Wall clock time and date at job start Tue Mar 31 2020 00:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46584 * 294.99308 * 11 10 9 13 13 N 1.46500 * 109.47507 * 54.99775 * 11 10 9 14 14 C 1.34772 * 119.99996 * 205.00217 * 13 11 10 15 15 O 1.21281 * 120.00096 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00053 * 179.97438 * 14 13 11 17 17 C 1.52999 * 119.29787 * 250.23007 * 16 14 13 18 18 C 1.53000 * 60.37802 * 248.69181 * 17 16 14 19 19 H 1.09003 * 119.30001 * 111.30607 * 18 17 16 20 20 C 1.54264 * 118.20109 * 266.38517 * 18 17 16 21 21 C 1.54882 * 104.19740 * 87.78943 * 20 18 17 22 22 C 1.54263 * 117.40895 * 44.57269 * 16 14 13 23 23 C 1.53004 * 109.46748 * 175.00140 * 11 10 9 24 24 C 1.52996 * 117.49567 * 248.61438 * 23 11 10 25 25 C 1.52990 * 60.00087 * 252.51394 * 24 23 11 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 0.96996 * 119.99542 * 24.99765 * 13 11 10 31 31 H 1.08991 * 117.46143 * 356.28845 * 17 16 14 32 32 H 1.08996 * 117.45747 * 141.09711 * 17 16 14 33 33 H 1.09004 * 110.48883 * 206.46742 * 20 18 17 34 34 H 1.09004 * 110.48653 * 328.97492 * 20 18 17 35 35 H 1.09004 * 110.75921 * 80.37183 * 21 20 18 36 36 H 1.09001 * 110.75773 * 203.74074 * 21 20 18 37 37 H 1.09000 * 110.48958 * 235.04491 * 22 16 14 38 38 H 1.08998 * 110.49042 * 357.69305 * 22 16 14 39 39 H 1.09001 * 115.55186 * 34.32837 * 23 11 10 40 40 H 1.09008 * 117.49949 * 0.02562 * 24 23 11 41 41 H 1.09001 * 117.49597 * 145.01798 * 24 23 11 42 42 H 1.08999 * 117.50061 * 252.50961 * 25 24 23 43 43 H 1.09000 * 117.50183 * 107.49096 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.4972 -4.8186 0.9111 13 7 0.1445 -4.6698 -1.1511 14 6 -1.0800 -5.2308 -1.1031 15 8 -1.4208 -5.8601 -0.1240 16 6 -2.0257 -5.0762 -2.2662 17 6 -3.2661 -4.1940 -2.1105 18 6 -3.4280 -5.7093 -2.2469 19 1 -3.7771 -6.2876 -1.3913 20 6 -3.6675 -6.2931 -3.6545 21 6 -2.2431 -6.5245 -4.2171 22 6 -1.4489 -5.2796 -3.6824 23 6 1.8245 -6.1404 -0.1528 24 6 1.6644 -6.9196 -1.4597 25 6 1.0018 -7.4301 -0.1788 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 0.4172 -4.1668 -1.9343 31 1 -3.4507 -3.7550 -1.1301 32 1 -3.5555 -3.5790 -2.9625 33 1 -4.2097 -7.2365 -3.5892 34 1 -4.2139 -5.5823 -4.2745 35 1 -1.8196 -7.4504 -3.8279 36 1 -2.2547 -6.5321 -5.3070 37 1 -1.6485 -4.4071 -4.3046 38 1 -0.3782 -5.4775 -3.6335 39 1 2.7974 -6.1739 0.3376 40 1 1.0174 -6.4911 -2.2252 41 1 2.5323 -7.4658 -1.8296 42 1 1.4335 -8.3121 0.2943 43 1 -0.0815 -7.3376 -0.1012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498795106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:53 Heat of formation + Delta-G solvation = 5.589875 kcal Electronic energy + Delta-G solvation = -22574.549301 eV Core-core repulsion = 19427.580538 eV Total energy + Delta-G solvation = -3146.968763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72928 -39.86506 -37.99461 -36.56216 -34.80004 -33.05406 -32.44446 -30.27411 -28.92294 -26.02778 -24.54046 -23.46687 -23.19192 -22.91974 -21.40931 -20.87396 -20.23184 -19.18478 -18.09356 -17.29279 -17.20878 -16.67836 -15.93864 -15.86827 -15.31515 -15.11415 -14.96390 -14.51665 -14.34005 -14.12880 -13.94424 -13.59943 -13.13620 -12.88031 -12.82627 -12.71213 -12.67008 -12.35917 -12.09939 -11.98687 -11.96763 -11.86149 -11.83857 -11.33401 -11.22329 -10.99218 -10.84974 -10.66997 -10.58775 -9.95240 -9.02220 -7.94396 -5.24384 1.48257 1.49680 1.53764 1.58132 2.15771 2.55539 2.67935 2.94234 3.39752 3.48722 3.59390 3.67719 3.77054 3.88479 3.99426 4.08482 4.17065 4.24040 4.39873 4.42147 4.47778 4.50632 4.61184 4.63905 4.73997 4.79673 4.81897 4.87210 4.97627 4.99986 5.06166 5.13941 5.14815 5.19368 5.27984 5.29195 5.38083 5.47771 5.49791 5.59453 6.25725 6.59468 7.28098 7.33163 8.05652 8.30344 9.28623 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.005410 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.483365 B = 5174.235204 C = 6292.813920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.177 3.823 12 H 0.056 0.944 13 N -0.698 5.698 14 C 0.553 3.447 15 O -0.579 6.579 16 C -0.190 4.190 17 C -0.127 4.127 18 C -0.122 4.122 19 H 0.101 0.899 20 C -0.089 4.089 21 C -0.114 4.114 22 C -0.084 4.084 23 C -0.169 4.169 24 C -0.159 4.159 25 C -0.190 4.190 26 H 0.250 0.750 27 H 0.373 0.627 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.407 0.593 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -15.164 -10.411 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.072 3.928 12 H 0.074 0.926 13 N -0.348 5.348 14 C 0.342 3.658 15 O -0.460 6.460 16 C -0.193 4.193 17 C -0.164 4.164 18 C -0.140 4.140 19 H 0.119 0.881 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.188 4.188 24 C -0.196 4.196 25 C -0.227 4.227 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.243 0.757 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.542 -15.510 -9.703 18.471 hybrid contribution 0.144 1.490 0.447 1.563 sum -2.399 -14.019 -9.257 16.970 Atomic orbital electron populations 1.69837 1.06668 1.25978 1.59337 1.25552 0.96303 1.01047 1.03562 0.85138 0.77630 0.79458 0.77482 1.21150 1.22585 1.19495 1.19629 0.91576 0.85089 1.41394 0.90325 1.42510 1.05602 1.00910 1.89521 1.21022 0.93328 0.83881 0.99353 1.20487 0.89649 0.93542 0.89105 0.92578 1.45847 1.14466 1.53846 1.20597 1.19796 0.81667 0.77258 0.87107 1.90575 1.76763 1.43259 1.35413 1.22462 0.90085 1.11087 0.95642 1.23120 0.96330 0.93477 1.03482 1.23439 0.95449 0.94642 1.00505 0.88088 1.22011 0.97548 1.01434 0.91673 1.23008 0.93956 0.96846 1.01325 1.22387 0.99696 0.99792 0.90287 1.22624 1.01058 0.91131 1.04003 1.22967 1.03200 1.02656 0.90730 1.23245 1.00194 0.97038 1.02217 0.94113 0.79450 0.94161 0.94562 0.75675 0.90270 0.86146 0.89753 0.89594 0.91670 0.88816 0.89643 0.90843 0.85726 0.89267 0.87037 0.87957 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.25 -13.47 9.99 84.04 0.84 -12.63 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -37.27 5.43 -343.44 -1.87 -39.13 16 10 C 0.15 5.91 5.80 86.38 0.50 6.41 16 11 C 0.18 6.22 2.59 44.99 0.12 6.34 16 12 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 13 N -0.70 -23.27 2.88 -442.52 -1.27 -24.55 16 14 C 0.55 19.08 6.25 87.66 0.55 19.63 16 15 O -0.58 -23.59 13.81 -3.03 -0.04 -23.63 16 16 C -0.19 -5.22 2.63 -52.21 -0.14 -5.36 16 17 C -0.13 -3.42 9.85 30.59 0.30 -3.12 16 18 C -0.12 -2.96 6.54 -10.07 -0.07 -3.02 16 19 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 20 C -0.09 -1.50 6.63 31.67 0.21 -1.29 16 21 C -0.11 -1.85 6.96 32.66 0.23 -1.62 16 22 C -0.08 -1.73 6.34 32.44 0.21 -1.53 16 23 C -0.17 -4.75 5.71 -10.79 -0.06 -4.82 16 24 C -0.16 -3.83 9.73 30.59 0.30 -3.54 16 25 C -0.19 -5.27 9.82 30.59 0.30 -4.97 16 26 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 27 H 0.37 20.45 7.33 -92.71 -0.68 19.77 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.41 13.11 8.07 -92.71 -0.75 12.36 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.50 6.91 -2.39 -0.02 1.48 16 39 H 0.12 3.12 8.11 -2.39 -0.02 3.10 16 40 H 0.09 2.22 6.01 -2.38 -0.01 2.21 16 41 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.09 3.07 5.02 -2.39 -0.01 3.06 16 Total: -1.00 -67.16 343.30 2.46 -64.69 By element: Atomic # 1 Polarization: 47.26 SS G_CDS: -0.41 Total: 46.85 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 3.75 Total: -13.15 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -2.86 Total: -122.47 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.04 Total: -23.63 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -67.16 2.46 -64.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498795106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.283 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds