Wall clock time and date at job start Mon Mar 30 2020 23:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47239 * 93.31762 * 3 2 1 5 5 C 1.53004 * 109.47452 * 59.99378 * 4 3 2 6 6 N 1.46895 * 109.47211 * 180.02562 * 5 4 3 7 7 C 1.47961 * 111.00270 * 170.00151 * 6 5 4 8 8 C 1.53934 * 86.18427 * 222.41862 * 7 6 5 9 9 O 1.42895 * 113.73076 * 269.25870 * 8 7 6 10 10 C 1.50696 * 113.73266 * 138.07361 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47958 * 110.99863 * 70.64272 * 6 5 4 19 19 C 1.53001 * 109.46703 * 213.31507 * 3 2 1 20 20 C 1.52995 * 109.47589 * 60.00078 * 19 3 2 21 21 C 1.52998 * 109.47030 * 59.99517 * 20 19 3 22 22 C 1.52991 * 109.47408 * 300.00531 * 21 20 19 23 23 C 1.52995 * 109.47459 * 59.99731 * 22 21 20 24 24 H 1.09005 * 109.46956 * 299.99773 * 4 3 2 25 25 H 1.08995 * 109.47356 * 179.97438 * 4 3 2 26 26 H 1.09005 * 109.46718 * 60.00249 * 5 4 3 27 27 H 1.08999 * 109.46778 * 300.00702 * 5 4 3 28 28 H 1.08996 * 113.76309 * 108.09300 * 7 6 5 29 29 H 1.09009 * 113.75512 * 336.73575 * 7 6 5 30 30 H 0.96697 * 114.00066 * 178.10080 * 9 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 32 32 H 1.08993 * 113.76569 * 23.26601 * 18 6 5 33 33 H 1.09005 * 113.75789 * 251.89882 * 18 6 5 34 34 H 1.09001 * 109.47356 * 180.02562 * 19 3 2 35 35 H 1.09006 * 109.47365 * 299.99995 * 19 3 2 36 36 H 1.09010 * 109.47045 * 300.00344 * 20 19 3 37 37 H 1.08995 * 109.47413 * 180.02562 * 20 19 3 38 38 H 1.09006 * 109.47125 * 180.02562 * 21 20 19 39 39 H 1.09006 * 109.47003 * 60.00647 * 21 20 19 40 40 H 1.09001 * 109.47407 * 299.99368 * 22 21 20 41 41 H 1.09006 * 109.47444 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47595 * 179.97438 * 23 22 21 43 43 H 1.09008 * 109.47436 * 60.00031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0844 -1.4400 5 6 2.6073 1.3730 -2.0879 6 7 3.0965 1.4530 -3.4707 7 6 2.4356 2.5550 -4.2041 8 6 2.3321 1.5708 -5.3832 9 8 3.4491 1.6199 -6.2730 10 6 1.0074 1.6201 -6.0999 11 1 0.2401 2.3048 -5.7700 12 6 0.7754 0.7918 -7.1776 13 7 -0.3805 0.8352 -7.8034 14 14 2.1029 -0.3918 -7.7485 15 1 2.9585 0.2755 -8.7624 16 1 2.9358 -0.7986 -6.5883 17 1 1.4697 -1.5935 -8.3488 18 6 2.4250 0.4525 -4.3294 19 6 3.1174 1.2064 0.7923 20 6 2.6074 1.1228 2.2324 21 6 3.1180 -0.1658 2.8802 22 6 2.6087 -1.3715 2.0879 23 6 3.1186 -1.2879 0.6479 24 1 2.7551 -0.7746 -2.0045 25 1 4.2079 0.0853 -1.4400 26 1 2.9703 2.2319 -1.5235 27 1 1.5173 1.3724 -2.0878 28 1 3.0877 3.4064 -4.3986 29 1 1.4707 2.8436 -3.7869 30 1 3.4019 0.9829 -6.9990 31 1 -0.5435 0.2528 -8.5618 32 1 1.4572 0.1260 -3.9490 33 1 3.0690 -0.3762 -4.6241 34 1 4.2074 1.2072 0.7920 35 1 2.7536 2.1245 0.3308 36 1 1.5173 1.1222 2.2323 37 1 2.9699 1.9820 2.7966 38 1 2.7543 -0.2256 3.9060 39 1 4.2081 -0.1653 2.8802 40 1 1.5186 -1.3721 2.0879 41 1 2.9728 -2.2895 2.5492 42 1 2.7561 -2.1471 0.0835 43 1 4.2087 -1.2874 0.6478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559779871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:50 Heat of formation + Delta-G solvation = 2.865607 kcal Electronic energy + Delta-G solvation = -22332.866343 eV Core-core repulsion = 19185.779447 eV Total energy + Delta-G solvation = -3147.086896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20199 -39.12382 -35.80162 -35.19056 -33.39073 -32.41561 -31.19433 -29.56188 -26.88324 -25.41680 -24.61841 -23.06139 -22.76325 -21.27277 -20.39432 -19.09598 -17.32358 -16.69066 -16.24039 -15.81355 -15.24865 -15.09930 -14.58736 -14.51206 -13.90889 -13.75211 -13.56522 -13.26325 -13.11953 -12.90148 -12.73568 -12.42155 -12.18400 -12.10382 -12.05639 -11.85207 -11.54456 -11.44466 -11.34345 -10.91831 -10.88712 -10.81237 -10.54053 -10.48208 -10.27569 -10.05188 -9.97246 -9.27794 -8.88061 -8.58398 -8.03310 -6.31855 -4.35959 2.81824 2.84881 3.07141 3.13010 3.21876 3.78904 4.13533 4.31372 4.41582 4.48127 4.63824 4.79382 4.84555 4.90983 5.09431 5.13538 5.19423 5.26453 5.34406 5.39164 5.45684 5.58629 5.64195 5.72333 5.77575 5.78443 5.83924 5.87566 5.89045 5.95329 6.00952 6.09797 6.12464 6.20234 6.30982 6.45822 6.61081 6.90552 6.94356 7.35041 7.62306 7.73306 8.15388 8.68621 8.70783 9.27381 10.80948 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.004171 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.708948 B = 6710.844177 C = 6826.608283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.219 3.781 3 C 0.041 3.959 4 C -0.104 4.104 5 C 0.014 3.986 6 N -0.476 5.476 7 C 0.023 3.977 8 C 0.201 3.799 9 O -0.551 6.551 10 C -0.538 4.538 11 H 0.084 0.916 12 C 0.077 3.923 13 N -0.883 5.883 14 Si 0.861 3.139 15 H -0.268 1.268 16 H -0.253 1.253 17 H -0.286 1.286 18 C -0.030 4.030 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.107 4.107 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.347 0.653 31 H 0.269 0.731 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.157 -3.526 18.825 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.099 4.099 3 C 0.037 3.963 4 C -0.142 4.142 5 C -0.115 4.115 6 N -0.198 5.198 7 C -0.105 4.105 8 C 0.160 3.840 9 O -0.361 6.361 10 C -0.575 4.575 11 H 0.102 0.898 12 C -0.127 4.127 13 N -0.519 5.519 14 Si 0.690 3.310 15 H -0.194 1.194 16 H -0.178 1.178 17 H -0.213 1.213 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.163 4.163 21 C -0.156 4.156 22 C -0.163 4.163 23 C -0.145 4.145 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.199 0.801 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.187 -3.141 19.165 21.484 hybrid contribution -0.291 -1.133 -0.772 1.402 sum 8.896 -4.275 18.393 20.874 Atomic orbital electron populations 1.81222 1.12811 1.08241 1.08809 1.29001 0.94893 0.93263 0.92730 1.18443 0.81698 0.98209 0.97943 1.21629 1.02332 0.99092 0.91180 1.22748 0.97863 0.97635 0.93293 1.68540 1.46761 1.05063 0.99439 1.23998 0.97339 0.95708 0.93454 1.20450 0.85374 0.91130 0.87019 1.86460 1.46425 1.62215 1.41015 1.21413 0.98368 1.23192 1.14575 0.89754 1.25020 0.95486 0.96413 0.95801 1.69882 1.22623 1.38496 1.20913 0.87290 0.82219 0.81432 0.80089 1.19402 1.17847 1.21329 1.25002 0.97055 0.97558 0.96306 1.21712 1.01894 0.96549 0.94603 1.21614 1.00905 0.98056 0.95726 1.21543 1.00973 0.94327 0.98791 1.21603 1.00925 0.98548 0.95180 1.21635 1.01830 0.95350 0.95689 0.90925 0.89044 0.90674 0.94595 0.90029 0.91000 0.80117 0.92123 0.91165 0.90844 0.89519 0.90575 0.92234 0.91293 0.92028 0.91434 0.92206 0.91333 0.90939 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.23 18.54 42.15 0.78 -6.45 16 2 C 0.22 2.98 10.09 -20.76 -0.21 2.77 16 3 C 0.04 0.42 0.51 -157.30 -0.08 0.34 16 4 C -0.10 -1.24 4.31 -26.73 -0.12 -1.36 16 5 C 0.01 0.20 4.21 -3.82 -0.02 0.19 16 6 N -0.48 -8.99 6.26 -238.22 -1.49 -10.48 16 7 C 0.02 0.49 7.36 -2.77 -0.02 0.47 16 8 C 0.20 4.85 1.05 -90.84 -0.10 4.75 16 9 O -0.55 -13.58 13.32 -35.23 -0.47 -14.05 16 10 C -0.54 -14.96 9.20 -34.44 -0.32 -15.28 16 11 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 12 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.88 -26.22 13.96 55.43 0.77 -25.45 16 14 Si 0.86 20.17 24.34 -169.99 -4.14 16.03 16 15 H -0.27 -6.06 7.06 56.52 0.40 -5.66 16 16 H -0.25 -5.60 5.28 56.52 0.30 -5.30 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 18 C -0.03 -0.64 5.70 -2.76 -0.02 -0.65 16 19 C -0.11 -0.92 4.35 -26.73 -0.12 -1.04 16 20 C -0.13 -0.99 5.70 -26.73 -0.15 -1.15 16 21 C -0.12 -0.81 5.92 -26.74 -0.16 -0.97 16 22 C -0.12 -0.96 5.70 -26.74 -0.15 -1.12 16 23 C -0.11 -0.86 4.71 -26.74 -0.13 -0.98 16 24 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 27 H 0.04 0.61 6.77 -51.93 -0.35 0.26 16 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.07 1.47 7.74 -51.92 -0.40 1.07 16 30 H 0.35 8.23 3.31 45.56 0.15 8.38 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.53 7.73 -51.93 -0.40 1.13 16 33 H 0.07 1.54 6.98 -51.93 -0.36 1.18 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.06 0.58 7.23 -51.92 -0.38 0.20 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.57 7.23 -51.93 -0.38 0.19 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -31.31 327.19 -7.93 -39.24 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.64 Total: 8.19 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.67 Total: -11.96 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.06 Total: -42.38 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.47 Total: -14.05 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.14 Total: 16.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.31 -7.93 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559779871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.104 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds