Wall clock time and date at job start Tue Mar 31 2020 00:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48504 * 109.46859 * 269.99488 * 3 2 1 5 5 H 1.48494 * 109.47141 * 29.99481 * 3 2 1 6 6 H 1.48501 * 109.47130 * 149.99722 * 3 2 1 7 7 C 1.38814 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49360 * 0.02562 * 9 7 2 11 11 C 1.53949 * 86.12052 * 155.35225 * 10 9 7 12 12 C 1.47581 * 134.49240 * 179.97438 * 9 7 2 13 13 H 1.09000 * 113.87122 * 90.33663 * 12 9 7 14 14 C 1.53002 * 113.77161 * 318.94386 * 12 9 7 15 15 N 1.46502 * 109.46507 * 78.50418 * 14 12 9 16 16 C 1.34781 * 119.99631 * 179.97438 * 15 14 12 17 17 O 1.21279 * 119.99862 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47261 * 180.02562 * 18 16 15 20 20 H 1.08995 * 109.24630 * 305.34923 * 19 18 16 21 21 C 1.50076 * 109.35545 * 65.00153 * 19 18 16 22 22 C 1.29444 * 124.07409 * 137.33969 * 21 19 18 23 23 C 1.50065 * 124.07627 * 359.53081 * 22 21 19 24 24 C 1.53020 * 110.14790 * 17.12844 * 23 22 21 25 25 C 1.53020 * 109.35963 * 185.68539 * 19 18 16 26 26 H 0.96998 * 120.00580 * 0.02562 * 1 2 3 27 27 H 1.09007 * 113.76901 * 41.04976 * 10 9 7 28 28 H 1.09002 * 113.76881 * 269.65259 * 10 9 7 29 29 H 1.08998 * 113.73924 * 269.26685 * 11 10 9 30 30 H 1.08999 * 113.74083 * 137.95061 * 11 10 9 31 31 H 1.09002 * 109.47185 * 318.51105 * 14 12 9 32 32 H 1.08998 * 109.47271 * 198.50337 * 14 12 9 33 33 H 0.96998 * 120.00316 * 0.02562 * 15 14 12 34 34 H 1.09003 * 109.47129 * 59.99915 * 18 16 15 35 35 H 1.09007 * 109.46929 * 300.00274 * 18 16 15 36 36 H 1.08002 * 117.96076 * 317.61390 * 21 19 18 37 37 H 1.07995 * 117.95736 * 179.55009 * 22 21 19 38 38 H 1.08999 * 109.35990 * 137.33904 * 23 22 21 39 39 H 1.09003 * 109.35519 * 257.06249 * 23 22 21 40 40 H 1.09005 * 109.64107 * 70.25597 * 24 23 22 41 41 H 1.08998 * 109.64184 * 190.87814 * 24 23 22 42 42 H 1.08998 * 109.63964 * 70.67722 * 25 19 18 43 43 H 1.08994 * 109.82102 * 310.14954 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1032 -2.7575 0.0019 11 6 0.3471 -4.0835 -0.6374 12 6 1.7203 -3.8101 0.0019 13 1 1.8334 -4.2363 0.9988 14 6 2.9019 -4.1225 -0.9185 15 7 4.1496 -3.7189 -0.2653 16 6 5.3282 -3.9001 -0.8934 17 8 5.3558 -4.3969 -1.9994 18 6 6.6117 -3.4855 -0.2212 19 6 7.7933 -3.7977 -1.1416 20 1 7.7619 -4.8504 -1.4221 21 6 7.6989 -2.9507 -2.3769 22 6 8.7070 -2.3495 -2.9229 23 6 10.1091 -2.4072 -2.3911 24 6 10.2542 -3.5752 -1.4132 25 6 9.1019 -3.5083 -0.4030 26 1 -0.4851 0.8400 -0.0004 27 1 -0.7169 -2.1396 -0.6538 28 1 -0.5271 -2.8724 0.9996 29 1 0.3591 -4.0634 -1.7272 30 1 -0.1591 -4.9600 -0.2328 31 1 2.7881 -3.5751 -1.8542 32 1 2.9291 -5.1925 -1.1244 33 1 4.1275 -3.3219 0.6195 34 1 6.7251 -4.0328 0.7146 35 1 6.5848 -2.4154 -0.0153 36 1 6.7289 -2.8320 -2.8366 37 1 8.5277 -1.7702 -3.8164 38 1 10.8045 -2.5411 -3.2197 39 1 10.3380 -1.4753 -1.8742 40 1 10.2090 -4.5177 -1.9589 41 1 11.2065 -3.4975 -0.8885 42 1 9.2548 -4.2539 0.3772 43 1 9.0626 -2.5144 0.0428 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499004188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:07 Heat of formation + Delta-G solvation = -7.123841 kcal Electronic energy + Delta-G solvation = -21802.409619 eV Core-core repulsion = 18654.889548 eV Total energy + Delta-G solvation = -3147.520071 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.03261 -39.78818 -38.94082 -35.45329 -34.20440 -33.60384 -31.86784 -30.02771 -29.65827 -27.60286 -25.29261 -24.03715 -23.15346 -22.80912 -21.38532 -20.72886 -18.84382 -18.72865 -17.77156 -17.21835 -17.08818 -16.73179 -16.31875 -15.77241 -15.44880 -15.14461 -14.98886 -14.62276 -14.34191 -13.78700 -13.58348 -13.50397 -13.28390 -13.16490 -12.98314 -12.94809 -12.69715 -12.61451 -12.35818 -12.28009 -11.84018 -11.70834 -11.52941 -11.42750 -11.33198 -11.00770 -10.84050 -10.58185 -9.96089 -9.87043 -8.88051 -7.86537 -5.18011 1.41401 1.42808 1.44834 1.51847 1.73505 2.32204 2.48421 3.33685 3.39170 3.72232 3.81464 3.89315 4.00109 4.05131 4.16460 4.29685 4.35961 4.42350 4.50857 4.53628 4.64410 4.70999 4.72066 4.80925 4.83931 4.89008 4.92938 5.05232 5.08116 5.11101 5.11400 5.23839 5.34094 5.43326 5.49721 5.53299 5.62123 5.75475 5.81066 5.98582 6.09670 6.64976 6.95980 7.33820 7.66065 8.60902 9.30475 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.004496 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.594711 B = 6225.815672 C = 7382.564389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.212 4.212 8 H 0.086 0.914 9 N -0.630 5.630 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.073 0.927 14 C 0.133 3.867 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.585 6.585 18 C -0.128 4.128 19 C -0.037 4.037 20 H 0.073 0.927 21 C -0.154 4.154 22 C -0.168 4.168 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.245 0.755 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.408 0.592 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.519 -9.485 1.680 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.794 3.206 4 H -0.224 1.224 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.340 4.340 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.090 0.910 14 C 0.008 3.992 15 N -0.366 5.366 16 C 0.292 3.708 17 O -0.466 6.466 18 C -0.168 4.168 19 C -0.056 4.056 20 H 0.091 0.909 21 C -0.173 4.173 22 C -0.186 4.186 23 C -0.126 4.126 24 C -0.156 4.156 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.244 0.756 34 H 0.144 0.856 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.567 -9.502 0.910 19.993 hybrid contribution -0.516 1.571 0.024 1.654 sum 17.050 -7.931 0.935 18.828 Atomic orbital electron populations 1.69996 1.06293 1.25134 1.59079 1.25501 0.96396 1.00474 1.04004 0.85273 0.78067 0.80179 0.77067 1.22350 1.22320 1.18873 1.19307 0.90708 0.83057 1.40946 0.89677 1.46414 1.03244 1.00016 1.85944 1.22170 0.87165 0.91763 0.96456 1.23567 0.95348 0.97858 1.00321 1.22662 0.93222 0.84546 0.96817 0.90968 1.21472 0.83088 0.99073 0.95580 1.46024 1.05896 1.63109 1.21592 1.21324 0.86284 0.77447 0.85697 1.90644 1.88061 1.46338 1.21558 1.21769 0.90099 1.04254 1.00632 1.19795 0.94319 0.99026 0.92455 0.90860 1.22143 0.98058 0.98908 0.98161 1.22245 0.95903 1.00306 1.00111 1.20496 0.93081 0.99657 0.99333 1.21617 0.98915 0.98111 0.96986 1.21672 0.92443 1.02909 0.97873 0.94635 0.94449 0.95888 0.90654 0.88740 0.94611 0.90482 0.75645 0.85641 0.88283 0.90758 0.88678 0.90249 0.90127 0.92304 0.89575 0.89687 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.65 11.38 21.65 0.25 -57.41 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.96 45.81 29.55 68.60 2.03 47.84 16 4 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.21 -11.33 10.51 84.03 0.88 -10.44 16 8 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 9 N -0.63 -30.44 3.58 -694.01 -2.48 -32.92 16 10 C 0.15 6.91 7.51 86.48 0.65 7.56 16 11 C -0.13 -4.60 7.86 31.25 0.25 -4.36 16 12 C 0.13 4.86 4.33 45.09 0.20 5.06 16 13 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 14 C 0.13 4.66 5.54 86.38 0.48 5.14 16 15 N -0.72 -22.70 5.53 -463.05 -2.56 -25.26 16 16 C 0.50 15.91 7.46 87.66 0.65 16.57 16 17 O -0.59 -22.78 14.29 -3.03 -0.04 -22.82 16 18 C -0.13 -2.89 5.13 29.85 0.15 -2.73 16 19 C -0.04 -0.85 2.11 -11.73 -0.02 -0.88 16 20 H 0.07 1.85 7.93 -2.39 -0.02 1.83 16 21 C -0.15 -4.29 8.42 27.04 0.23 -4.06 16 22 C -0.17 -3.98 9.80 27.04 0.27 -3.71 16 23 C -0.09 -1.51 6.12 29.66 0.18 -1.33 16 24 C -0.12 -1.79 6.01 30.73 0.18 -1.61 16 25 C -0.11 -1.80 5.30 30.73 0.16 -1.63 16 26 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.04 1.98 7.15 -2.38 -0.02 1.96 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.41 11.86 8.47 -92.71 -0.79 11.07 16 34 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.07 2.60 6.54 -2.91 -0.02 2.58 16 37 H 0.10 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 0.96 8.12 -2.38 -0.02 0.94 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -69.91 345.42 2.10 -67.81 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.19 Total: 22.76 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 4.72 Total: 0.00 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.79 Total: -115.58 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.04 Total: -22.82 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.91 2.10 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499004188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.683 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds