Wall clock time and date at job start Tue Mar 31 2020 00:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48502 * 109.46702 * 269.99790 * 3 2 1 5 5 H 1.48496 * 109.47291 * 149.99987 * 3 2 1 6 6 H 1.48494 * 109.47048 * 29.99292 * 3 2 1 7 7 C 1.37878 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00198 * 175.53165 * 7 2 1 9 9 C 1.50706 * 120.00025 * 355.52693 * 7 2 1 10 10 H 1.08996 * 109.49249 * 35.35144 * 9 7 2 11 11 C 1.53041 * 109.49648 * 155.41452 * 9 7 2 12 12 C 1.53043 * 109.53752 * 181.31872 * 11 9 7 13 13 C 1.53192 * 109.31085 * 298.63521 * 12 11 9 14 14 N 1.46926 * 108.77513 * 54.63337 * 13 12 11 15 15 C 1.34780 * 120.62977 * 126.37272 * 14 13 12 16 16 O 1.21276 * 120.00142 * 174.72886 * 15 14 13 17 17 C 1.50709 * 119.99718 * 354.72336 * 15 14 13 18 18 C 1.52350 * 115.88883 * 252.55024 * 17 15 14 19 19 C 1.51277 * 60.17505 * 253.85233 * 18 17 15 20 20 H 1.09002 * 116.45265 * 107.89223 * 19 18 17 21 21 C 1.52777 * 117.55180 * 249.54964 * 19 18 17 22 22 C 1.53070 * 109.83940 * 88.20704 * 21 19 18 23 23 C 1.53309 * 108.35166 * 308.35287 * 22 21 19 24 24 N 1.45860 * 114.62530 * 38.84772 * 17 15 14 25 25 C 1.46923 * 118.74289 * 306.38966 * 14 13 12 26 26 H 0.97004 * 119.99848 * 185.57495 * 1 2 3 27 27 H 1.09004 * 109.45824 * 301.33421 * 11 9 7 28 28 H 1.08993 * 109.46044 * 61.29707 * 11 9 7 29 29 H 1.09005 * 109.49416 * 58.58500 * 12 11 9 30 30 H 1.08991 * 109.49400 * 178.68039 * 12 11 9 31 31 H 1.09001 * 109.58548 * 174.41984 * 13 12 11 32 32 H 1.08999 * 109.58409 * 294.70319 * 13 12 11 33 33 H 1.08996 * 117.54010 * 0.91271 * 18 17 15 34 34 H 1.09010 * 117.52807 * 146.11977 * 18 17 15 35 35 H 1.09001 * 108.43099 * 328.62978 * 21 19 18 36 36 H 1.09004 * 110.17235 * 208.86102 * 21 19 18 37 37 H 1.09001 * 109.68670 * 188.63280 * 22 21 19 38 38 H 1.09002 * 109.69100 * 68.06513 * 22 21 19 39 39 H 1.09006 * 109.57603 * 313.88056 * 23 22 21 40 40 H 1.08999 * 109.57779 * 193.48327 * 23 22 21 41 41 H 1.00906 * 111.00242 * 41.38909 * 24 17 15 42 42 H 1.08999 * 109.58428 * 293.82597 * 25 14 13 43 43 H 1.08996 * 109.59130 * 173.40001 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 3.5466 1.4403 0.7000 6 1 1.4465 2.6527 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0821 -1.1955 -0.0723 9 6 1.2545 -2.4972 0.1029 10 1 0.3087 -2.4155 -0.4326 11 6 2.0942 -3.6194 -0.5116 12 6 1.3196 -4.9373 -0.4378 13 6 1.0487 -5.2842 1.0295 14 7 0.3686 -4.1480 1.6662 15 6 -0.7968 -4.3239 2.3200 16 8 -1.2999 -3.3993 2.9222 17 6 -1.4748 -5.6698 2.3026 18 6 -2.7340 -5.7693 1.4507 19 6 -2.8469 -5.7318 2.9588 20 1 -3.2364 -4.8114 3.3938 21 6 -3.2957 -7.0096 3.6658 22 6 -2.0795 -7.8844 3.9796 23 6 -1.2679 -8.0627 2.6912 24 7 -0.5680 -6.8084 2.3954 25 6 0.9828 -2.8164 1.5764 26 1 -0.4850 -0.8361 0.0816 27 1 2.3097 -3.3828 -1.5536 28 1 3.0295 -3.7166 0.0394 29 1 0.3729 -4.8330 -0.9678 30 1 1.9084 -5.7315 -0.8967 31 1 0.4132 -6.1680 1.0847 32 1 1.9922 -5.4801 1.5389 33 1 -3.0463 -4.8778 0.9070 34 1 -2.9311 -6.7184 0.9520 35 1 -3.9712 -7.5509 3.0034 36 1 -3.8151 -6.7640 4.5922 37 1 -2.4107 -8.8573 4.3427 38 1 -1.4638 -7.3993 4.7371 39 1 -1.9387 -8.3095 1.8682 40 1 -0.5410 -8.8638 2.8254 41 1 0.1629 -6.6347 3.0690 42 1 1.9212 -2.8087 2.1309 43 1 0.3040 -2.0720 1.9924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:26 Heat of formation + Delta-G solvation = -13.241206 kcal Electronic energy + Delta-G solvation = -23066.033976 eV Core-core repulsion = 19918.248636 eV Total energy + Delta-G solvation = -3147.785340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -40.83374 -38.52080 -36.75469 -33.77743 -33.47066 -32.24863 -31.53738 -29.60646 -26.05228 -25.44287 -24.52531 -23.10729 -21.80184 -21.56478 -20.41151 -19.26959 -18.68249 -17.21686 -16.39209 -15.90920 -15.23036 -14.92063 -14.53067 -14.21985 -13.94940 -13.78173 -13.73774 -13.66471 -13.23991 -12.94525 -12.79988 -12.36601 -12.13239 -11.91051 -11.46498 -11.36407 -11.27096 -10.91872 -10.79145 -10.73382 -10.50211 -10.34089 -10.12882 -10.09359 -9.93510 -9.32020 -9.20522 -8.67061 -8.30028 -8.14890 -7.83591 -6.32623 -4.06185 2.89564 3.42396 3.47420 3.51128 3.60032 3.64999 4.08722 4.52872 4.54768 4.60189 4.72248 4.76497 4.92705 5.03111 5.31844 5.38591 5.44186 5.49957 5.56035 5.63620 5.64056 5.72010 5.79888 5.87374 5.94245 5.96391 6.13065 6.22415 6.30528 6.42716 6.46452 6.61510 6.73136 6.77073 6.84489 6.96591 6.99537 7.17438 7.42606 7.59980 8.09315 8.23692 8.45814 8.70632 8.90049 9.67329 11.05135 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.004856 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.948497 B = 5764.393757 C = 6304.999450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.597 4.597 8 H 0.051 0.949 9 C 0.023 3.977 10 H 0.033 0.967 11 C -0.105 4.105 12 C -0.133 4.133 13 C 0.072 3.928 14 N -0.591 5.591 15 C 0.538 3.462 16 O -0.545 6.545 17 C 0.036 3.964 18 C -0.145 4.145 19 C -0.157 4.157 20 H 0.116 0.884 21 C -0.086 4.086 22 C -0.158 4.158 23 C 0.050 3.950 24 N -0.635 5.635 25 C 0.115 3.885 26 H 0.272 0.728 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.139 0.861 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.353 0.647 42 H 0.051 0.949 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 -18.334 4.885 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.184 4.184 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.636 4.636 8 H 0.069 0.931 9 C 0.004 3.996 10 H 0.051 0.949 11 C -0.143 4.143 12 C -0.171 4.171 13 C -0.051 4.051 14 N -0.322 5.322 15 C 0.323 3.677 16 O -0.422 6.422 17 C -0.059 4.059 18 C -0.183 4.183 19 C -0.178 4.178 20 H 0.134 0.866 21 C -0.123 4.123 22 C -0.197 4.197 23 C -0.079 4.079 24 N -0.265 5.265 25 C -0.006 4.006 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.173 0.827 42 H 0.069 0.931 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.307 -16.292 4.466 17.214 hybrid contribution 0.152 -1.476 0.870 1.721 sum -3.155 -17.768 5.336 18.819 Atomic orbital electron populations 1.70743 1.06862 1.31354 1.45167 1.25860 0.96499 1.02685 0.93347 0.83546 0.74715 0.75216 0.76741 1.21474 1.21417 1.21010 1.21896 0.94496 0.91255 1.55912 0.93102 1.19150 0.96347 0.93798 0.90343 0.94932 1.21562 0.98226 0.93999 1.00475 1.21943 1.00496 0.98475 0.96185 1.22670 0.98458 0.91257 0.92691 1.48383 1.21280 1.10946 1.51582 1.19372 0.81188 0.87695 0.79417 1.90698 1.64852 1.42583 1.44076 1.21066 0.87518 0.90129 1.07187 1.22902 0.97535 1.03955 0.93925 1.22375 0.99252 1.00794 0.95372 0.86619 1.21072 0.97193 0.93863 1.00210 1.22212 0.98412 1.00282 0.98765 1.22226 0.97629 0.91634 0.96384 1.59848 1.12825 1.01137 1.52709 1.22364 0.96360 0.80821 1.01064 0.91612 0.93025 0.93504 0.92510 0.92367 0.84461 0.92988 0.87912 0.87965 0.91435 0.91228 0.91114 0.91667 0.90312 0.89979 0.82699 0.93051 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.00 13.62 55.43 0.76 -27.25 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.07 25.53 29.91 -169.99 -5.08 20.44 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.60 -16.69 8.32 -34.44 -0.29 -16.98 16 8 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.02 0.58 1.96 -91.65 -0.18 0.40 16 10 H 0.03 0.91 6.70 -51.93 -0.35 0.56 16 11 C -0.10 -2.18 5.14 -26.69 -0.14 -2.32 16 12 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 13 C 0.07 1.15 5.63 -3.71 -0.02 1.13 16 14 N -0.59 -11.64 2.97 -172.77 -0.51 -12.15 16 15 C 0.54 10.54 7.17 -10.98 -0.08 10.46 16 16 O -0.54 -12.90 15.52 5.56 0.09 -12.82 16 17 C 0.04 0.52 2.47 -134.04 -0.33 0.19 16 18 C -0.14 -1.92 9.27 -27.93 -0.26 -2.18 16 19 C -0.16 -2.07 5.54 -92.00 -0.51 -2.58 16 20 H 0.12 1.79 7.52 -51.93 -0.39 1.40 16 21 C -0.09 -0.83 5.94 -26.81 -0.16 -0.99 16 22 C -0.16 -1.33 6.07 -26.54 -0.16 -1.49 16 23 C 0.05 0.42 6.36 -3.80 -0.02 0.40 16 24 N -0.64 -7.12 3.47 -102.57 -0.36 -7.47 16 25 C 0.11 2.74 5.68 -3.71 -0.02 2.71 16 26 H 0.27 8.54 6.67 -40.82 -0.27 8.26 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.14 1.91 4.18 -57.18 -0.24 1.67 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.10 1.12 7.17 -51.92 -0.37 0.75 16 35 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.66 6.97 -51.93 -0.36 0.30 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.35 3.89 8.32 -39.29 -0.33 3.57 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 2.21 7.04 -51.93 -0.37 1.84 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -32.12 327.93 -9.55 -41.67 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.95 Total: 5.78 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.43 Total: -13.14 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.11 Total: -46.88 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.12 -9.55 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.428 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds