Wall clock time and date at job start Tue Mar 31 2020 00:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48503 * 109.47118 * 240.00110 * 3 2 1 5 5 H 1.48499 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47073 * 120.00014 * 3 2 1 7 7 C 1.38811 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.47581 * 134.49400 * 0.02562 * 9 7 2 11 11 C 1.53943 * 86.11800 * 204.63599 * 10 9 7 12 12 C 1.47581 * 134.49301 * 179.97438 * 9 7 2 13 13 H 1.09000 * 113.87146 * 269.67955 * 12 9 7 14 14 C 1.52998 * 113.76987 * 41.06598 * 12 9 7 15 15 N 1.46507 * 109.46875 * 281.49476 * 14 12 9 16 16 C 1.34773 * 120.00045 * 180.02562 * 15 14 12 17 17 O 1.21286 * 119.99747 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00397 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47578 * 179.97438 * 18 16 15 20 20 H 1.08995 * 109.35942 * 304.72956 * 19 18 16 21 21 C 1.50074 * 109.24169 * 64.38479 * 19 18 16 22 22 C 1.29445 * 124.07514 * 137.27159 * 21 19 18 23 23 C 1.50066 * 124.07462 * 359.52270 * 22 21 19 24 24 C 1.53020 * 110.14929 * 17.13805 * 23 22 21 25 25 C 1.53022 * 109.35928 * 184.99962 * 19 18 16 26 26 H 0.97006 * 119.99912 * 0.02562 * 1 2 3 27 27 H 1.08996 * 113.77439 * 90.32728 * 10 9 7 28 28 H 1.09010 * 113.86544 * 318.94844 * 10 9 7 29 29 H 1.09000 * 113.73818 * 222.04526 * 11 10 9 30 30 H 1.09000 * 113.74120 * 90.73308 * 11 10 9 31 31 H 1.08998 * 109.47047 * 161.49492 * 14 12 9 32 32 H 1.09005 * 109.47187 * 41.48855 * 14 12 9 33 33 H 0.96999 * 119.99576 * 359.97438 * 15 14 12 34 34 H 1.09008 * 109.46730 * 59.99665 * 18 16 15 35 35 H 1.09001 * 109.47414 * 300.00430 * 18 16 15 36 36 H 1.08001 * 117.96056 * 317.28890 * 21 19 18 37 37 H 1.08002 * 117.96033 * 179.81016 * 22 21 19 38 38 H 1.08999 * 109.35552 * 137.34338 * 23 22 21 39 39 H 1.08998 * 109.35877 * 257.06324 * 23 22 21 40 40 H 1.08995 * 109.64347 * 70.24041 * 24 23 22 41 41 H 1.08991 * 109.64580 * 190.66630 * 24 23 22 42 42 H 1.08997 * 109.64061 * 70.81182 * 25 19 18 43 43 H 1.08996 * 109.64212 * 310.18325 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1033 -2.7574 -0.0005 11 6 0.3470 -4.0830 0.6397 12 6 1.7201 -3.8101 -0.0015 13 1 1.8319 -4.2362 -0.9985 14 6 2.9030 -4.1225 0.9173 15 7 4.1498 -3.7189 0.2624 16 6 5.3293 -3.9002 0.8888 17 8 5.3585 -4.3979 1.9945 18 6 6.6119 -3.4857 0.2150 19 6 7.7948 -3.7979 1.1338 20 1 7.6391 -3.3168 2.0994 21 6 7.8918 -5.2829 1.3277 22 6 9.0035 -5.9458 1.3076 23 6 10.3495 -5.3236 1.0772 24 6 10.2753 -3.8109 1.2963 25 6 9.0823 -3.2637 0.5025 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5273 -2.8729 -0.9980 28 1 -0.7184 -2.1399 0.6542 29 1 -0.1592 -4.9596 0.2357 30 1 0.3592 -4.0621 1.7294 31 1 2.9304 -5.1925 1.1231 32 1 2.7905 -3.5752 1.8532 33 1 4.1265 -3.3220 -0.6223 34 1 6.5847 -2.4155 0.0092 35 1 6.7240 -4.0329 -0.7210 36 1 6.9773 -5.8327 1.4942 37 1 8.9590 -7.0139 1.4617 38 1 11.0703 -5.7544 1.7721 39 1 10.6696 -5.5232 0.0546 40 1 10.1371 -3.6007 2.3568 41 1 11.1965 -3.3445 0.9474 42 1 9.0848 -2.1744 0.5415 43 1 9.1478 -3.5963 -0.5334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499004187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:04 Heat of formation + Delta-G solvation = -6.731738 kcal Electronic energy + Delta-G solvation = -21712.564055 eV Core-core repulsion = 18565.060987 eV Total energy + Delta-G solvation = -3147.503068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.03734 -39.78478 -38.93349 -35.45467 -34.19526 -33.59799 -31.85682 -30.02290 -29.65511 -27.59819 -25.28466 -24.03425 -23.15483 -22.80565 -21.38903 -20.72636 -18.82832 -18.72159 -17.77624 -17.20982 -17.07972 -16.72777 -16.27716 -15.82392 -15.44639 -15.06355 -14.99096 -14.68575 -14.32313 -13.78762 -13.56689 -13.47596 -13.29722 -13.15114 -12.97781 -12.90852 -12.68592 -12.59731 -12.37307 -12.30733 -11.83110 -11.71587 -11.53194 -11.41692 -11.34994 -11.00381 -10.81600 -10.56919 -9.96135 -9.84737 -8.87590 -7.85366 -5.17210 1.44418 1.44777 1.47678 1.53012 1.73513 2.31728 2.49821 3.34090 3.40031 3.71914 3.82808 3.89357 3.99620 4.05584 4.16804 4.29695 4.35712 4.42462 4.51405 4.53480 4.63514 4.71495 4.72876 4.81988 4.83017 4.88903 4.93510 5.05247 5.09317 5.10571 5.11590 5.23420 5.34462 5.44533 5.48973 5.52858 5.62389 5.75389 5.84317 5.99123 6.11256 6.64733 6.96579 7.33496 7.67003 8.61783 9.31503 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.004115 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.437378 B = 6803.490015 C = 7983.154250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.215 4.215 8 H 0.087 0.913 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.133 3.867 15 N -0.716 5.716 16 C 0.505 3.495 17 O -0.585 6.585 18 C -0.127 4.127 19 C -0.041 4.041 20 H 0.061 0.939 21 C -0.152 4.152 22 C -0.164 4.164 23 C -0.089 4.089 24 C -0.121 4.121 25 C -0.112 4.112 26 H 0.245 0.755 27 H 0.022 0.978 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.408 0.592 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.521 -10.785 -2.184 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.210 1.210 7 C -0.343 4.343 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.025 3.975 11 C -0.171 4.171 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.008 3.992 15 N -0.366 5.366 16 C 0.293 3.707 17 O -0.466 6.466 18 C -0.167 4.167 19 C -0.059 4.059 20 H 0.080 0.920 21 C -0.171 4.171 22 C -0.182 4.182 23 C -0.125 4.125 24 C -0.158 4.158 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.244 0.756 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.562 -10.808 -1.407 20.669 hybrid contribution -0.445 1.298 -0.186 1.385 sum 17.118 -9.510 -1.593 19.647 Atomic orbital electron populations 1.70002 1.06362 1.25246 1.58974 1.25537 0.96416 1.00601 1.03901 0.85300 0.77231 0.79597 0.78149 1.19794 1.22550 1.21031 1.19299 0.90773 0.83053 1.41188 0.89564 1.46410 1.03201 0.99997 1.85951 1.22158 0.87192 0.91761 0.96424 1.23577 0.95332 0.97847 1.00340 1.22664 0.93229 0.84610 0.96767 0.91107 1.21468 0.83079 0.99013 0.95625 1.46021 1.05881 1.63100 1.21595 1.21308 0.86225 0.77480 0.85700 1.90643 1.88021 1.46203 1.21729 1.21754 0.90056 1.04402 1.00492 1.19789 0.94345 0.93594 0.98199 0.92037 1.22100 0.97909 0.96006 1.01035 1.22251 0.94920 0.99723 1.01275 1.20493 0.94252 0.95146 1.02651 1.21619 0.98603 0.95556 1.00069 1.21667 0.92639 1.00683 0.99960 0.94630 0.95973 0.94424 0.88820 0.90590 0.90634 0.94445 0.75641 0.87311 0.86667 0.89786 0.87862 0.90293 0.89707 0.92858 0.89785 0.90750 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.57 11.39 21.65 0.25 -57.32 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.40 29.55 68.60 2.03 47.42 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.21 -11.44 10.51 84.03 0.88 -10.56 16 8 H 0.09 4.32 7.80 -2.91 -0.02 4.30 16 9 N -0.63 -30.38 3.57 -694.06 -2.48 -32.86 16 10 C 0.15 6.92 7.51 86.48 0.65 7.57 16 11 C -0.13 -4.62 7.86 31.26 0.25 -4.37 16 12 C 0.13 4.87 4.33 45.10 0.20 5.07 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.13 4.68 5.54 86.38 0.48 5.16 16 15 N -0.72 -22.74 5.53 -463.05 -2.56 -25.30 16 16 C 0.50 15.97 7.46 87.66 0.65 16.63 16 17 O -0.59 -22.79 14.24 -3.05 -0.04 -22.84 16 18 C -0.13 -2.90 5.14 29.85 0.15 -2.75 16 19 C -0.04 -0.94 2.12 -11.73 -0.02 -0.97 16 20 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 21 C -0.15 -3.79 8.40 27.04 0.23 -3.56 16 22 C -0.16 -3.33 9.80 27.03 0.27 -3.07 16 23 C -0.09 -1.34 6.11 29.66 0.18 -1.16 16 24 C -0.12 -1.86 6.01 30.73 0.18 -1.68 16 25 C -0.11 -1.89 5.30 30.74 0.16 -1.73 16 26 H 0.24 14.50 8.31 -92.70 -0.77 13.73 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.99 7.16 -2.38 -0.02 1.97 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 32 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.41 11.88 8.47 -92.71 -0.79 11.09 16 34 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.53 6.47 -2.91 -0.02 2.51 16 37 H 0.10 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -69.12 345.32 2.10 -67.02 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.19 Total: 22.87 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.72 Total: 1.00 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.79 Total: -115.47 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.04 Total: -22.84 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.12 2.10 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499004187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.285 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds