Wall clock time and date at job start Tue Mar 31 2020 00:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48498 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46692 * 299.99440 * 3 2 1 6 6 H 1.48493 * 109.47118 * 59.99428 * 3 2 1 7 7 C 1.38816 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00373 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99750 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99851 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.90553 * 316.24800 * 11 10 9 13 13 C 1.53778 * 113.61726 * 87.50646 * 11 10 9 14 14 C 1.53778 * 87.08449 * 139.98071 * 13 11 10 15 15 H 1.08993 * 113.61229 * 220.02023 * 14 13 11 16 16 N 1.46501 * 113.61560 * 89.11214 * 14 13 11 17 17 C 1.34781 * 119.99552 * 107.49938 * 16 14 13 18 18 O 1.21273 * 120.00172 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99750 * 179.97438 * 17 16 14 20 20 C 1.53001 * 109.47072 * 180.02562 * 19 17 16 21 21 H 1.08991 * 110.34517 * 304.16924 * 20 19 17 22 22 C 1.51103 * 110.38669 * 66.45353 * 20 19 17 23 23 C 1.30527 * 111.10286 * 135.24309 * 22 20 19 24 24 C 1.51096 * 111.10547 * 0.02562 * 23 22 20 25 25 C 1.54628 * 110.38555 * 181.75717 * 20 19 17 26 26 C 1.53784 * 87.08081 * 334.56700 * 14 13 11 27 27 H 0.96997 * 119.99860 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00019 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47131 * 60.00569 * 10 9 7 30 30 H 1.09005 * 109.47637 * 300.00110 * 10 9 7 31 31 H 1.08999 * 113.61111 * 254.53134 * 13 11 10 32 32 H 1.08999 * 113.61280 * 25.34517 * 13 11 10 33 33 H 0.96998 * 120.00259 * 287.50678 * 16 14 13 34 34 H 1.09000 * 109.47285 * 300.00722 * 19 17 16 35 35 H 1.08993 * 109.46779 * 60.00471 * 19 17 16 36 36 H 1.08005 * 124.44741 * 315.23230 * 22 20 19 37 37 H 1.07998 * 124.44514 * 180.02562 * 23 22 20 38 38 H 1.09005 * 110.38948 * 102.36814 * 24 23 22 39 39 H 1.08995 * 110.38774 * 224.74949 * 24 23 22 40 40 H 1.09006 * 111.04101 * 334.58498 * 25 20 19 41 41 H 1.09002 * 111.03714 * 98.52614 * 25 20 19 42 42 H 1.09004 * 113.61451 * 270.88641 * 26 14 13 43 43 H 1.08994 * 113.61477 * 139.97943 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.2371 -4.6707 0.6969 13 6 0.6162 -5.2484 -1.4051 14 6 0.7044 -6.7001 -0.9055 15 1 1.1226 -7.3896 -1.6387 16 7 -0.5388 -7.1907 -0.3054 17 6 -1.2960 -8.0901 -0.9644 18 8 -0.9480 -8.4936 -2.0538 19 6 -2.5745 -8.5953 -0.3469 20 6 -3.2361 -9.5991 -1.2933 21 1 -3.3983 -9.1473 -2.2718 22 6 -2.3853 -10.8412 -1.4216 23 6 -3.1147 -11.9208 -1.3418 24 6 -4.5735 -11.5786 -1.1476 25 6 -4.5737 -10.0984 -0.6995 26 6 1.7304 -6.2001 0.1252 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 0.0016 29 1 2.6852 -3.7142 0.8911 30 1 2.6840 -3.7150 -0.8888 31 1 -0.3967 -4.9337 -1.6559 32 1 1.3391 -5.0090 -2.1850 33 1 -0.8170 -6.8682 0.5661 34 1 -2.3518 -9.0833 0.6019 35 1 -3.2505 -7.7578 -0.1748 36 1 -1.3143 -10.8364 -1.5612 37 1 -2.7264 -12.9265 -1.4061 38 1 -5.1182 -11.6921 -2.0849 39 1 -5.0117 -12.2091 -0.3740 40 1 -4.5733 -10.0185 0.3877 41 1 -5.4181 -9.5597 -1.1295 42 1 2.7585 -6.2221 -0.2361 43 1 1.6168 -6.6537 1.1098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506874741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:46 Heat of formation + Delta-G solvation = 0.367800 kcal Electronic energy + Delta-G solvation = -20928.315582 eV Core-core repulsion = 17781.120373 eV Total energy + Delta-G solvation = -3147.195209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37955 -39.10145 -37.84490 -34.51659 -33.16086 -31.69994 -30.74047 -29.15164 -27.01183 -25.57580 -25.47665 -23.30485 -21.48749 -21.06127 -20.53500 -19.07308 -18.85245 -17.20496 -16.95010 -16.10389 -16.04159 -15.53619 -14.98363 -14.73449 -14.38319 -14.02184 -13.62252 -13.40546 -13.08081 -12.70226 -12.34124 -12.27240 -12.12215 -12.08080 -12.06188 -11.61594 -11.49515 -11.36649 -11.03159 -10.98042 -10.84144 -10.46325 -10.31323 -10.06786 -9.83789 -9.78430 -9.59015 -9.09388 -8.96673 -8.83509 -6.89298 -5.75420 -3.03425 2.11831 2.61000 3.12014 3.43815 3.49365 3.51685 4.33498 4.37811 4.58688 4.61258 4.68326 4.79343 4.84297 5.00185 5.13425 5.15703 5.16693 5.20668 5.30825 5.41929 5.55592 5.59102 5.61245 5.70117 5.76449 5.88433 5.93721 5.95103 6.03171 6.04199 6.12764 6.26335 6.33248 6.39710 6.44207 6.66546 6.72572 6.79917 6.95350 7.49503 7.71595 8.21562 8.43957 9.54942 10.14281 10.48687 11.47723 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038007 B = 0.002611 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.522266 B =10722.057188 C =11195.895760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.139 4.139 14 C 0.115 3.885 15 H 0.098 0.902 16 N -0.711 5.711 17 C 0.514 3.486 18 O -0.540 6.540 19 C -0.134 4.134 20 C -0.054 4.054 21 H 0.090 0.910 22 C -0.139 4.139 23 C -0.185 4.185 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.138 4.138 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -23.172 0.944 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 H 0.105 0.895 13 C -0.178 4.178 14 C 0.010 3.990 15 H 0.116 0.884 16 N -0.362 5.362 17 C 0.301 3.699 18 O -0.417 6.417 19 C -0.174 4.174 20 C -0.072 4.072 21 H 0.108 0.892 22 C -0.157 4.157 23 C -0.203 4.203 24 C -0.136 4.136 25 C -0.160 4.160 26 C -0.177 4.177 27 H 0.064 0.936 28 H 0.216 0.784 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.235 0.765 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.659 -23.344 0.154 24.275 hybrid contribution 0.104 1.244 0.430 1.320 sum -6.556 -22.100 0.585 23.059 Atomic orbital electron populations 1.69668 1.05112 1.25469 1.58080 1.24746 0.95540 0.97706 1.03211 0.86116 0.78782 0.84147 0.77171 1.20571 1.21887 1.21893 1.19298 0.91063 0.84266 1.42238 0.91180 1.42360 1.05842 1.00021 1.89378 1.20642 0.93030 0.85230 0.97652 1.22752 0.99071 0.94212 0.97123 0.89463 1.23406 1.02409 0.94292 0.97648 1.21916 0.84642 0.95897 0.96531 0.88424 1.45753 1.23740 1.44225 1.22504 1.20688 0.85359 0.78357 0.85514 1.90690 1.72294 1.57996 1.20697 1.21734 0.94949 1.00360 1.00348 1.20819 0.93321 0.94032 0.99077 0.89184 1.23332 0.99632 0.93905 0.98803 1.23244 0.95478 0.98522 1.03051 1.21335 0.95015 0.96085 1.01168 1.22570 0.96859 0.95690 1.00914 1.23312 0.98900 0.96614 0.98874 0.93615 0.78352 0.96416 0.96230 0.91396 0.89219 0.76460 0.88798 0.88551 0.85681 0.86161 0.90916 0.91413 0.90852 0.90771 0.88813 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.71 5.60 -59.91 -0.34 -19.04 16 10 C 0.16 3.24 6.10 -4.04 -0.02 3.21 16 11 C -0.11 -1.75 3.63 -89.80 -0.33 -2.07 16 12 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.14 -2.09 7.43 -25.92 -0.19 -2.28 16 14 C 0.12 1.47 4.32 -67.12 -0.29 1.18 16 15 H 0.10 1.33 7.47 -51.93 -0.39 0.94 16 16 N -0.71 -7.89 5.26 -53.02 -0.28 -8.17 16 17 C 0.51 6.11 7.59 -10.98 -0.08 6.03 16 18 O -0.54 -8.37 14.28 5.56 0.08 -8.29 16 19 C -0.13 -1.14 5.12 -27.88 -0.14 -1.28 16 20 C -0.05 -0.50 2.54 -90.72 -0.23 -0.73 16 21 H 0.09 0.98 8.01 -51.93 -0.42 0.56 16 22 C -0.14 -1.40 9.19 -35.70 -0.33 -1.73 16 23 C -0.19 -1.60 10.77 -35.70 -0.38 -1.99 16 24 C -0.10 -0.72 6.81 -26.82 -0.18 -0.91 16 25 C -0.12 -0.88 6.71 -25.01 -0.17 -1.05 16 26 C -0.14 -1.68 7.39 -25.91 -0.19 -1.87 16 27 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.39 7.89 -51.93 -0.41 0.98 16 33 H 0.40 3.60 8.70 -40.82 -0.36 3.25 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.13 1.43 7.31 -52.48 -0.38 1.05 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -32.84 350.55 -9.62 -42.46 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.28 Total: 8.91 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.79 Total: -10.94 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.11 Total: -55.01 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.84 -9.62 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506874741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.830 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds