Wall clock time and date at job start Tue Mar 31 2020 00:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99424 * 2 1 4 4 H 1.48498 * 109.47274 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.47411 * 30.00343 * 3 2 1 6 6 H 1.48507 * 109.47028 * 150.00289 * 3 2 1 7 7 C 1.37875 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45477 * 180.02562 * 9 7 2 11 11 C 1.53200 * 109.30812 * 178.62719 * 10 9 7 12 12 N 1.46928 * 108.77457 * 54.63623 * 11 10 9 13 13 C 1.34776 * 120.63209 * 126.36905 * 12 11 10 14 14 O 1.21283 * 119.99927 * 4.95138 * 13 12 11 15 15 C 1.50703 * 119.99709 * 184.95152 * 13 12 11 16 16 H 1.08999 * 110.54838 * 40.80552 * 15 13 12 17 17 C 1.54836 * 110.74214 * 163.75665 * 15 13 12 18 18 C 1.55851 * 103.51648 * 118.57232 * 17 15 13 19 19 H 1.09005 * 116.15194 * 159.22721 * 18 17 15 20 20 C 1.55846 * 105.03495 * 288.27100 * 18 17 15 21 21 C 1.54841 * 103.51750 * 71.72564 * 20 18 17 22 22 C 1.55848 * 103.51977 * 0.02562 * 21 20 18 23 23 H 1.08995 * 115.57939 * 159.64487 * 22 21 20 24 24 N 1.50645 * 101.02713 * 32.98860 * 22 21 20 25 25 C 1.46932 * 118.73734 * 306.63808 * 12 11 10 26 26 C 1.52769 * 109.00700 * 53.31309 * 25 12 11 27 27 H 0.96992 * 120.00368 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.45943 * 299.97353 * 9 7 2 29 29 H 1.08994 * 109.50111 * 58.68044 * 10 9 7 30 30 H 1.09000 * 109.49631 * 298.57443 * 10 9 7 31 31 H 1.08994 * 109.58466 * 294.84515 * 11 10 9 32 32 H 1.08999 * 109.70390 * 174.48798 * 11 10 9 33 33 H 1.09000 * 110.61478 * 237.07750 * 17 15 13 34 34 H 1.08998 * 110.61805 * 0.06802 * 17 15 13 35 35 H 1.08998 * 110.61308 * 313.22441 * 20 18 17 36 36 H 1.09001 * 110.75092 * 190.29605 * 20 18 17 37 37 H 1.08998 * 110.61471 * 241.49106 * 21 20 18 38 38 H 1.09006 * 110.74115 * 118.57596 * 21 20 18 39 39 H 1.00904 * 111.00094 * 62.35563 * 24 22 21 40 40 H 1.09002 * 109.58617 * 173.14703 * 25 12 11 41 41 H 1.08997 * 109.58729 * 293.57664 * 25 12 11 42 42 H 1.08993 * 109.56043 * 185.55330 * 26 25 12 43 43 H 1.08992 * 109.35825 * 65.49489 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2460 -3.6621 -0.0005 11 6 1.4770 -4.9866 0.0341 12 7 0.5228 -5.0087 -1.0829 13 6 0.5127 -6.0344 -1.9572 14 8 1.2333 -6.9929 -1.7759 15 6 -0.3942 -5.9902 -3.1601 16 1 -0.4036 -4.9911 -3.5956 17 6 0.0397 -7.0395 -4.2127 18 6 -1.1996 -7.9781 -4.3237 19 1 -1.2720 -8.5725 -5.2345 20 6 -1.2164 -8.7849 -2.9905 21 6 -1.6501 -7.7355 -1.9378 22 6 -1.8381 -6.4350 -2.7758 23 1 -2.4613 -5.6666 -2.3186 24 7 -2.3230 -7.0028 -4.0842 25 6 -0.4162 -3.8885 -1.2322 26 6 0.3703 -2.5790 -1.2495 27 1 -0.4850 0.8399 0.0004 28 1 0.6252 -2.5571 0.8900 29 1 2.8884 -3.5914 0.8772 30 1 2.8560 -3.6190 -0.9029 31 1 0.9375 -5.0713 0.9774 32 1 2.1739 -5.8189 -0.0642 33 1 0.2452 -6.5605 -5.1700 34 1 0.9112 -7.5943 -3.8651 35 1 -0.2223 -9.1693 -2.7621 36 1 -1.9392 -9.5992 -3.0410 37 1 -0.8711 -7.5998 -1.1876 38 1 -2.5887 -8.0269 -1.4663 39 1 -3.2015 -7.4847 -3.9658 40 1 -0.9664 -3.9950 -2.1672 41 1 -1.1132 -3.8818 -0.3943 42 1 -0.3223 -1.7375 -1.2606 43 1 0.9979 -2.5462 -2.1399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:59 Heat of formation + Delta-G solvation = -40.708413 kcal Electronic energy + Delta-G solvation = -23006.996942 eV Core-core repulsion = 19858.020535 eV Total energy + Delta-G solvation = -3148.976407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24001 -40.10837 -38.24055 -35.33340 -33.31416 -32.11759 -31.40998 -30.51468 -30.37027 -28.01191 -25.18586 -24.12537 -23.32893 -22.09036 -21.44699 -20.53635 -19.36360 -18.60601 -18.04676 -17.88393 -16.86994 -16.56289 -16.38015 -15.50223 -15.35428 -14.89513 -14.65136 -14.51701 -14.09721 -13.95542 -13.60670 -13.52239 -13.18790 -13.16599 -12.84996 -12.73543 -12.66683 -12.53023 -12.43878 -12.16318 -11.95592 -11.92450 -11.78727 -11.47101 -11.04037 -11.01358 -10.94091 -10.62138 -10.38641 -9.80142 -9.53410 -8.07826 -6.20988 1.41476 1.43741 1.52327 1.60610 2.07536 2.44342 3.05159 3.18855 3.51055 3.62438 3.72680 3.89341 4.01634 4.11936 4.24931 4.25410 4.27975 4.32803 4.37646 4.47968 4.51892 4.58091 4.66984 4.78143 4.84442 4.88168 4.96099 4.99366 5.05513 5.12301 5.15807 5.18742 5.25809 5.28647 5.43658 5.49244 5.57319 5.65910 5.98444 6.13549 6.37856 6.39322 6.52884 6.88228 7.19453 7.46840 8.95631 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.004356 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.733729 B = 6427.040554 C = 6758.050463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.118 3.882 12 N -0.602 5.602 13 C 0.524 3.476 14 O -0.580 6.580 15 C -0.109 4.109 16 H 0.100 0.900 17 C -0.105 4.105 18 C 0.058 3.942 19 H 0.139 0.861 20 C -0.146 4.146 21 C -0.161 4.161 22 C 0.067 3.933 23 H 0.128 0.872 24 N -0.645 5.645 25 C 0.115 3.885 26 C -0.116 4.116 27 H 0.262 0.738 28 H 0.004 0.996 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.345 0.655 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -14.208 -6.978 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.151 4.151 11 C -0.005 4.005 12 N -0.334 5.334 13 C 0.313 3.687 14 O -0.461 6.461 15 C -0.131 4.131 16 H 0.118 0.882 17 C -0.144 4.144 18 C -0.052 4.052 19 H 0.156 0.844 20 C -0.185 4.185 21 C -0.200 4.200 22 C -0.043 4.043 23 H 0.146 0.854 24 N -0.273 5.273 25 C -0.007 4.007 26 C -0.155 4.155 27 H 0.071 0.929 28 H 0.022 0.978 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.039 -13.976 -7.396 16.926 hybrid contribution 0.632 0.615 1.117 1.424 sum -5.407 -13.361 -6.278 15.721 Atomic orbital electron populations 1.69936 1.06768 1.27159 1.51163 1.25605 0.95681 1.01852 0.94794 0.85722 0.78773 0.80006 0.78122 1.20317 1.20781 1.19821 1.21543 0.92875 0.92315 1.50706 0.93575 1.18599 0.93020 0.91864 0.93753 1.21851 0.98323 0.94421 1.00534 1.21559 0.91946 0.98081 0.88910 1.48265 1.35915 1.21289 1.27885 1.20760 0.82767 0.81206 0.83938 1.90592 1.44901 1.34098 1.76508 1.22355 0.94939 1.02281 0.93530 0.88195 1.22609 0.98138 0.96000 0.97624 1.24371 0.90731 0.92249 0.97837 0.84368 1.23254 1.01887 0.98109 0.95284 1.23421 1.01677 0.96128 0.98786 1.24200 0.92861 0.96807 0.90483 0.85399 1.65931 1.05018 1.29417 1.26910 1.21837 0.91099 0.85271 1.02469 1.21722 0.99449 0.96310 0.97998 0.92884 0.97821 0.91896 0.94058 0.91418 0.90293 0.90173 0.91106 0.92340 0.89926 0.93074 0.90119 0.83901 0.88492 0.91466 0.90110 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.91 11.31 21.45 0.24 -49.67 16 2 C 0.02 1.06 5.30 84.65 0.45 1.51 16 3 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -28.88 8.56 25.60 0.22 -28.66 16 8 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 9 C 0.05 2.21 2.07 -11.51 -0.02 2.19 16 10 C -0.11 -4.66 5.30 30.67 0.16 -4.49 16 11 C 0.12 4.24 6.42 86.36 0.55 4.80 16 12 N -0.60 -20.80 2.98 -819.69 -2.44 -23.24 16 13 C 0.52 17.31 5.25 87.66 0.46 17.77 16 14 O -0.58 -21.94 14.00 -3.04 -0.04 -21.98 16 15 C -0.11 -2.90 2.24 -9.91 -0.02 -2.92 16 16 H 0.10 2.69 6.88 -2.39 -0.02 2.67 16 17 C -0.11 -2.53 5.99 32.21 0.19 -2.34 16 18 C 0.06 1.07 5.59 46.14 0.26 1.33 16 19 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 20 C -0.15 -2.92 6.33 32.21 0.20 -2.72 16 21 C -0.16 -3.61 6.04 32.21 0.19 -3.41 16 22 C 0.07 1.46 4.93 46.17 0.23 1.69 16 23 H 0.13 2.58 7.78 -2.39 -0.02 2.56 16 24 N -0.65 -12.05 7.71 -432.91 -3.34 -15.39 16 25 C 0.12 3.93 6.18 86.22 0.53 4.47 16 26 C -0.12 -5.08 5.14 30.53 0.16 -4.93 16 27 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 28 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 2.84 7.03 -2.39 -0.02 2.82 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.98 6.36 -2.39 -0.02 1.97 16 35 H 0.06 1.42 7.82 -2.39 -0.02 1.40 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.47 5.67 -2.39 -0.01 1.46 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.34 5.09 8.66 -89.69 -0.78 4.31 16 40 H 0.10 2.79 5.09 -2.39 -0.01 2.78 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -60.43 320.99 0.24 -60.19 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.23 Total: 21.13 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 3.57 Total: -15.72 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -5.54 Total: -88.30 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.04 Total: -21.98 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.43 0.24 -60.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.477 kcal (2) G-P(sol) polarization free energy of solvation -60.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds