Wall clock time and date at job start Tue Mar 31 2020 00:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99701 * 2 1 4 4 H 1.48495 * 109.47407 * 269.99769 * 3 2 1 5 5 H 1.48502 * 109.47301 * 30.00327 * 3 2 1 6 6 H 1.48502 * 109.47206 * 149.99676 * 3 2 1 7 7 C 1.38806 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99309 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00670 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00340 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46930 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47011 * 64.99891 * 11 10 9 13 13 N 1.46499 * 109.47122 * 304.99782 * 11 10 9 14 14 C 1.34776 * 120.00281 * 155.00466 * 13 11 10 15 15 O 1.21285 * 119.99681 * 359.97438 * 14 13 11 16 16 C 1.50693 * 120.00174 * 180.02562 * 14 13 11 17 17 C 1.52998 * 119.75435 * 250.72149 * 16 14 13 18 18 C 1.53003 * 60.37923 * 248.88054 * 17 16 14 19 19 H 1.08992 * 119.75707 * 111.12574 * 18 17 16 20 20 C 1.54266 * 118.19656 * 266.38479 * 18 17 16 21 21 C 1.54887 * 104.19888 * 87.78673 * 20 18 17 22 22 C 1.54266 * 117.41576 * 46.17653 * 16 14 13 23 23 C 1.52996 * 109.46743 * 184.99956 * 11 10 9 24 24 C 1.53001 * 117.49975 * 248.74554 * 23 11 10 25 25 C 1.53004 * 117.49682 * 180.08508 * 23 11 10 26 26 H 0.97003 * 119.99768 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99513 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46968 * 59.99815 * 10 9 7 29 29 H 1.09004 * 109.46768 * 300.00198 * 10 9 7 30 30 H 0.97001 * 119.99777 * 335.00459 * 13 11 10 31 31 H 1.09004 * 117.46267 * 141.28492 * 17 16 14 32 32 H 1.08997 * 117.46171 * 356.47247 * 17 16 14 33 33 H 1.09001 * 110.48620 * 206.46880 * 20 18 17 34 34 H 1.09004 * 110.48798 * 329.10714 * 20 18 17 35 35 H 1.09003 * 110.75327 * 80.36922 * 21 20 18 36 36 H 1.08997 * 110.75758 * 203.73836 * 21 20 18 37 37 H 1.08997 * 110.48797 * 235.04852 * 22 16 14 38 38 H 1.08998 * 110.48595 * 357.55417 * 22 16 14 39 39 H 1.09003 * 115.55087 * 34.41855 * 23 11 10 40 40 H 1.08997 * 117.49943 * 359.97438 * 24 23 11 41 41 H 1.08992 * 117.50108 * 145.02383 * 24 23 11 42 42 H 1.09005 * 117.49730 * 214.97891 * 25 23 11 43 43 H 1.08995 * 117.49766 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.4981 -4.8134 -0.9327 13 7 0.1440 -4.6763 1.1299 14 6 -1.0804 -5.2372 1.0781 15 8 -1.4208 -5.8602 0.0948 16 6 -2.0268 -5.0892 2.2414 17 6 -2.3451 -6.3005 3.1202 18 6 -3.4316 -5.7167 2.2148 19 1 -3.7818 -6.2860 1.3539 20 6 -4.3935 -4.6693 2.8127 21 6 -3.6673 -3.3186 2.5952 22 6 -2.1842 -3.6824 2.8545 23 6 1.8247 -6.1411 0.1245 24 6 1.8347 -7.0691 -1.0919 25 6 1.0021 -7.4311 0.1405 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6849 -3.7145 0.8894 29 1 2.6849 -3.7144 -0.8906 30 1 0.4162 -4.1777 1.9162 31 1 -2.4407 -6.1321 4.1929 32 1 -1.9119 -7.2583 2.8320 33 1 -5.3461 -4.6799 2.2830 34 1 -4.5453 -4.8539 3.8762 35 1 -3.8054 -2.9660 1.5730 36 1 -4.0135 -2.5740 3.3119 37 1 -1.9791 -3.7075 3.9247 38 1 -1.5228 -2.9732 2.3569 39 1 2.7233 -6.1095 0.7408 40 1 1.2989 -6.7383 -1.9816 41 1 2.7396 -7.6482 -1.2757 42 1 1.3598 -8.2483 0.7670 43 1 -0.0810 -7.3383 0.0619 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498795104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:50 Heat of formation + Delta-G solvation = 0.607584 kcal Electronic energy + Delta-G solvation = -22465.193756 eV Core-core repulsion = 19318.008945 eV Total energy + Delta-G solvation = -3147.184811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.62614 -39.81858 -38.04454 -36.63314 -34.97108 -33.00805 -32.55660 -30.17789 -28.88534 -26.00821 -24.52930 -23.31358 -23.12082 -22.96776 -21.46798 -21.16522 -20.21066 -19.17562 -18.03326 -17.47280 -16.74316 -16.63634 -15.95042 -15.88712 -15.68018 -15.14294 -14.81391 -14.60698 -14.30612 -14.07689 -13.94248 -13.72989 -13.19972 -12.81297 -12.78540 -12.69565 -12.50994 -12.27435 -12.09015 -12.03035 -11.98384 -11.86267 -11.85258 -11.36704 -11.22820 -11.09927 -10.99104 -10.61022 -10.56131 -9.93176 -9.02491 -7.94188 -5.24420 1.47816 1.49319 1.56860 1.57685 2.14688 2.55307 2.66226 2.99798 3.39508 3.50624 3.55851 3.65258 3.77281 3.95600 3.97842 4.10486 4.15286 4.28042 4.32631 4.42765 4.44890 4.51027 4.61569 4.65423 4.76928 4.79155 4.82535 4.88288 4.97748 5.01409 5.02465 5.09610 5.16352 5.22979 5.27218 5.30159 5.36175 5.47137 5.49521 5.59792 6.25524 6.62562 7.30759 7.32994 8.04993 8.30034 9.28460 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.006201 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.866727 B = 4514.290981 C = 6336.778612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.053 0.947 13 N -0.698 5.698 14 C 0.555 3.445 15 O -0.582 6.582 16 C -0.195 4.195 17 C -0.095 4.095 18 C -0.134 4.134 19 H 0.101 0.899 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.084 4.084 23 C -0.165 4.165 24 C -0.165 4.165 25 C -0.180 4.180 26 H 0.250 0.750 27 H 0.373 0.627 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.407 0.593 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -14.245 9.010 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.073 3.927 12 H 0.071 0.929 13 N -0.347 5.347 14 C 0.343 3.657 15 O -0.463 6.463 16 C -0.198 4.198 17 C -0.132 4.132 18 C -0.153 4.153 19 H 0.120 0.880 20 C -0.123 4.123 21 C -0.162 4.162 22 C -0.121 4.121 23 C -0.185 4.185 24 C -0.202 4.202 25 C -0.217 4.217 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.242 0.758 31 H 0.147 0.853 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.205 -14.547 8.306 17.055 hybrid contribution 0.239 1.501 -0.387 1.568 sum -2.966 -13.046 7.919 15.547 Atomic orbital electron populations 1.69840 1.06580 1.25938 1.59227 1.25548 0.96333 1.00997 1.03555 0.85147 0.77817 0.79561 0.77234 1.21845 1.22253 1.19187 1.19615 0.91557 0.85069 1.41476 0.90367 1.42504 1.05589 1.00881 1.89530 1.21034 0.93333 0.83941 0.99339 1.20548 0.89589 0.93518 0.89062 0.92873 1.45848 1.14328 1.54280 1.20237 1.19770 0.81618 0.77146 0.87154 1.90565 1.76962 1.43927 1.34872 1.22367 1.00059 0.96794 1.00587 1.23188 0.97984 0.93908 0.98139 1.23436 0.88669 1.01030 1.02121 0.88048 1.21985 0.97059 0.91283 1.01954 1.22665 0.94142 0.98228 1.01134 1.21903 0.97435 0.91541 1.01265 1.22565 1.01848 0.90061 1.03990 1.22979 1.02729 1.02651 0.91886 1.23192 0.99301 0.97674 1.01558 0.94131 0.79448 0.94145 0.94650 0.75780 0.85295 0.88021 0.90444 0.88606 0.93841 0.89487 0.88569 0.93326 0.85996 0.90288 0.86435 0.87559 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.77 13.06 21.65 0.28 -58.48 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.25 -13.50 9.99 84.03 0.84 -12.66 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.37 5.43 -343.44 -1.87 -39.23 16 10 C 0.15 5.94 5.80 86.38 0.50 6.44 16 11 C 0.18 6.29 2.43 44.99 0.11 6.40 16 12 H 0.05 2.23 7.33 -2.39 -0.02 2.22 16 13 N -0.70 -23.76 4.33 -442.55 -1.92 -25.68 16 14 C 0.55 19.33 6.75 87.65 0.59 19.92 16 15 O -0.58 -23.69 13.82 -3.04 -0.04 -23.73 16 16 C -0.20 -5.37 2.66 -52.21 -0.14 -5.51 16 17 C -0.10 -1.91 9.87 30.59 0.30 -1.61 16 18 C -0.13 -3.20 6.55 -10.07 -0.07 -3.27 16 19 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 20 C -0.09 -1.71 6.62 31.67 0.21 -1.50 16 21 C -0.12 -3.12 6.91 31.88 0.22 -2.90 16 22 C -0.08 -2.27 6.20 31.67 0.20 -2.07 16 23 C -0.17 -4.66 5.36 -10.79 -0.06 -4.72 16 24 C -0.16 -4.29 10.18 30.62 0.31 -3.98 16 25 C -0.18 -4.91 9.74 30.62 0.30 -4.61 16 26 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.37 20.51 7.33 -92.70 -0.68 19.83 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.41 13.34 8.18 -92.71 -0.76 12.58 16 31 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.67 7.66 -2.39 -0.02 1.65 16 39 H 0.12 3.01 8.11 -2.39 -0.02 2.99 16 40 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 41 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.11 2.37 8.14 -2.38 -0.02 2.36 16 43 H 0.09 3.04 5.02 -2.39 -0.01 3.03 16 Total: -1.00 -67.24 347.60 1.84 -65.40 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: -0.43 Total: 47.63 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 3.78 Total: -13.67 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -3.50 Total: -123.39 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.04 Total: -23.73 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -67.24 1.84 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498795104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.012 kcal (2) G-P(sol) polarization free energy of solvation -67.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds