.45656 5.61275 5.74744 6.20188 6.54818 7.06947 7.21990 7.84608 8.02609 9.17106 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.003097 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.322647 B = 9038.188036 C = 9221.301650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.954 3.046 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.234 4.234 8 H 0.058 0.942 9 N -0.760 5.760 10 C 0.167 3.833 11 C -0.117 4.117 12 C -0.143 4.143 13 C 0.125 3.875 14 N -0.700 5.700 15 C 0.549 3.451 16 O -0.591 6.591 17 C -0.188 4.188 18 C -0.105 4.105 19 C -0.142 4.142 20 H 0.096 0.904 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.084 4.084 24 C -0.114 4.114 25 H 0.258 0.742 26 H 0.365 0.635 27 H 0.027 0.973 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.415 0.585 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.029 -15.156 -9.781 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.178 1.178 7 C -0.365 4.365 8 H 0.076 0.924 9 N -0.406 5.406 10 C 0.041 3.959 11 C -0.136 4.136 12 C -0.182 4.182 13 C 0.020 3.980 14 N -0.350 5.350 15 C 0.337 3.663 16 O -0.472 6.472 17 C -0.191 4.191 18 C -0.142 4.142 19 C -0.161 4.161 20 H 0.114 0.886 21 C -0.128 4.128 22 C -0.163 4.163 23 C -0.121 4.121 24 C -0.152 4.152 25 H 0.067 0.933 26 H 0.197 0.803 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.253 0.747 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.250 -14.562 -9.580 30.682 hybrid contribution -0.496 1.375 0.174 1.472 sum 24.755 -13.187 -9.407 29.583 Atomic orbital electron populations 1.69875 1.07073 1.26693 1.59848 1.25499 0.96126 1.01216 1.02768 0.85422 0.78641 0.79756 0.78058 1.20586 1.22089 1.17801 1.19080 0.82829 0.93516 1.41087 0.92363 1.42769 1.02466 1.04419 1.90900 1.20764 0.89701 0.87144 0.98273 1.22506 0.93673 0.99661 0.97745 1.23520 0.96927 1.00363 0.97402 1.22436 0.94049 0.92001 0.89509 1.45854 1.22558 1.26255 1.40323 1.20009 0.80340 0.85112 0.80818 1.90668 1.60194 1.29900 1.66452 1.22498 0.92928 1.04025 0.99663 1.23578 0.94508 0.96971 0.99120 1.23827 0.97895 1.00788 0.93544 0.88584 1.22003 0.95944 1.02877 0.92003 1.22709 0.95081 1.00995 0.97515 1.22002 0.96551 1.01884 0.91659 1.23221 0.95127 0.97194 0.99671 0.93309 0.80264 0.95514 0.95302 0.89197 0.89523 0.92710 0.88346 0.74720 0.88599 0.85091 0.89010 0.90814 0.88995 0.92960 0.88113 0.91278 0.89198 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 2 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.95 46.58 27.73 68.60 1.90 48.48 16 4 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.25 -11.25 6.52 99.48 0.65 -10.60 16 7 C -0.23 -13.58 10.47 84.03 0.88 -12.70 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.76 -36.03 5.41 -343.46 -1.86 -37.89 16 10 C 0.17 6.15 6.08 86.38 0.53 6.67 16 11 C -0.12 -3.26 3.75 -10.27 -0.04 -3.30 16 12 C -0.14 -3.89 7.45 31.18 0.23 -3.65 16 13 C 0.13 2.88 4.24 45.58 0.19 3.07 16 14 N -0.70 -13.88 5.19 -439.76 -2.28 -16.16 16 15 C 0.55 13.18 7.41 87.66 0.65 13.83 16 16 O -0.59 -19.69 16.39 -3.03 -0.05 -19.74 16 17 C -0.19 -3.13 2.60 -52.20 -0.14 -3.26 16 18 C -0.10 -1.32 10.00 31.44 0.31 -1.01 16 19 C -0.14 -2.29 6.64 -9.22 -0.06 -2.35 16 20 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 21 C -0.09 -1.02 6.64 31.67 0.21 -0.81 16 22 C -0.13 -1.50 6.91 31.89 0.22 -1.28 16 23 C -0.08 -1.00 6.18 31.67 0.20 -0.81 16 24 C -0.11 -2.29 7.39 31.12 0.23 -2.06 16 25 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 26 H 0.36 16.69 5.53 -92.70 -0.51 16.17 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.03 1.07 7.88 -2.39 -0.02 1.05 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.09 2.34 7.92 -2.39 -0.02 2.33 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.60 7.46 -2.38 -0.02 2.58 16 33 H 0.42 5.84 8.25 -92.71 -0.76 5.08 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.90 7.61 -2.39 -0.02 0.88 16 42 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.11 1.79 8.08 -2.39 -0.02 1.77 16 Total: -1.00 -75.31 347.48 1.56 -73.74 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.34 Total: 26.30 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 3.88 Total: -11.08 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -3.84 Total: -117.70 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.90 Total: 48.48 kcal Total: -75.31 1.56 -73.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485097970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.318 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds