Wall clock time and date at job start Tue Mar 31 2020 00:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48498 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46692 * 299.99440 * 3 2 1 6 6 H 1.48493 * 109.47118 * 59.99428 * 3 2 1 7 7 C 1.38816 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00373 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99750 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99851 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.90553 * 316.24800 * 11 10 9 13 13 C 1.53778 * 113.61726 * 87.50646 * 11 10 9 14 14 C 1.53778 * 87.08449 * 139.98071 * 13 11 10 15 15 H 1.08993 * 113.61229 * 220.02023 * 14 13 11 16 16 N 1.46501 * 113.61560 * 89.11214 * 14 13 11 17 17 C 1.34781 * 119.99552 * 107.49938 * 16 14 13 18 18 O 1.21273 * 120.00172 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99750 * 179.97438 * 17 16 14 20 20 C 1.53001 * 109.47072 * 180.02562 * 19 17 16 21 21 H 1.08991 * 110.34517 * 304.16924 * 20 19 17 22 22 C 1.51103 * 110.38669 * 66.45353 * 20 19 17 23 23 C 1.30527 * 111.10286 * 135.24309 * 22 20 19 24 24 C 1.51096 * 111.10547 * 0.02562 * 23 22 20 25 25 C 1.54628 * 110.38555 * 181.75717 * 20 19 17 26 26 C 1.53784 * 87.08081 * 334.56700 * 14 13 11 27 27 H 0.96997 * 119.99860 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00019 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47131 * 60.00569 * 10 9 7 30 30 H 1.09005 * 109.47637 * 300.00110 * 10 9 7 31 31 H 1.08999 * 113.61111 * 254.53134 * 13 11 10 32 32 H 1.08999 * 113.61280 * 25.34517 * 13 11 10 33 33 H 0.96998 * 120.00259 * 287.50678 * 16 14 13 34 34 H 1.09000 * 109.47285 * 300.00722 * 19 17 16 35 35 H 1.08993 * 109.46779 * 60.00471 * 19 17 16 36 36 H 1.08005 * 124.44741 * 315.23230 * 22 20 19 37 37 H 1.07998 * 124.44514 * 180.02562 * 23 22 20 38 38 H 1.09005 * 110.38948 * 102.36814 * 24 23 22 39 39 H 1.08995 * 110.38774 * 224.74949 * 24 23 22 40 40 H 1.09006 * 111.04101 * 334.58498 * 25 20 19 41 41 H 1.09002 * 111.03714 * 98.52614 * 25 20 19 42 42 H 1.09004 * 113.61451 * 270.88641 * 26 14 13 43 43 H 1.08994 * 113.61477 * 139.97943 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.2371 -4.6707 0.6969 13 6 0.6162 -5.2484 -1.4051 14 6 0.7044 -6.7001 -0.9055 15 1 1.1226 -7.3896 -1.6387 16 7 -0.5388 -7.1907 -0.3054 17 6 -1.2960 -8.0901 -0.9644 18 8 -0.9480 -8.4936 -2.0538 19 6 -2.5745 -8.5953 -0.3469 20 6 -3.2361 -9.5991 -1.2933 21 1 -3.3983 -9.1473 -2.2718 22 6 -2.3853 -10.8412 -1.4216 23 6 -3.1147 -11.9208 -1.3418 24 6 -4.5735 -11.5786 -1.1476 25 6 -4.5737 -10.0984 -0.6995 26 6 1.7304 -6.2001 0.1252 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 0.0016 29 1 2.6852 -3.7142 0.8911 30 1 2.6840 -3.7150 -0.8888 31 1 -0.3967 -4.9337 -1.6559 32 1 1.3391 -5.0090 -2.1850 33 1 -0.8170 -6.8682 0.5661 34 1 -2.3518 -9.0833 0.6019 35 1 -3.2505 -7.7578 -0.1748 36 1 -1.3143 -10.8364 -1.5612 37 1 -2.7264 -12.9265 -1.4061 38 1 -5.1182 -11.6921 -2.0849 39 1 -5.0117 -12.2091 -0.3740 40 1 -4.5733 -10.0185 0.3877 41 1 -5.4181 -9.5597 -1.1295 42 1 2.7585 -6.2221 -0.2361 43 1 1.6168 -6.6537 1.1098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506874741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:46 Heat of formation + Delta-G solvation = -20.286420 kcal Electronic energy + Delta-G solvation = -20929.211216 eV Core-core repulsion = 17781.120373 eV Total energy + Delta-G solvation = -3148.090843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36027 -40.02082 -38.78288 -36.33215 -34.40783 -32.94705 -32.18548 -29.77493 -28.57978 -26.62950 -26.50262 -25.06637 -22.96701 -21.93847 -21.23098 -20.28516 -19.59629 -19.06481 -18.00390 -17.03625 -16.83950 -16.70698 -16.36403 -15.88663 -15.62287 -15.47610 -15.10930 -14.66988 -14.51149 -13.80472 -13.69748 -13.34874 -13.11763 -12.94133 -12.88490 -12.75542 -12.69846 -12.65626 -12.13508 -12.07212 -12.00451 -11.93044 -11.75293 -11.65387 -11.35266 -11.14312 -10.87630 -10.76324 -9.98457 -9.77398 -8.98531 -7.95915 -5.24130 1.40823 1.46603 1.47535 1.57662 1.68424 2.22492 2.55517 3.37185 3.59839 3.60543 3.64925 3.75240 3.93544 3.94774 4.00160 4.04924 4.33091 4.38974 4.50501 4.58117 4.60147 4.68919 4.77316 4.79332 4.84303 4.91223 4.92465 4.97992 4.99720 5.03471 5.12055 5.15869 5.28164 5.31046 5.38368 5.44045 5.49426 5.67889 5.73446 6.01799 6.27295 6.61451 7.31661 7.33050 8.10864 8.33382 9.27985 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038007 B = 0.002611 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.522266 B =10722.057188 C =11195.895760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.110 4.110 12 H 0.087 0.913 13 C -0.144 4.144 14 C 0.126 3.874 15 H 0.090 0.910 16 N -0.705 5.705 17 C 0.510 3.490 18 O -0.581 6.581 19 C -0.126 4.126 20 C -0.056 4.056 21 H 0.066 0.934 22 C -0.165 4.165 23 C -0.176 4.176 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.117 4.117 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.022 0.978 30 H 0.018 0.982 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 -24.217 2.283 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.128 4.128 12 H 0.105 0.895 13 C -0.183 4.183 14 C 0.020 3.980 15 H 0.108 0.892 16 N -0.356 5.356 17 C 0.298 3.702 18 O -0.461 6.461 19 C -0.166 4.166 20 C -0.074 4.074 21 H 0.084 0.916 22 C -0.183 4.183 23 C -0.193 4.193 24 C -0.138 4.138 25 C -0.154 4.154 26 C -0.155 4.155 27 H 0.060 0.940 28 H 0.205 0.795 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.251 0.749 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.727 -24.414 1.521 25.370 hybrid contribution 0.161 1.495 -0.031 1.504 sum -6.566 -22.919 1.491 23.888 Atomic orbital electron populations 1.69819 1.06606 1.25985 1.59709 1.25587 0.96455 1.01166 1.03849 0.85064 0.78223 0.79741 0.76694 1.19053 1.22125 1.21846 1.19702 0.91515 0.85533 1.40900 0.90731 1.42591 1.05611 1.01281 1.89282 1.20835 0.93822 0.84615 0.97439 1.22672 0.98531 0.94236 0.97387 0.89451 1.23415 1.01149 0.96357 0.97362 1.21704 0.85577 0.94096 0.96627 0.89196 1.45716 1.23132 1.43849 1.22904 1.21353 0.86111 0.77749 0.84976 1.90675 1.73384 1.59400 1.22644 1.21777 0.93210 1.00898 1.00695 1.20811 0.94510 0.93784 0.98341 0.91621 1.23272 0.98921 0.95068 1.01015 1.23519 0.96296 0.98579 1.00945 1.21404 0.93938 0.96514 1.01933 1.22580 0.95661 0.95435 1.01750 1.23218 0.98880 0.93506 0.99911 0.94016 0.79529 0.95985 0.96370 0.93111 0.90030 0.74945 0.86483 0.86650 0.87834 0.85240 0.90588 0.89745 0.89328 0.89922 0.87861 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.86 9.99 84.03 0.84 -13.03 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -38.27 5.60 -343.44 -1.92 -40.20 16 10 C 0.16 6.26 6.10 86.38 0.53 6.79 16 11 C -0.11 -3.28 3.63 -10.27 -0.04 -3.32 16 12 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 13 C -0.14 -4.34 7.43 31.12 0.23 -4.11 16 14 C 0.13 3.08 4.32 45.52 0.20 3.28 16 15 H 0.09 2.41 7.47 -2.39 -0.02 2.39 16 16 N -0.70 -14.72 5.26 -440.04 -2.32 -17.04 16 17 C 0.51 11.82 7.59 87.66 0.67 12.48 16 18 O -0.58 -18.43 14.28 -3.01 -0.04 -18.47 16 19 C -0.13 -1.94 5.12 29.85 0.15 -1.78 16 20 C -0.06 -0.99 2.54 -10.86 -0.03 -1.02 16 21 H 0.07 1.46 8.01 -2.39 -0.02 1.44 16 22 C -0.16 -3.30 9.19 26.26 0.24 -3.06 16 23 C -0.18 -2.84 10.77 26.26 0.28 -2.55 16 24 C -0.10 -1.26 6.81 30.54 0.21 -1.05 16 25 C -0.12 -1.42 6.71 31.71 0.21 -1.20 16 26 C -0.12 -2.57 7.39 31.12 0.23 -2.34 16 27 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.37 20.34 7.67 -92.71 -0.71 19.63 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.02 0.73 7.84 -2.38 -0.02 0.71 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 2.57 7.89 -2.39 -0.02 2.55 16 33 H 0.41 6.54 8.70 -92.71 -0.81 5.73 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 2.49 7.31 -2.91 -0.02 2.47 16 37 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.82 7.91 -2.38 -0.02 0.80 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -71.48 350.55 1.69 -69.78 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.52 Total: 32.02 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 4.19 Total: -15.01 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -3.96 Total: -116.91 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.04 Total: -18.47 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -71.48 1.69 -69.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506874741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.496 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds