Wall clock time and date at job start Tue Mar 31 2020 00:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48492 * 109.46944 * 274.80618 * 3 2 1 5 5 H 1.48502 * 109.47213 * 34.80920 * 3 2 1 6 6 H 1.48505 * 109.46691 * 154.80806 * 3 2 1 7 7 C 1.38814 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99311 * 187.59482 * 7 2 1 9 9 N 1.36927 * 120.00417 * 7.59174 * 7 2 1 10 10 C 1.47816 * 134.58127 * 7.07051 * 9 7 2 11 11 C 1.53951 * 86.16220 * 155.42331 * 10 9 7 12 12 C 1.47582 * 134.49604 * 187.02677 * 9 7 2 13 13 H 1.08997 * 113.77288 * 90.21649 * 12 9 7 14 14 C 1.53004 * 113.76461 * 318.92691 * 12 9 7 15 15 N 1.46509 * 109.46835 * 76.34907 * 14 12 9 16 16 C 1.34776 * 119.99738 * 179.97438 * 15 14 12 17 17 O 1.21275 * 120.00100 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99783 * 179.97438 * 16 15 14 19 19 C 1.52996 * 109.47268 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.35872 * 55.27765 * 19 18 16 21 21 C 1.50072 * 109.35762 * 295.68998 * 19 18 16 22 22 C 1.29432 * 124.07634 * 222.65826 * 21 19 18 23 23 C 1.50067 * 124.08070 * 0.47183 * 22 21 19 24 24 C 1.53024 * 110.14259 * 342.86884 * 23 22 21 25 25 C 1.53022 * 109.35911 * 175.00633 * 19 18 16 26 26 H 0.97009 * 119.99602 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.83498 * 41.09890 * 10 9 7 28 28 H 1.09001 * 113.77242 * 269.74385 * 10 9 7 29 29 H 1.09000 * 113.74322 * 269.17177 * 11 10 9 30 30 H 1.08995 * 113.74290 * 137.85767 * 11 10 9 31 31 H 1.08999 * 109.46881 * 196.34343 * 14 12 9 32 32 H 1.08996 * 109.47499 * 316.34768 * 14 12 9 33 33 H 0.96996 * 119.99563 * 359.97438 * 15 14 12 34 34 H 1.09001 * 109.47548 * 300.00502 * 18 16 15 35 35 H 1.09013 * 109.46714 * 60.00059 * 18 16 15 36 36 H 1.08006 * 117.95823 * 42.64179 * 21 19 18 37 37 H 1.08002 * 117.96453 * 180.49353 * 22 21 19 38 38 H 1.08998 * 109.36227 * 222.66427 * 23 22 21 39 39 H 1.09004 * 109.24859 * 103.00118 * 23 22 21 40 40 H 1.09000 * 109.64533 * 289.74867 * 24 23 22 41 41 H 1.09005 * 109.64323 * 169.11380 * 24 23 22 42 42 H 1.09010 * 109.63721 * 289.32614 * 25 19 18 43 43 H 1.08995 * 109.64710 * 49.95396 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3961 2.1050 -1.3951 5 1 1.5023 2.6212 0.7992 6 1 3.5949 1.4128 0.5960 7 6 2.0102 -1.2022 -0.0005 8 1 3.0831 -1.2064 0.1231 9 7 1.3345 -2.3828 -0.1577 10 6 -0.0635 -2.7439 -0.4741 11 6 0.5085 -4.0707 -1.0058 12 6 1.7102 -3.8079 -0.0800 13 1 1.6000 -4.2376 0.9156 14 6 3.0630 -4.1247 -0.7207 15 7 4.1401 -3.6869 0.1708 16 6 5.4267 -3.8657 -0.1884 17 8 5.6929 -4.3893 -1.2494 18 6 6.5345 -3.4149 0.7284 19 6 7.8873 -3.7329 0.0884 20 1 7.9344 -3.2790 -0.9015 21 6 8.0387 -5.2203 -0.0418 22 6 9.1281 -5.8648 0.2285 23 6 10.3892 -5.2161 0.7194 24 6 10.3466 -3.7104 0.4499 25 6 9.0078 -3.1636 0.9613 26 1 -0.4850 0.8402 -0.0004 27 1 -0.5159 -2.1203 -1.2451 28 1 -0.6971 -2.8598 0.4053 29 1 0.7583 -4.0471 -2.0665 30 1 -0.0784 -4.9453 -0.7254 31 1 3.1434 -5.1988 -0.8874 32 1 3.1451 -3.6019 -1.6736 33 1 3.9270 -3.2685 1.0196 34 1 6.4543 -2.3406 0.8945 35 1 6.4522 -3.9370 1.6818 36 1 7.1853 -5.7882 -0.3819 37 1 9.1299 -6.9361 0.0918 38 1 11.2444 -5.6516 0.2026 39 1 10.4883 -5.3886 1.7911 40 1 10.4321 -3.5273 -0.6212 41 1 11.1669 -3.2208 0.9750 42 1 9.0070 -2.0755 0.8950 43 1 8.8579 -3.4707 1.9963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499004186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:01 Heat of formation + Delta-G solvation = -7.598043 kcal Electronic energy + Delta-G solvation = -21724.252217 eV Core-core repulsion = 18576.711583 eV Total energy + Delta-G solvation = -3147.540634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.03587 -39.77747 -38.93014 -35.43896 -34.21022 -33.59676 -31.85724 -30.03050 -29.65118 -27.60125 -25.29221 -24.04239 -23.15298 -22.80546 -21.37354 -20.73995 -18.82598 -18.70760 -17.76539 -17.21014 -17.10196 -16.72678 -16.27693 -15.80081 -15.46951 -15.06354 -14.98891 -14.68969 -14.31623 -13.79268 -13.57134 -13.47934 -13.29688 -13.14714 -12.99461 -12.97320 -12.68153 -12.63325 -12.36651 -12.24442 -11.87065 -11.71626 -11.52152 -11.41640 -11.33753 -11.00288 -10.80425 -10.56825 -9.95374 -9.84600 -8.88844 -7.88409 -5.18389 1.44103 1.44608 1.46781 1.53916 1.73614 2.31879 2.49453 3.34057 3.38446 3.71972 3.82942 3.89183 3.98824 4.05289 4.16715 4.29656 4.35566 4.42426 4.51474 4.53477 4.63905 4.71740 4.73030 4.81923 4.83108 4.88312 4.93227 5.04817 5.09153 5.10615 5.12226 5.23515 5.31562 5.44542 5.49226 5.53275 5.58817 5.73850 5.84378 5.95825 6.11364 6.64791 6.95076 7.33307 7.65655 8.61600 9.30169 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.004148 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.775976 B = 6748.517082 C = 7938.964748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.262 1.262 7 C -0.214 4.214 8 H 0.087 0.913 9 N -0.628 5.628 10 C 0.157 3.843 11 C -0.131 4.131 12 C 0.132 3.868 13 H 0.067 0.933 14 C 0.134 3.866 15 N -0.716 5.716 16 C 0.505 3.495 17 O -0.584 6.584 18 C -0.128 4.128 19 C -0.040 4.040 20 H 0.062 0.938 21 C -0.152 4.152 22 C -0.164 4.164 23 C -0.089 4.089 24 C -0.121 4.121 25 C -0.113 4.113 26 H 0.245 0.755 27 H 0.026 0.974 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.408 0.592 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.816 -10.602 4.505 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.795 3.205 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.186 1.186 7 C -0.343 4.343 8 H 0.105 0.895 9 N -0.355 5.355 10 C 0.032 3.968 11 C -0.170 4.170 12 C 0.026 3.974 13 H 0.085 0.915 14 C 0.008 3.992 15 N -0.366 5.366 16 C 0.293 3.707 17 O -0.465 6.465 18 C -0.168 4.168 19 C -0.059 4.059 20 H 0.080 0.920 21 C -0.170 4.170 22 C -0.182 4.182 23 C -0.125 4.125 24 C -0.158 4.158 25 C -0.150 4.150 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.243 0.757 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.033 -10.653 3.794 20.446 hybrid contribution -0.529 1.327 0.090 1.432 sum 16.505 -9.326 3.884 19.351 Atomic orbital electron populations 1.70020 1.06411 1.25267 1.58784 1.25550 0.96351 1.00656 1.03765 0.85233 0.78247 0.80083 0.76896 1.22424 1.22419 1.18645 1.19351 0.91149 0.83216 1.40566 0.89497 1.46548 1.06929 1.00025 1.81972 1.22072 0.87337 0.91671 0.95759 1.23564 0.96354 0.97740 0.99347 1.22644 0.92715 0.84758 0.97316 0.91520 1.21475 0.85946 0.98833 0.92906 1.46039 1.05566 1.61735 1.23299 1.21279 0.84279 0.77847 0.87253 1.90638 1.84112 1.45674 1.26095 1.21754 0.91679 1.04112 0.99215 1.19785 0.93482 0.93522 0.99102 0.91963 1.22094 0.98238 0.96041 1.00655 1.22249 0.95341 0.99766 1.00827 1.20496 0.95292 0.95052 1.01707 1.21623 0.97472 0.95605 1.01111 1.21675 0.93487 1.00498 0.99343 0.94597 0.95530 0.95869 0.90232 0.88763 0.90599 0.94164 0.75683 0.87404 0.86780 0.89761 0.87850 0.90266 0.89750 0.92769 0.89804 0.90776 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.41 11.78 21.65 0.26 -57.15 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.97 45.31 29.56 68.60 2.03 47.34 16 4 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.21 -11.37 10.49 84.04 0.88 -10.49 16 8 H 0.09 4.35 7.61 -2.91 -0.02 4.33 16 9 N -0.63 -30.24 3.57 -690.73 -2.47 -32.70 16 10 C 0.16 7.21 7.32 86.44 0.63 7.84 16 11 C -0.13 -4.51 7.86 31.25 0.25 -4.27 16 12 C 0.13 4.81 4.33 45.10 0.20 5.00 16 13 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.13 4.63 5.54 86.38 0.48 5.11 16 15 N -0.72 -22.87 5.33 -463.05 -2.47 -25.34 16 16 C 0.51 16.00 7.46 87.66 0.65 16.65 16 17 O -0.58 -22.57 14.24 -3.01 -0.04 -22.61 16 18 C -0.13 -2.96 5.14 29.85 0.15 -2.80 16 19 C -0.04 -0.94 2.12 -11.73 -0.02 -0.96 16 20 H 0.06 1.74 7.96 -2.39 -0.02 1.72 16 21 C -0.15 -3.78 8.41 27.05 0.23 -3.55 16 22 C -0.16 -3.34 9.80 27.05 0.27 -3.07 16 23 C -0.09 -1.35 6.12 29.66 0.18 -1.17 16 24 C -0.12 -1.86 6.01 30.74 0.18 -1.68 16 25 C -0.11 -1.92 5.30 30.73 0.16 -1.76 16 26 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 27 H 0.03 1.37 7.71 -2.39 -0.02 1.35 16 28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 2.70 8.10 -2.39 -0.02 2.68 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.41 12.21 8.47 -92.71 -0.79 11.42 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 2.53 6.47 -2.91 -0.02 2.51 16 37 H 0.10 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 41 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -68.65 345.67 2.20 -66.45 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.19 Total: 22.64 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 4.70 Total: 1.38 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -4.68 Total: -115.20 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.65 2.20 -66.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499004186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.855 kcal (2) G-P(sol) polarization free energy of solvation -68.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds