Wall clock time and date at job start Tue Mar 31 2020 00:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00357 * 2 1 4 4 H 1.48499 * 109.47225 * 269.99879 * 3 2 1 5 5 H 1.48504 * 109.46833 * 29.99890 * 3 2 1 6 6 H 1.48498 * 109.47220 * 149.99874 * 3 2 1 7 7 C 1.38807 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00547 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47279 * 187.25347 * 10 9 7 12 12 H 1.08997 * 109.87189 * 314.91244 * 11 10 9 13 13 C 1.54326 * 109.88264 * 193.73720 * 11 10 9 14 14 C 1.55158 * 102.94187 * 218.39317 * 13 11 10 15 15 C 1.54681 * 101.67777 * 35.33128 * 14 13 11 16 16 N 1.47017 * 109.88035 * 75.92853 * 11 10 9 17 17 C 1.34778 * 125.64938 * 298.31840 * 16 11 10 18 18 O 1.21277 * 119.99717 * 5.51655 * 17 16 11 19 19 C 1.50699 * 120.00067 * 185.24542 * 17 16 11 20 20 C 1.53005 * 119.29921 * 263.80387 * 19 17 16 21 21 C 1.53873 * 121.33192 * 191.96857 * 19 17 16 22 22 H 1.09001 * 121.33114 * 359.43352 * 21 19 17 23 23 C 1.54268 * 106.59777 * 221.93328 * 21 19 17 24 24 C 1.54892 * 104.19555 * 23.61120 * 23 21 19 25 25 C 1.54268 * 117.41206 * 58.14156 * 19 17 16 26 26 H 0.97006 * 119.99275 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00102 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.46852 * 67.25267 * 10 9 7 29 29 H 1.08993 * 109.47191 * 307.25833 * 10 9 7 30 30 H 1.09006 * 110.71913 * 336.75171 * 13 11 10 31 31 H 1.08995 * 110.71837 * 99.84585 * 13 11 10 32 32 H 1.08993 * 111.00564 * 153.57776 * 14 13 11 33 33 H 1.08999 * 110.99734 * 277.38602 * 14 13 11 34 34 H 1.09000 * 110.39269 * 204.36467 * 15 14 13 35 35 H 1.09008 * 110.23657 * 82.11619 * 15 14 13 36 36 H 1.09005 * 117.45752 * 356.28750 * 20 19 17 37 37 H 1.08995 * 117.46182 * 141.09235 * 20 19 17 38 38 H 1.08997 * 110.48665 * 264.92603 * 23 21 19 39 39 H 1.09007 * 110.59667 * 142.34344 * 23 21 19 40 40 H 1.08997 * 110.75195 * 203.73760 * 24 23 21 41 41 H 1.09002 * 110.91332 * 80.44460 * 24 23 21 42 42 H 1.09005 * 110.48515 * 235.04730 * 25 19 17 43 43 H 1.08994 * 110.48531 * 357.55881 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0737 -4.8139 -0.1816 12 1 0.2075 -4.6687 0.4640 13 6 1.7665 -6.1507 0.1571 14 6 1.1881 -7.1212 -0.9063 15 6 1.0531 -6.1933 -2.1365 16 7 0.6440 -4.8885 -1.5856 17 6 -0.0194 -3.9258 -2.2562 18 8 -0.2230 -2.8516 -1.7314 19 6 -0.5028 -4.1822 -3.6604 20 6 0.3509 -3.7186 -4.8425 21 6 -1.0160 -3.0374 -4.5514 22 1 -1.0529 -2.0101 -4.1891 23 6 -2.2683 -3.5713 -5.2770 24 6 -2.7762 -4.7162 -4.3657 25 6 -1.4612 -5.3717 -3.8755 26 1 -0.4849 0.8402 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.5837 -3.7728 0.9483 29 1 2.7784 -3.6605 -0.8173 30 1 2.8478 -6.0623 0.0510 31 1 1.5047 -6.4765 1.1637 32 1 1.8798 -7.9395 -1.1058 33 1 0.2141 -7.5019 -0.5988 34 1 0.2914 -6.5734 -2.8172 35 1 2.0111 -6.1051 -2.6491 36 1 1.2589 -3.1589 -4.6178 37 1 0.4071 -4.3758 -5.7102 38 1 -2.0036 -3.9563 -6.2617 39 1 -3.0232 -2.7898 -5.3643 40 1 -3.3734 -5.4277 -4.9359 41 1 -3.3471 -4.3206 -3.5256 42 1 -1.0661 -6.0476 -4.6340 43 1 -1.6242 -5.9045 -2.9387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499913405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:32 Heat of formation + Delta-G solvation = -2.752943 kcal Electronic energy + Delta-G solvation = -23124.055339 eV Core-core repulsion = 19976.724804 eV Total energy + Delta-G solvation = -3147.330535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57063 -39.80293 -37.93982 -36.20239 -33.36599 -32.59979 -32.34381 -30.41202 -29.16732 -26.69359 -25.18121 -24.23174 -23.39858 -22.19818 -21.58753 -20.90521 -19.53510 -18.98056 -17.66885 -17.46419 -16.77041 -16.34013 -16.06921 -15.26999 -15.10538 -14.99220 -14.79914 -14.34959 -14.14302 -14.08424 -13.92316 -13.65617 -13.13254 -13.11274 -12.95678 -12.77615 -12.56125 -12.26489 -12.22890 -12.04504 -11.98306 -11.81628 -11.75411 -11.59248 -11.48931 -11.23892 -10.93251 -10.60654 -10.27185 -9.46200 -8.79981 -7.82830 -5.09982 1.37318 1.41768 1.49811 1.83182 2.11592 2.55948 2.61759 3.43927 3.47861 3.58464 3.65909 3.73887 3.84426 3.93574 4.03308 4.27090 4.31265 4.40723 4.42758 4.46642 4.52310 4.63907 4.71876 4.73155 4.78899 4.81602 4.85191 4.94122 4.96371 4.99677 5.04666 5.15643 5.17045 5.19689 5.20159 5.30643 5.41273 5.44687 5.47903 5.67877 6.33964 6.78527 7.38141 7.57801 8.32015 8.57483 9.39090 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.007008 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.581353 B = 3994.277790 C = 5450.056077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.062 0.938 9 N -0.731 5.731 10 C 0.144 3.856 11 C 0.129 3.871 12 H 0.043 0.957 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.093 3.907 16 N -0.614 5.614 17 C 0.529 3.471 18 O -0.531 6.531 19 C -0.167 4.167 20 C -0.109 4.109 21 C -0.156 4.156 22 H 0.068 0.932 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.071 4.071 26 H 0.242 0.758 27 H 0.385 0.615 28 H 0.022 0.978 29 H 0.006 0.994 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.044 0.956 42 H 0.109 0.891 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 -21.414 -11.154 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.379 5.379 10 C 0.016 3.984 11 C 0.025 3.975 12 H 0.062 0.938 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.028 4.028 16 N -0.349 5.349 17 C 0.317 3.683 18 O -0.405 6.405 19 C -0.170 4.170 20 C -0.146 4.146 21 C -0.175 4.175 22 H 0.087 0.913 23 C -0.121 4.121 24 C -0.158 4.158 25 C -0.108 4.108 26 H 0.051 0.949 27 H 0.224 0.776 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.063 0.937 42 H 0.128 0.872 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.242 -20.673 -10.887 23.398 hybrid contribution 0.219 2.028 0.581 2.121 sum -1.023 -18.645 -10.307 21.329 Atomic orbital electron populations 1.69976 1.06542 1.24791 1.59178 1.25558 0.96323 1.00803 1.04329 0.85209 0.77841 0.80008 0.77130 1.22067 1.21899 1.19225 1.19555 0.90720 0.86245 1.41154 0.91963 1.42988 1.06649 1.00180 1.88103 1.21161 0.93958 0.86514 0.96782 1.21835 0.95963 0.96577 0.83124 0.93841 1.22617 1.00594 0.90929 1.01136 1.22747 1.02897 0.97059 0.92805 1.22584 1.00940 0.81544 0.97772 1.48491 1.56622 1.17878 1.11919 1.20013 0.77990 0.82918 0.87395 1.90918 1.55868 1.24781 1.68956 1.22419 1.05245 1.00697 0.88632 1.23472 0.92548 1.01411 0.97163 1.23755 0.95852 0.95845 1.02031 0.91314 1.21957 0.93376 0.97794 0.98924 1.22692 0.96915 0.97433 0.98750 1.21975 0.92675 0.93835 1.02295 0.94920 0.77602 0.96019 0.97579 0.89755 0.88603 0.86562 0.89921 0.88400 0.91391 0.90934 0.84033 0.88239 0.91521 0.87726 0.93673 0.87232 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -66.55 13.06 21.65 0.28 -66.27 16 2 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 3 Si 0.97 51.67 29.55 68.60 2.03 53.69 16 4 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16 5 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 6 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.24 -15.72 9.99 84.03 0.84 -14.88 16 8 H 0.06 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.73 -43.78 4.06 -343.45 -1.40 -45.18 16 10 C 0.14 6.68 5.61 86.38 0.48 7.17 16 11 C 0.13 4.67 3.09 45.34 0.14 4.81 16 12 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 13 C -0.11 -2.57 6.44 31.78 0.20 -2.37 16 14 C -0.12 -1.84 7.07 31.91 0.23 -1.61 16 15 C 0.09 1.95 6.66 86.77 0.58 2.53 16 16 N -0.61 -20.90 3.07 -788.51 -2.42 -23.32 16 17 C 0.53 22.04 7.17 87.66 0.63 22.67 16 18 O -0.53 -29.98 13.00 -3.02 -0.04 -30.02 16 19 C -0.17 -5.07 1.97 -52.20 -0.10 -5.17 16 20 C -0.11 -2.94 10.00 31.45 0.31 -2.63 16 21 C -0.16 -4.95 6.67 -9.22 -0.06 -5.01 16 22 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 23 C -0.08 -1.82 6.64 31.67 0.21 -1.61 16 24 C -0.12 -2.41 6.91 31.89 0.22 -2.19 16 25 C -0.07 -1.43 4.78 31.67 0.15 -1.28 16 26 H 0.24 16.32 8.31 -92.70 -0.77 15.55 16 27 H 0.39 25.17 5.17 -92.71 -0.48 24.69 16 28 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.08 1.80 7.85 -2.38 -0.02 1.78 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.60 5.54 -2.39 -0.01 1.59 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.07 1.43 7.34 -2.39 -0.02 1.41 16 Total: -1.00 -88.77 336.63 3.27 -85.50 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.51 Total: 29.78 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 4.30 Total: -4.19 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -3.53 Total: -134.76 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.04 Total: -30.02 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.03 Total: 53.69 kcal Total: -88.77 3.27 -85.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499913405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.747 kcal (2) G-P(sol) polarization free energy of solvation -88.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds