Wall clock time and date at job start Tue Mar 31 2020 00:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48503 * 109.47118 * 240.00110 * 3 2 1 5 5 H 1.48499 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47073 * 120.00014 * 3 2 1 7 7 C 1.38811 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.47581 * 134.49400 * 0.02562 * 9 7 2 11 11 C 1.53943 * 86.11800 * 204.63599 * 10 9 7 12 12 C 1.47581 * 134.49301 * 179.97438 * 9 7 2 13 13 H 1.09000 * 113.87146 * 269.67955 * 12 9 7 14 14 C 1.52998 * 113.76987 * 41.06598 * 12 9 7 15 15 N 1.46507 * 109.46875 * 281.49476 * 14 12 9 16 16 C 1.34773 * 120.00045 * 180.02562 * 15 14 12 17 17 O 1.21286 * 119.99747 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00397 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47578 * 179.97438 * 18 16 15 20 20 H 1.08995 * 109.35942 * 304.72956 * 19 18 16 21 21 C 1.50074 * 109.24169 * 64.38479 * 19 18 16 22 22 C 1.29445 * 124.07514 * 137.27159 * 21 19 18 23 23 C 1.50066 * 124.07462 * 359.52270 * 22 21 19 24 24 C 1.53020 * 110.14929 * 17.13805 * 23 22 21 25 25 C 1.53022 * 109.35928 * 184.99962 * 19 18 16 26 26 H 0.97006 * 119.99912 * 0.02562 * 1 2 3 27 27 H 1.08996 * 113.77439 * 90.32728 * 10 9 7 28 28 H 1.09010 * 113.86544 * 318.94844 * 10 9 7 29 29 H 1.09000 * 113.73818 * 222.04526 * 11 10 9 30 30 H 1.09000 * 113.74120 * 90.73308 * 11 10 9 31 31 H 1.08998 * 109.47047 * 161.49492 * 14 12 9 32 32 H 1.09005 * 109.47187 * 41.48855 * 14 12 9 33 33 H 0.96999 * 119.99576 * 359.97438 * 15 14 12 34 34 H 1.09008 * 109.46730 * 59.99665 * 18 16 15 35 35 H 1.09001 * 109.47414 * 300.00430 * 18 16 15 36 36 H 1.08001 * 117.96056 * 317.28890 * 21 19 18 37 37 H 1.08002 * 117.96033 * 179.81016 * 22 21 19 38 38 H 1.08999 * 109.35552 * 137.34338 * 23 22 21 39 39 H 1.08998 * 109.35877 * 257.06324 * 23 22 21 40 40 H 1.08995 * 109.64347 * 70.24041 * 24 23 22 41 41 H 1.08991 * 109.64580 * 190.66630 * 24 23 22 42 42 H 1.08997 * 109.64061 * 70.81182 * 25 19 18 43 43 H 1.08996 * 109.64212 * 310.18325 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1033 -2.7574 -0.0005 11 6 0.3470 -4.0830 0.6397 12 6 1.7201 -3.8101 -0.0015 13 1 1.8319 -4.2362 -0.9985 14 6 2.9030 -4.1225 0.9173 15 7 4.1498 -3.7189 0.2624 16 6 5.3293 -3.9002 0.8888 17 8 5.3585 -4.3979 1.9945 18 6 6.6119 -3.4857 0.2150 19 6 7.7948 -3.7979 1.1338 20 1 7.6391 -3.3168 2.0994 21 6 7.8918 -5.2829 1.3277 22 6 9.0035 -5.9458 1.3076 23 6 10.3495 -5.3236 1.0772 24 6 10.2753 -3.8109 1.2963 25 6 9.0823 -3.2637 0.5025 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5273 -2.8729 -0.9980 28 1 -0.7184 -2.1399 0.6542 29 1 -0.1592 -4.9596 0.2357 30 1 0.3592 -4.0621 1.7294 31 1 2.9304 -5.1925 1.1231 32 1 2.7905 -3.5752 1.8532 33 1 4.1265 -3.3220 -0.6223 34 1 6.5847 -2.4155 0.0092 35 1 6.7240 -4.0329 -0.7210 36 1 6.9773 -5.8327 1.4942 37 1 8.9590 -7.0139 1.4617 38 1 11.0703 -5.7544 1.7721 39 1 10.6696 -5.5232 0.0546 40 1 10.1371 -3.6007 2.3568 41 1 11.1965 -3.3445 0.9474 42 1 9.0848 -2.1744 0.5415 43 1 9.1478 -3.5963 -0.5334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499004187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:05 Heat of formation + Delta-G solvation = 11.971607 kcal Electronic energy + Delta-G solvation = -21711.753017 eV Core-core repulsion = 18565.060987 eV Total energy + Delta-G solvation = -3146.692030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81449 -38.40308 -37.68355 -34.01140 -32.68309 -32.17437 -31.04349 -28.56471 -27.87534 -26.45380 -23.37216 -22.77663 -22.27936 -21.63354 -20.04079 -19.05464 -17.97358 -17.05281 -16.39224 -16.09002 -15.55172 -15.36960 -14.82481 -14.30762 -14.23123 -13.81166 -13.56453 -13.37209 -12.94646 -12.83111 -12.69263 -12.25513 -12.13331 -11.91558 -11.47100 -11.38352 -11.10287 -11.01382 -10.95102 -10.74318 -10.60474 -10.56577 -10.17625 -9.99082 -9.77174 -9.59300 -9.22528 -8.96820 -8.80519 -8.53603 -6.90319 -5.77217 -3.09726 2.35481 3.00726 3.37015 3.41617 3.43083 3.60207 4.42194 4.61710 4.65655 4.74156 4.99373 5.10611 5.13381 5.25345 5.37546 5.39003 5.42070 5.50105 5.59111 5.62786 5.64145 5.72727 5.78394 5.79473 5.84831 5.92010 6.00286 6.10298 6.26535 6.30290 6.32785 6.40673 6.61935 6.71331 6.75147 6.92085 7.00682 7.23948 7.40699 7.58115 7.94013 7.97663 8.61652 9.03357 9.70293 10.58922 11.39520 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.004115 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.437378 B = 6803.490015 C = 7983.154250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.124 3.876 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.550 6.550 18 C -0.135 4.135 19 C -0.043 4.043 20 H 0.088 0.912 21 C -0.128 4.128 22 C -0.177 4.177 23 C -0.088 4.088 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.019 -9.820 -0.990 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.366 5.366 16 C 0.295 3.705 17 O -0.429 6.429 18 C -0.175 4.175 19 C -0.062 4.062 20 H 0.106 0.894 21 C -0.146 4.146 22 C -0.195 4.195 23 C -0.125 4.125 24 C -0.158 4.158 25 C -0.154 4.154 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.236 0.764 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.029 -9.812 -0.194 17.949 hybrid contribution 0.308 1.128 -0.592 1.311 sum 15.337 -8.684 -0.786 17.642 Atomic orbital electron populations 1.69809 1.04980 1.25367 1.56570 1.24759 0.95616 0.97408 1.02588 0.86274 0.78568 0.83504 0.77861 1.21249 1.21561 1.21145 1.18895 0.90115 0.81946 1.43783 0.90431 1.46062 1.02273 0.98567 1.85954 1.22193 0.87952 0.89625 0.96869 1.23778 0.96223 0.98949 1.00561 1.22505 0.92412 0.87633 0.95621 0.93396 1.21725 0.82541 0.98547 0.97306 1.46019 1.06179 1.63011 1.21375 1.20588 0.85301 0.78495 0.86116 1.90656 1.87504 1.44706 1.20027 1.21709 0.92405 1.03439 0.99973 1.19832 0.93038 0.94078 0.99222 0.89393 1.22238 0.98336 0.95632 0.98352 1.21983 0.94335 0.99376 1.03814 1.20414 0.95481 0.95240 1.01352 1.21591 0.98029 0.95422 1.00723 1.21675 0.93932 1.00266 0.99515 0.93641 0.95620 0.90855 0.92844 0.90522 0.92370 0.91092 0.76404 0.88639 0.89095 0.87039 0.88366 0.91577 0.91348 0.91744 0.91829 0.91501 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.39 55.49 0.63 -26.30 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -5.87 10.51 -15.06 -0.16 -6.02 16 8 H 0.08 1.97 7.80 -52.48 -0.41 1.56 16 9 N -0.60 -14.61 3.57 -170.73 -0.61 -15.22 16 10 C 0.16 3.64 7.51 -2.98 -0.02 3.62 16 11 C -0.16 -2.86 7.86 -25.79 -0.20 -3.06 16 12 C 0.13 2.41 4.33 -66.85 -0.29 2.12 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.23 5.54 -4.04 -0.02 2.21 16 15 N -0.72 -11.81 5.53 -60.29 -0.33 -12.15 16 16 C 0.51 8.22 7.46 -10.99 -0.08 8.14 16 17 O -0.55 -10.58 14.24 5.55 0.08 -10.50 16 18 C -0.14 -1.65 5.14 -27.89 -0.14 -1.80 16 19 C -0.04 -0.52 2.12 -92.06 -0.20 -0.72 16 20 H 0.09 1.22 7.96 -51.93 -0.41 0.80 16 21 C -0.13 -1.62 8.40 -35.90 -0.30 -1.93 16 22 C -0.18 -1.95 9.80 -35.90 -0.35 -2.30 16 23 C -0.09 -0.79 6.11 -28.18 -0.17 -0.97 16 24 C -0.12 -1.08 6.01 -26.51 -0.16 -1.24 16 25 C -0.12 -1.13 5.30 -26.51 -0.14 -1.27 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.87 7.16 -51.92 -0.37 1.50 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.40 6.22 8.47 -40.82 -0.35 5.88 16 34 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.64 6.47 -52.49 -0.34 1.30 16 37 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -31.12 345.32 -9.74 -40.86 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.35 Total: 4.80 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.34 Total: -3.52 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.31 Total: -53.67 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.12 -9.74 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499004187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.830 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds