Wall clock time and date at job start Mon Mar 30 2020 23:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47239 * 93.31762 * 3 2 1 5 5 C 1.53004 * 109.47452 * 59.99378 * 4 3 2 6 6 N 1.46895 * 109.47211 * 180.02562 * 5 4 3 7 7 C 1.47961 * 111.00270 * 170.00151 * 6 5 4 8 8 C 1.53934 * 86.18427 * 222.41862 * 7 6 5 9 9 O 1.42895 * 113.73076 * 269.25870 * 8 7 6 10 10 C 1.50696 * 113.73266 * 138.07361 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47958 * 110.99863 * 70.64272 * 6 5 4 19 19 C 1.53001 * 109.46703 * 213.31507 * 3 2 1 20 20 C 1.52995 * 109.47589 * 60.00078 * 19 3 2 21 21 C 1.52998 * 109.47030 * 59.99517 * 20 19 3 22 22 C 1.52991 * 109.47408 * 300.00531 * 21 20 19 23 23 C 1.52995 * 109.47459 * 59.99731 * 22 21 20 24 24 H 1.09005 * 109.46956 * 299.99773 * 4 3 2 25 25 H 1.08995 * 109.47356 * 179.97438 * 4 3 2 26 26 H 1.09005 * 109.46718 * 60.00249 * 5 4 3 27 27 H 1.08999 * 109.46778 * 300.00702 * 5 4 3 28 28 H 1.08996 * 113.76309 * 108.09300 * 7 6 5 29 29 H 1.09009 * 113.75512 * 336.73575 * 7 6 5 30 30 H 0.96697 * 114.00066 * 178.10080 * 9 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 32 32 H 1.08993 * 113.76569 * 23.26601 * 18 6 5 33 33 H 1.09005 * 113.75789 * 251.89882 * 18 6 5 34 34 H 1.09001 * 109.47356 * 180.02562 * 19 3 2 35 35 H 1.09006 * 109.47365 * 299.99995 * 19 3 2 36 36 H 1.09010 * 109.47045 * 300.00344 * 20 19 3 37 37 H 1.08995 * 109.47413 * 180.02562 * 20 19 3 38 38 H 1.09006 * 109.47125 * 180.02562 * 21 20 19 39 39 H 1.09006 * 109.47003 * 60.00647 * 21 20 19 40 40 H 1.09001 * 109.47407 * 299.99368 * 22 21 20 41 41 H 1.09006 * 109.47444 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47595 * 179.97438 * 23 22 21 43 43 H 1.09008 * 109.47436 * 60.00031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0844 -1.4400 5 6 2.6073 1.3730 -2.0879 6 7 3.0965 1.4530 -3.4707 7 6 2.4356 2.5550 -4.2041 8 6 2.3321 1.5708 -5.3832 9 8 3.4491 1.6199 -6.2730 10 6 1.0074 1.6201 -6.0999 11 1 0.2401 2.3048 -5.7700 12 6 0.7754 0.7918 -7.1776 13 7 -0.3805 0.8352 -7.8034 14 14 2.1029 -0.3918 -7.7485 15 1 2.9585 0.2755 -8.7624 16 1 2.9358 -0.7986 -6.5883 17 1 1.4697 -1.5935 -8.3488 18 6 2.4250 0.4525 -4.3294 19 6 3.1174 1.2064 0.7923 20 6 2.6074 1.1228 2.2324 21 6 3.1180 -0.1658 2.8802 22 6 2.6087 -1.3715 2.0879 23 6 3.1186 -1.2879 0.6479 24 1 2.7551 -0.7746 -2.0045 25 1 4.2079 0.0853 -1.4400 26 1 2.9703 2.2319 -1.5235 27 1 1.5173 1.3724 -2.0878 28 1 3.0877 3.4064 -4.3986 29 1 1.4707 2.8436 -3.7869 30 1 3.4019 0.9829 -6.9990 31 1 -0.5435 0.2528 -8.5618 32 1 1.4572 0.1260 -3.9490 33 1 3.0690 -0.3762 -4.6241 34 1 4.2074 1.2072 0.7920 35 1 2.7536 2.1245 0.3308 36 1 1.5173 1.1222 2.2323 37 1 2.9699 1.9820 2.7966 38 1 2.7543 -0.2256 3.9060 39 1 4.2081 -0.1653 2.8802 40 1 1.5186 -1.3721 2.0879 41 1 2.9728 -2.2895 2.5492 42 1 2.7561 -2.1471 0.0835 43 1 4.2087 -1.2874 0.6478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559779871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:49 Heat of formation + Delta-G solvation = -21.089485 kcal Electronic energy + Delta-G solvation = -22333.905114 eV Core-core repulsion = 19185.779447 eV Total energy + Delta-G solvation = -3148.125667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36143 -40.45482 -36.90759 -36.82733 -34.58034 -34.44615 -31.82382 -30.84661 -28.53747 -27.12718 -25.93830 -23.95487 -23.67163 -22.38698 -21.24282 -20.88928 -19.36735 -18.15534 -17.48224 -17.17215 -16.53333 -16.13610 -15.75423 -15.47662 -15.35010 -15.04634 -14.87158 -14.67179 -14.46425 -14.12428 -14.03386 -13.83820 -13.43497 -13.32273 -13.02806 -12.93565 -12.66995 -12.62331 -12.51365 -12.34278 -12.11760 -11.99246 -11.95172 -11.76894 -11.41630 -11.18214 -11.02934 -10.87577 -10.85096 -10.46713 -9.71048 -8.47520 -6.58656 1.20038 1.26353 1.36382 1.76112 1.77667 2.14827 2.76016 2.86321 2.95669 3.45569 3.63720 3.76087 3.84459 3.97619 4.09440 4.11806 4.14970 4.26554 4.35629 4.44963 4.50338 4.58120 4.61678 4.64135 4.76727 4.78825 4.88352 4.91811 4.98743 5.10779 5.13682 5.17432 5.18803 5.25716 5.25843 5.30500 5.38886 5.41109 5.45646 5.53980 5.98972 6.16332 6.45971 6.57538 6.75338 7.09543 8.69045 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.004171 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.708948 B = 6710.844177 C = 6826.608283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.239 3.761 3 C 0.044 3.956 4 C -0.097 4.097 5 C 0.012 3.988 6 N -0.460 5.460 7 C 0.026 3.974 8 C 0.184 3.816 9 O -0.553 6.553 10 C -0.554 4.554 11 H 0.040 0.960 12 C 0.019 3.981 13 N -0.933 5.933 14 Si 0.926 3.074 15 H -0.250 1.250 16 H -0.229 1.229 17 H -0.284 1.284 18 C -0.018 4.018 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.104 4.104 24 H 0.059 0.941 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.009 0.991 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.350 0.650 31 H 0.272 0.728 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.031 0.969 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 -4.624 20.340 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.078 4.078 3 C 0.040 3.960 4 C -0.136 4.136 5 C -0.117 4.117 6 N -0.182 5.182 7 C -0.103 4.103 8 C 0.143 3.857 9 O -0.363 6.363 10 C -0.591 4.591 11 H 0.058 0.942 12 C -0.181 4.181 13 N -0.571 5.571 14 Si 0.750 3.250 15 H -0.175 1.175 16 H -0.153 1.153 17 H -0.210 1.210 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.163 4.163 21 C -0.153 4.153 22 C -0.163 4.163 23 C -0.142 4.142 24 H 0.078 0.922 25 H 0.139 0.861 26 H 0.119 0.881 27 H 0.027 0.973 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.202 0.798 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.276 -4.226 20.702 24.954 hybrid contribution -1.650 -0.691 -1.202 2.155 sum 11.626 -4.917 19.500 23.229 Atomic orbital electron populations 1.81222 1.15027 1.10526 1.10935 1.29871 0.95769 0.91305 0.90814 1.18741 0.79061 1.00663 0.97518 1.21616 1.03929 0.96475 0.91533 1.22878 0.96462 1.00783 0.91539 1.68494 1.45812 1.02966 1.00953 1.23939 0.97654 0.96238 0.92433 1.20595 0.83439 0.94193 0.87471 1.86449 1.45893 1.62682 1.41320 1.21637 0.99517 1.22504 1.15484 0.94188 1.25969 0.98060 0.98362 0.95708 1.70039 1.25195 1.40001 1.21837 0.86218 0.79390 0.78751 0.80639 1.17490 1.15269 1.21046 1.24744 0.96952 0.97423 0.95621 1.21784 1.03699 0.94905 0.94226 1.21618 0.99193 0.99550 0.95946 1.21548 1.02298 0.92911 0.98499 1.21615 0.99233 0.99972 0.95476 1.21699 1.03666 0.93533 0.95301 0.92188 0.86066 0.88133 0.97252 0.88866 0.91676 0.79755 0.91863 0.92614 0.89636 0.86269 0.91577 0.95097 0.89799 0.91814 0.89028 0.95053 0.89651 0.91480 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.43 18.54 20.01 0.37 -17.06 16 2 C 0.24 6.54 10.09 89.44 0.90 7.44 16 3 C 0.04 0.79 0.51 -53.99 -0.03 0.76 16 4 C -0.10 -2.03 4.31 30.59 0.13 -1.90 16 5 C 0.01 0.34 4.21 86.31 0.36 0.70 16 6 N -0.46 -16.41 6.26 -910.80 -5.70 -22.11 16 7 C 0.03 1.07 7.36 86.41 0.64 1.71 16 8 C 0.18 8.77 1.05 -10.89 -0.01 8.76 16 9 O -0.55 -26.12 13.32 -148.98 -1.98 -28.10 16 10 C -0.55 -31.85 9.20 25.60 0.24 -31.62 16 11 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 12 C 0.02 1.07 5.47 84.66 0.46 1.54 16 13 N -0.93 -57.37 13.96 21.45 0.30 -57.07 16 14 Si 0.93 41.09 24.34 68.60 1.67 42.76 16 15 H -0.25 -10.35 7.06 99.48 0.70 -9.65 16 16 H -0.23 -9.18 5.28 99.48 0.52 -8.65 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 C -0.02 -0.74 5.70 86.41 0.49 -0.25 16 19 C -0.11 -1.46 4.35 30.59 0.13 -1.32 16 20 C -0.13 -1.69 5.70 30.59 0.17 -1.52 16 21 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 22 C -0.13 -1.62 5.70 30.59 0.17 -1.45 16 23 C -0.10 -1.31 4.71 30.59 0.14 -1.17 16 24 H 0.06 1.44 7.54 -2.38 -0.02 1.42 16 25 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 2.38 6.43 -2.38 -0.02 2.36 16 27 H 0.01 0.31 6.77 -2.39 -0.02 0.30 16 28 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 29 H 0.07 2.73 7.74 -2.38 -0.02 2.72 16 30 H 0.35 15.66 3.31 -74.06 -0.25 15.42 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.06 2.45 7.73 -2.39 -0.02 2.44 16 33 H 0.09 3.34 6.98 -2.38 -0.02 3.32 16 34 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.04 6.43 -2.38 -0.02 1.02 16 36 H 0.03 0.59 7.23 -2.38 -0.02 0.57 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.03 0.58 7.23 -2.39 -0.02 0.56 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -71.79 327.19 -0.79 -72.57 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.57 Total: 28.33 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.99 Total: -19.33 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -5.03 Total: -96.23 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.98 Total: -28.10 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.67 Total: 42.76 kcal Total: -71.79 -0.79 -72.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559779871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.484 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds