Wall clock time and date at job start Tue Mar 31 2020 00:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99701 * 2 1 4 4 H 1.48495 * 109.47407 * 269.99769 * 3 2 1 5 5 H 1.48502 * 109.47301 * 30.00327 * 3 2 1 6 6 H 1.48502 * 109.47206 * 149.99676 * 3 2 1 7 7 C 1.38806 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99309 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00670 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00340 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46930 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47011 * 64.99891 * 11 10 9 13 13 N 1.46499 * 109.47122 * 304.99782 * 11 10 9 14 14 C 1.34776 * 120.00281 * 155.00466 * 13 11 10 15 15 O 1.21285 * 119.99681 * 359.97438 * 14 13 11 16 16 C 1.50693 * 120.00174 * 180.02562 * 14 13 11 17 17 C 1.52998 * 119.75435 * 250.72149 * 16 14 13 18 18 C 1.53003 * 60.37923 * 248.88054 * 17 16 14 19 19 H 1.08992 * 119.75707 * 111.12574 * 18 17 16 20 20 C 1.54266 * 118.19656 * 266.38479 * 18 17 16 21 21 C 1.54887 * 104.19888 * 87.78673 * 20 18 17 22 22 C 1.54266 * 117.41576 * 46.17653 * 16 14 13 23 23 C 1.52996 * 109.46743 * 184.99956 * 11 10 9 24 24 C 1.53001 * 117.49975 * 248.74554 * 23 11 10 25 25 C 1.53004 * 117.49682 * 180.08508 * 23 11 10 26 26 H 0.97003 * 119.99768 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99513 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46968 * 59.99815 * 10 9 7 29 29 H 1.09004 * 109.46768 * 300.00198 * 10 9 7 30 30 H 0.97001 * 119.99777 * 335.00459 * 13 11 10 31 31 H 1.09004 * 117.46267 * 141.28492 * 17 16 14 32 32 H 1.08997 * 117.46171 * 356.47247 * 17 16 14 33 33 H 1.09001 * 110.48620 * 206.46880 * 20 18 17 34 34 H 1.09004 * 110.48798 * 329.10714 * 20 18 17 35 35 H 1.09003 * 110.75327 * 80.36922 * 21 20 18 36 36 H 1.08997 * 110.75758 * 203.73836 * 21 20 18 37 37 H 1.08997 * 110.48797 * 235.04852 * 22 16 14 38 38 H 1.08998 * 110.48595 * 357.55417 * 22 16 14 39 39 H 1.09003 * 115.55087 * 34.41855 * 23 11 10 40 40 H 1.08997 * 117.49943 * 359.97438 * 24 23 11 41 41 H 1.08992 * 117.50108 * 145.02383 * 24 23 11 42 42 H 1.09005 * 117.49730 * 214.97891 * 25 23 11 43 43 H 1.08995 * 117.49766 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.4981 -4.8134 -0.9327 13 7 0.1440 -4.6763 1.1299 14 6 -1.0804 -5.2372 1.0781 15 8 -1.4208 -5.8602 0.0948 16 6 -2.0268 -5.0892 2.2414 17 6 -2.3451 -6.3005 3.1202 18 6 -3.4316 -5.7167 2.2148 19 1 -3.7818 -6.2860 1.3539 20 6 -4.3935 -4.6693 2.8127 21 6 -3.6673 -3.3186 2.5952 22 6 -2.1842 -3.6824 2.8545 23 6 1.8247 -6.1411 0.1245 24 6 1.8347 -7.0691 -1.0919 25 6 1.0021 -7.4311 0.1405 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6849 -3.7145 0.8894 29 1 2.6849 -3.7144 -0.8906 30 1 0.4162 -4.1777 1.9162 31 1 -2.4407 -6.1321 4.1929 32 1 -1.9119 -7.2583 2.8320 33 1 -5.3461 -4.6799 2.2830 34 1 -4.5453 -4.8539 3.8762 35 1 -3.8054 -2.9660 1.5730 36 1 -4.0135 -2.5740 3.3119 37 1 -1.9791 -3.7075 3.9247 38 1 -1.5228 -2.9732 2.3569 39 1 2.7233 -6.1095 0.7408 40 1 1.2989 -6.7383 -1.9816 41 1 2.7396 -7.6482 -1.2757 42 1 1.3598 -8.2483 0.7670 43 1 -0.0810 -7.3383 0.0619 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498795104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:51 Heat of formation + Delta-G solvation = 18.549400 kcal Electronic energy + Delta-G solvation = -22464.415741 eV Core-core repulsion = 19318.008945 eV Total energy + Delta-G solvation = -3146.406796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42666 -38.62463 -36.73400 -34.98567 -33.33575 -31.56574 -31.11022 -28.76294 -27.56671 -24.17024 -23.29937 -22.14894 -21.94013 -21.46477 -20.38377 -19.94068 -18.94904 -17.28984 -16.76225 -16.12657 -15.37631 -14.96135 -14.74421 -14.65996 -14.18419 -13.47455 -13.30696 -13.14097 -13.08729 -12.95651 -12.81408 -12.12982 -11.69595 -11.63422 -11.18329 -11.05699 -11.02747 -11.00460 -10.89948 -10.83212 -10.78478 -10.32233 -10.18847 -10.08653 -9.92419 -9.69697 -9.58922 -9.29938 -8.91747 -8.55043 -6.96656 -5.78814 -3.08481 2.82992 3.40104 3.42456 3.47305 3.48516 3.72184 4.15418 4.48999 4.55108 4.68257 4.83720 4.92116 5.09141 5.19770 5.25343 5.31542 5.44220 5.46526 5.50283 5.54903 5.60286 5.66607 5.75806 5.80112 5.86563 5.91889 5.93420 6.01298 6.10320 6.17696 6.23928 6.25144 6.30946 6.38787 6.46227 6.52390 6.54530 6.70509 7.00211 7.67403 7.96960 8.38886 8.64210 9.50851 10.06482 10.42386 11.43343 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.006201 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.866727 B = 4514.290981 C = 6336.778612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.086 0.914 13 N -0.701 5.701 14 C 0.561 3.439 15 O -0.549 6.549 16 C -0.173 4.173 17 C -0.124 4.124 18 C -0.130 4.130 19 H 0.117 0.883 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.089 4.089 23 C -0.162 4.162 24 C -0.172 4.172 25 C -0.185 4.185 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.025 0.975 29 H 0.035 0.965 30 H 0.404 0.596 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 -13.167 7.115 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.104 0.896 13 N -0.350 5.350 14 C 0.348 3.652 15 O -0.428 6.428 16 C -0.176 4.176 17 C -0.162 4.162 18 C -0.149 4.149 19 H 0.135 0.865 20 C -0.134 4.134 21 C -0.158 4.158 22 C -0.127 4.127 23 C -0.182 4.182 24 C -0.209 4.209 25 C -0.222 4.222 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.239 0.761 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.137 -13.444 6.403 15.454 hybrid contribution 0.502 1.215 0.266 1.341 sum -3.635 -12.229 6.669 14.396 Atomic orbital electron populations 1.69671 1.05045 1.25628 1.57470 1.24737 0.95518 0.97642 1.02876 0.86197 0.78626 0.83847 0.77529 1.21740 1.21799 1.20789 1.19207 0.91023 0.84048 1.43021 0.91171 1.42341 1.05989 0.99688 1.89563 1.20917 0.93034 0.85142 0.98911 1.20793 0.90159 0.92688 0.90012 0.89554 1.45866 1.14199 1.54359 1.20561 1.19200 0.81444 0.77940 0.86615 1.90584 1.76408 1.42412 1.33404 1.22380 0.99556 0.95417 1.00241 1.23054 1.00575 0.95451 0.97069 1.23323 0.88935 1.00818 1.01815 0.86519 1.22007 0.97600 0.93467 1.00284 1.22655 0.94195 0.96554 1.02435 1.21959 0.97718 0.92668 1.00332 1.22655 1.01440 0.91520 1.02562 1.22893 1.01990 1.03228 0.92806 1.23255 1.00669 0.97481 1.00811 0.93526 0.77996 0.95762 0.94752 0.76067 0.88300 0.88251 0.91161 0.91392 0.90829 0.91125 0.91084 0.89564 0.87932 0.88788 0.89243 0.89974 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.03 5.43 -59.91 -0.33 -18.36 16 10 C 0.15 2.92 5.80 -4.04 -0.02 2.90 16 11 C 0.17 2.92 2.43 -67.93 -0.17 2.75 16 12 H 0.09 1.72 7.33 -51.93 -0.38 1.33 16 13 N -0.70 -11.62 4.33 -53.81 -0.23 -11.85 16 14 C 0.56 9.48 6.75 -10.99 -0.07 9.41 16 15 O -0.55 -10.68 13.82 5.55 0.08 -10.60 16 16 C -0.17 -2.41 2.66 -154.55 -0.41 -2.82 16 17 C -0.12 -1.40 9.87 -26.73 -0.26 -1.66 16 18 C -0.13 -1.63 6.55 -89.50 -0.59 -2.21 16 19 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 20 C -0.10 -1.05 6.62 -25.07 -0.17 -1.22 16 21 C -0.12 -1.54 6.91 -24.74 -0.17 -1.71 16 22 C -0.09 -1.22 6.20 -25.07 -0.16 -1.37 16 23 C -0.16 -2.38 5.36 -90.62 -0.49 -2.87 16 24 C -0.17 -2.34 10.18 -26.69 -0.27 -2.61 16 25 C -0.19 -2.63 9.74 -26.69 -0.26 -2.89 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.39 10.16 7.33 -40.82 -0.30 9.86 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.40 6.50 8.18 -40.82 -0.33 6.16 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.41 7.66 -51.93 -0.40 1.02 16 39 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 40 H 0.09 1.35 8.05 -51.93 -0.42 0.94 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.12 1.92 5.02 -51.93 -0.26 1.66 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -30.40 347.60 -9.95 -40.36 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -7.13 Total: 16.46 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.28 Total: -11.50 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.17 Total: -57.05 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.40 -9.95 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498795104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.905 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds