Wall clock time and date at job start Tue Mar 31 2020 00:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99424 * 2 1 4 4 H 1.48498 * 109.47274 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.47411 * 30.00343 * 3 2 1 6 6 H 1.48507 * 109.47028 * 150.00289 * 3 2 1 7 7 C 1.37875 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45477 * 180.02562 * 9 7 2 11 11 C 1.53200 * 109.30812 * 178.62719 * 10 9 7 12 12 N 1.46928 * 108.77457 * 54.63623 * 11 10 9 13 13 C 1.34776 * 120.63209 * 126.36905 * 12 11 10 14 14 O 1.21283 * 119.99927 * 4.95138 * 13 12 11 15 15 C 1.50703 * 119.99709 * 184.95152 * 13 12 11 16 16 H 1.08999 * 110.54838 * 40.80552 * 15 13 12 17 17 C 1.54836 * 110.74214 * 163.75665 * 15 13 12 18 18 C 1.55851 * 103.51648 * 118.57232 * 17 15 13 19 19 H 1.09005 * 116.15194 * 159.22721 * 18 17 15 20 20 C 1.55846 * 105.03495 * 288.27100 * 18 17 15 21 21 C 1.54841 * 103.51750 * 71.72564 * 20 18 17 22 22 C 1.55848 * 103.51977 * 0.02562 * 21 20 18 23 23 H 1.08995 * 115.57939 * 159.64487 * 22 21 20 24 24 N 1.50645 * 101.02713 * 32.98860 * 22 21 20 25 25 C 1.46932 * 118.73734 * 306.63808 * 12 11 10 26 26 C 1.52769 * 109.00700 * 53.31309 * 25 12 11 27 27 H 0.96992 * 120.00368 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.45943 * 299.97353 * 9 7 2 29 29 H 1.08994 * 109.50111 * 58.68044 * 10 9 7 30 30 H 1.09000 * 109.49631 * 298.57443 * 10 9 7 31 31 H 1.08994 * 109.58466 * 294.84515 * 11 10 9 32 32 H 1.08999 * 109.70390 * 174.48798 * 11 10 9 33 33 H 1.09000 * 110.61478 * 237.07750 * 17 15 13 34 34 H 1.08998 * 110.61805 * 0.06802 * 17 15 13 35 35 H 1.08998 * 110.61308 * 313.22441 * 20 18 17 36 36 H 1.09001 * 110.75092 * 190.29605 * 20 18 17 37 37 H 1.08998 * 110.61471 * 241.49106 * 21 20 18 38 38 H 1.09006 * 110.74115 * 118.57596 * 21 20 18 39 39 H 1.00904 * 111.00094 * 62.35563 * 24 22 21 40 40 H 1.09002 * 109.58617 * 173.14703 * 25 12 11 41 41 H 1.08997 * 109.58729 * 293.57664 * 25 12 11 42 42 H 1.08993 * 109.56043 * 185.55330 * 26 25 12 43 43 H 1.08992 * 109.35825 * 65.49489 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2460 -3.6621 -0.0005 11 6 1.4770 -4.9866 0.0341 12 7 0.5228 -5.0087 -1.0829 13 6 0.5127 -6.0344 -1.9572 14 8 1.2333 -6.9929 -1.7759 15 6 -0.3942 -5.9902 -3.1601 16 1 -0.4036 -4.9911 -3.5956 17 6 0.0397 -7.0395 -4.2127 18 6 -1.1996 -7.9781 -4.3237 19 1 -1.2720 -8.5725 -5.2345 20 6 -1.2164 -8.7849 -2.9905 21 6 -1.6501 -7.7355 -1.9378 22 6 -1.8381 -6.4350 -2.7758 23 1 -2.4613 -5.6666 -2.3186 24 7 -2.3230 -7.0028 -4.0842 25 6 -0.4162 -3.8885 -1.2322 26 6 0.3703 -2.5790 -1.2495 27 1 -0.4850 0.8399 0.0004 28 1 0.6252 -2.5571 0.8900 29 1 2.8884 -3.5914 0.8772 30 1 2.8560 -3.6190 -0.9029 31 1 0.9375 -5.0713 0.9774 32 1 2.1739 -5.8189 -0.0642 33 1 0.2452 -6.5605 -5.1700 34 1 0.9112 -7.5943 -3.8651 35 1 -0.2223 -9.1693 -2.7621 36 1 -1.9392 -9.5992 -3.0410 37 1 -0.8711 -7.5998 -1.1876 38 1 -2.5887 -8.0269 -1.4663 39 1 -3.2015 -7.4847 -3.9658 40 1 -0.9664 -3.9950 -2.1672 41 1 -1.1132 -3.8818 -0.3943 42 1 -0.3223 -1.7375 -1.2606 43 1 0.9979 -2.5462 -2.1399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:00 Heat of formation + Delta-G solvation = -23.554650 kcal Electronic energy + Delta-G solvation = -23006.253099 eV Core-core repulsion = 19858.020535 eV Total energy + Delta-G solvation = -3148.232564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12640 -38.80326 -36.69680 -33.53729 -31.72041 -30.67089 -30.06401 -29.56251 -29.36408 -26.22792 -23.65204 -22.58869 -21.94679 -21.04959 -20.24559 -19.14720 -18.04748 -17.12118 -16.91671 -16.20196 -15.55167 -15.26109 -14.55774 -14.28713 -14.13988 -13.22131 -13.14445 -13.04548 -12.69585 -12.60896 -12.38912 -12.21955 -12.06104 -11.75587 -11.53774 -11.48149 -11.25935 -10.96514 -10.94367 -10.84884 -10.64679 -10.39810 -10.11622 -10.08463 -9.67302 -9.36374 -9.19454 -8.94938 -8.90728 -8.39881 -8.00777 -6.04912 -4.11069 2.93030 3.27314 3.34528 3.37745 3.42485 4.01030 4.39603 4.46643 4.60221 4.79484 4.89150 5.07511 5.16332 5.17686 5.24685 5.27980 5.46724 5.57312 5.66119 5.78240 5.81730 5.87549 5.92176 5.97612 6.06042 6.09489 6.13163 6.13809 6.24005 6.31545 6.42629 6.45610 6.64135 6.87801 7.02213 7.12807 7.13573 7.26088 7.64647 7.89744 7.92994 8.02279 8.38297 8.56202 8.92305 9.54275 11.00631 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.004356 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.733729 B = 6427.040554 C = 6758.050463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.598 5.598 13 C 0.522 3.478 14 O -0.558 6.558 15 C -0.107 4.107 16 H 0.101 0.899 17 C -0.102 4.102 18 C 0.048 3.952 19 H 0.113 0.887 20 C -0.150 4.150 21 C -0.161 4.161 22 C 0.064 3.936 23 H 0.119 0.881 24 N -0.647 5.647 25 C 0.102 3.898 26 C -0.125 4.125 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.331 0.669 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -13.425 -5.930 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.329 5.329 13 C 0.310 3.690 14 O -0.438 6.438 15 C -0.129 4.129 16 H 0.119 0.881 17 C -0.141 4.141 18 C -0.061 4.061 19 H 0.131 0.869 20 C -0.189 4.189 21 C -0.200 4.200 22 C -0.047 4.047 23 H 0.137 0.863 24 N -0.274 5.274 25 C -0.020 4.020 26 C -0.164 4.164 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.871 -13.181 -6.341 15.417 hybrid contribution 0.233 0.385 0.774 0.895 sum -4.637 -12.796 -5.567 14.705 Atomic orbital electron populations 1.69829 1.05844 1.26488 1.50930 1.24950 0.94865 0.99040 0.95043 0.86620 0.79914 0.83521 0.78103 1.20717 1.21243 1.19972 1.21207 0.92951 0.90586 1.50309 0.92723 1.18630 0.92632 0.91720 0.93973 1.22007 0.98920 0.94254 1.00948 1.21691 0.91755 0.99609 0.88010 1.48241 1.35931 1.20988 1.27745 1.20273 0.82945 0.82037 0.83726 1.90602 1.43895 1.33315 1.75960 1.22304 0.94136 1.01798 0.94659 0.88079 1.22592 0.97662 0.95944 0.97858 1.24305 0.92032 0.92748 0.97051 0.86879 1.23282 1.02416 0.97742 0.95419 1.23444 1.01892 0.95568 0.99129 1.24184 0.94093 0.96606 0.89798 0.86290 1.65970 1.04341 1.29096 1.27960 1.22007 0.91745 0.87501 1.00790 1.21952 1.00130 0.94717 0.99574 0.92963 0.95487 0.92176 0.92996 0.92346 0.90473 0.90996 0.89261 0.90323 0.92139 0.90070 0.91802 0.85475 0.91183 0.91976 0.87704 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 11.31 55.43 0.63 -23.58 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.55 8.56 -34.44 -0.29 -13.84 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 10 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 11 C 0.11 2.02 6.42 -3.71 -0.02 2.00 16 12 N -0.60 -10.47 2.98 -173.02 -0.52 -10.99 16 13 C 0.52 8.79 5.25 -10.98 -0.06 8.74 16 14 O -0.56 -10.57 14.00 5.56 0.08 -10.50 16 15 C -0.11 -1.50 2.24 -89.25 -0.20 -1.70 16 16 H 0.10 1.45 6.88 -51.93 -0.36 1.09 16 17 C -0.10 -1.31 5.99 -24.24 -0.15 -1.46 16 18 C 0.05 0.52 5.59 -62.54 -0.35 0.17 16 19 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.15 -1.66 6.33 -24.24 -0.15 -1.81 16 21 C -0.16 -1.97 6.04 -24.24 -0.15 -2.11 16 22 C 0.06 0.77 4.93 -62.54 -0.31 0.46 16 23 H 0.12 1.37 7.78 -51.93 -0.40 0.97 16 24 N -0.65 -7.11 7.71 -88.18 -0.68 -7.79 16 25 C 0.10 1.77 6.18 -3.93 -0.02 1.75 16 26 C -0.13 -2.71 5.14 -26.83 -0.14 -2.85 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.39 7.03 -51.93 -0.37 1.03 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.27 6.36 -51.93 -0.33 0.94 16 35 H 0.08 0.99 7.82 -51.93 -0.41 0.59 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.21 5.67 -51.93 -0.29 0.91 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.33 3.08 8.66 -39.29 -0.34 2.74 16 40 H 0.07 1.07 5.09 -51.93 -0.26 0.80 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 2.53 6.03 -51.93 -0.31 2.22 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -28.06 320.99 -9.78 -37.85 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.84 Total: 5.26 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.27 Total: -10.79 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.57 Total: -42.37 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.06 -9.78 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.292 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds