Wall clock time and date at job start Tue Mar 31 2020 00:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46584 * 294.99308 * 11 10 9 13 13 N 1.46500 * 109.47507 * 54.99775 * 11 10 9 14 14 C 1.34772 * 119.99996 * 205.00217 * 13 11 10 15 15 O 1.21281 * 120.00096 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00053 * 179.97438 * 14 13 11 17 17 C 1.52999 * 119.29787 * 250.23007 * 16 14 13 18 18 C 1.53000 * 60.37802 * 248.69181 * 17 16 14 19 19 H 1.09003 * 119.30001 * 111.30607 * 18 17 16 20 20 C 1.54264 * 118.20109 * 266.38517 * 18 17 16 21 21 C 1.54882 * 104.19740 * 87.78943 * 20 18 17 22 22 C 1.54263 * 117.40895 * 44.57269 * 16 14 13 23 23 C 1.53004 * 109.46748 * 175.00140 * 11 10 9 24 24 C 1.52996 * 117.49567 * 248.61438 * 23 11 10 25 25 C 1.52990 * 60.00087 * 252.51394 * 24 23 11 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 0.96996 * 119.99542 * 24.99765 * 13 11 10 31 31 H 1.08991 * 117.46143 * 356.28845 * 17 16 14 32 32 H 1.08996 * 117.45747 * 141.09711 * 17 16 14 33 33 H 1.09004 * 110.48883 * 206.46742 * 20 18 17 34 34 H 1.09004 * 110.48653 * 328.97492 * 20 18 17 35 35 H 1.09004 * 110.75921 * 80.37183 * 21 20 18 36 36 H 1.09001 * 110.75773 * 203.74074 * 21 20 18 37 37 H 1.09000 * 110.48958 * 235.04491 * 22 16 14 38 38 H 1.08998 * 110.49042 * 357.69305 * 22 16 14 39 39 H 1.09001 * 115.55186 * 34.32837 * 23 11 10 40 40 H 1.09008 * 117.49949 * 0.02562 * 24 23 11 41 41 H 1.09001 * 117.49597 * 145.01798 * 24 23 11 42 42 H 1.08999 * 117.50061 * 252.50961 * 25 24 23 43 43 H 1.09000 * 117.50183 * 107.49096 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.4972 -4.8186 0.9111 13 7 0.1445 -4.6698 -1.1511 14 6 -1.0800 -5.2308 -1.1031 15 8 -1.4208 -5.8601 -0.1240 16 6 -2.0257 -5.0762 -2.2662 17 6 -3.2661 -4.1940 -2.1105 18 6 -3.4280 -5.7093 -2.2469 19 1 -3.7771 -6.2876 -1.3913 20 6 -3.6675 -6.2931 -3.6545 21 6 -2.2431 -6.5245 -4.2171 22 6 -1.4489 -5.2796 -3.6824 23 6 1.8245 -6.1404 -0.1528 24 6 1.6644 -6.9196 -1.4597 25 6 1.0018 -7.4301 -0.1788 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 0.4172 -4.1668 -1.9343 31 1 -3.4507 -3.7550 -1.1301 32 1 -3.5555 -3.5790 -2.9625 33 1 -4.2097 -7.2365 -3.5892 34 1 -4.2139 -5.5823 -4.2745 35 1 -1.8196 -7.4504 -3.8279 36 1 -2.2547 -6.5321 -5.3070 37 1 -1.6485 -4.4071 -4.3046 38 1 -0.3782 -5.4775 -3.6335 39 1 2.7974 -6.1739 0.3376 40 1 1.0174 -6.4911 -2.2252 41 1 2.5323 -7.4658 -1.8296 42 1 1.4335 -8.3121 0.2943 43 1 -0.0815 -7.3376 -0.1012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498795106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:54 Heat of formation + Delta-G solvation = 23.249141 kcal Electronic energy + Delta-G solvation = -22573.783538 eV Core-core repulsion = 19427.580538 eV Total energy + Delta-G solvation = -3146.203000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52885 -38.72613 -36.68272 -34.87390 -33.22162 -31.56180 -31.17643 -28.87693 -27.69166 -24.16969 -23.31491 -22.24142 -22.13240 -21.45527 -20.45532 -19.60492 -18.99596 -17.30607 -16.87792 -15.98430 -15.81544 -15.03178 -14.92573 -14.40016 -13.98099 -13.54913 -13.31884 -13.24012 -13.13545 -12.99434 -12.81207 -12.05681 -11.80292 -11.59487 -11.37369 -11.30667 -11.14024 -11.03531 -11.00316 -10.88640 -10.82523 -10.30495 -10.20529 -10.06786 -9.79050 -9.66908 -9.55208 -9.32810 -8.91444 -8.57641 -6.96089 -5.78297 -3.07921 2.82138 3.40968 3.43025 3.47462 3.49174 3.74819 4.09510 4.42696 4.55781 4.62630 4.73749 4.92090 5.02559 5.16105 5.22356 5.23922 5.28564 5.37258 5.48751 5.54213 5.59772 5.63221 5.73297 5.76475 5.81907 5.85307 5.90755 5.97635 6.02984 6.05721 6.09529 6.18885 6.26168 6.32770 6.35779 6.51500 6.55850 6.71536 6.99118 7.67740 7.93526 8.39450 8.61207 9.51393 10.07361 10.43087 11.44006 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.005410 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.483365 B = 5174.235204 C = 6292.813920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.089 0.911 13 N -0.702 5.702 14 C 0.559 3.441 15 O -0.546 6.546 16 C -0.175 4.175 17 C -0.119 4.119 18 C -0.131 4.131 19 H 0.117 0.883 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.177 4.177 25 C -0.187 4.187 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.026 0.974 29 H 0.034 0.966 30 H 0.405 0.595 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -14.296 -8.432 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.107 0.893 13 N -0.352 5.352 14 C 0.346 3.654 15 O -0.424 6.424 16 C -0.179 4.179 17 C -0.156 4.156 18 C -0.150 4.150 19 H 0.135 0.865 20 C -0.133 4.133 21 C -0.158 4.158 22 C -0.125 4.125 23 C -0.180 4.180 24 C -0.215 4.215 25 C -0.224 4.224 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.240 0.760 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.754 -14.613 -7.713 16.945 hybrid contribution 0.503 1.271 -0.243 1.389 sum -3.250 -13.342 -7.956 15.870 Atomic orbital electron populations 1.69670 1.05096 1.25637 1.57475 1.24740 0.95499 0.97662 1.02870 0.86194 0.78675 0.83847 0.77472 1.21742 1.21793 1.20764 1.19212 0.91019 0.84065 1.43021 0.91161 1.42342 1.06003 0.99693 1.89543 1.20908 0.93053 0.85160 0.98884 1.20746 0.90203 0.92742 0.90010 0.89257 1.45891 1.14417 1.53965 1.20950 1.19240 0.81487 0.78041 0.86633 1.90594 1.76208 1.41795 1.33850 1.22333 0.90087 1.10156 0.95275 1.23105 0.96119 0.92381 1.04029 1.23340 0.96955 0.95654 0.99040 0.86486 1.21962 0.96962 1.00607 0.93771 1.23020 0.94763 0.98095 0.99955 1.22325 0.99531 0.98453 0.92143 1.22702 1.00745 0.92625 1.01956 1.22884 1.02888 1.04035 0.91659 1.23318 1.01614 0.96665 1.00778 0.93520 0.77981 0.95659 0.94876 0.75983 0.87683 0.88117 0.91129 0.91165 0.91256 0.91270 0.90543 0.90850 0.87338 0.88996 0.89599 0.89845 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.14 5.43 -59.90 -0.33 -18.47 16 10 C 0.15 2.92 5.80 -4.04 -0.02 2.89 16 11 C 0.17 2.90 2.59 -67.93 -0.18 2.73 16 12 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 13 N -0.70 -11.51 2.88 -53.80 -0.15 -11.66 16 14 C 0.56 9.34 6.25 -10.99 -0.07 9.27 16 15 O -0.55 -10.57 13.81 5.56 0.08 -10.50 16 16 C -0.18 -2.41 2.63 -154.55 -0.41 -2.82 16 17 C -0.12 -1.58 9.85 -26.73 -0.26 -1.84 16 18 C -0.13 -1.61 6.54 -89.50 -0.59 -2.20 16 19 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 20 C -0.10 -0.92 6.63 -25.08 -0.17 -1.08 16 21 C -0.12 -1.15 6.96 -23.54 -0.16 -1.31 16 22 C -0.09 -0.97 6.34 -23.88 -0.15 -1.12 16 23 C -0.16 -2.35 5.71 -90.62 -0.52 -2.87 16 24 C -0.18 -2.34 9.73 -26.74 -0.26 -2.60 16 25 C -0.19 -2.68 9.82 -26.74 -0.26 -2.95 16 26 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.39 10.25 7.33 -40.82 -0.30 9.95 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.40 6.49 8.07 -40.82 -0.33 6.16 16 31 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.81 6.91 -51.93 -0.36 0.45 16 39 H 0.11 1.47 8.11 -51.93 -0.42 1.05 16 40 H 0.09 1.23 6.01 -51.92 -0.31 0.91 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.12 1.95 5.02 -51.93 -0.26 1.69 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -30.76 343.30 -9.82 -40.58 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -6.99 Total: 15.98 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -3.29 Total: -11.14 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.24 Total: -57.27 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.76 -9.82 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498795106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.825 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds