Wall clock time and date at job start Tue Mar 31 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48502 * 109.46702 * 269.99790 * 3 2 1 5 5 H 1.48496 * 109.47291 * 149.99987 * 3 2 1 6 6 H 1.48494 * 109.47048 * 29.99292 * 3 2 1 7 7 C 1.37878 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00198 * 175.53165 * 7 2 1 9 9 C 1.50706 * 120.00025 * 355.52693 * 7 2 1 10 10 H 1.08996 * 109.49249 * 35.35144 * 9 7 2 11 11 C 1.53041 * 109.49648 * 155.41452 * 9 7 2 12 12 C 1.53043 * 109.53752 * 181.31872 * 11 9 7 13 13 C 1.53192 * 109.31085 * 298.63521 * 12 11 9 14 14 N 1.46926 * 108.77513 * 54.63337 * 13 12 11 15 15 C 1.34780 * 120.62977 * 126.37272 * 14 13 12 16 16 O 1.21276 * 120.00142 * 174.72886 * 15 14 13 17 17 C 1.50709 * 119.99718 * 354.72336 * 15 14 13 18 18 C 1.52350 * 115.88883 * 252.55024 * 17 15 14 19 19 C 1.51277 * 60.17505 * 253.85233 * 18 17 15 20 20 H 1.09002 * 116.45265 * 107.89223 * 19 18 17 21 21 C 1.52777 * 117.55180 * 249.54964 * 19 18 17 22 22 C 1.53070 * 109.83940 * 88.20704 * 21 19 18 23 23 C 1.53309 * 108.35166 * 308.35287 * 22 21 19 24 24 N 1.45860 * 114.62530 * 38.84772 * 17 15 14 25 25 C 1.46923 * 118.74289 * 306.38966 * 14 13 12 26 26 H 0.97004 * 119.99848 * 185.57495 * 1 2 3 27 27 H 1.09004 * 109.45824 * 301.33421 * 11 9 7 28 28 H 1.08993 * 109.46044 * 61.29707 * 11 9 7 29 29 H 1.09005 * 109.49416 * 58.58500 * 12 11 9 30 30 H 1.08991 * 109.49400 * 178.68039 * 12 11 9 31 31 H 1.09001 * 109.58548 * 174.41984 * 13 12 11 32 32 H 1.08999 * 109.58409 * 294.70319 * 13 12 11 33 33 H 1.08996 * 117.54010 * 0.91271 * 18 17 15 34 34 H 1.09010 * 117.52807 * 146.11977 * 18 17 15 35 35 H 1.09001 * 108.43099 * 328.62978 * 21 19 18 36 36 H 1.09004 * 110.17235 * 208.86102 * 21 19 18 37 37 H 1.09001 * 109.68670 * 188.63280 * 22 21 19 38 38 H 1.09002 * 109.69100 * 68.06513 * 22 21 19 39 39 H 1.09006 * 109.57603 * 313.88056 * 23 22 21 40 40 H 1.08999 * 109.57779 * 193.48327 * 23 22 21 41 41 H 1.00906 * 111.00242 * 41.38909 * 24 17 15 42 42 H 1.08999 * 109.58428 * 293.82597 * 25 14 13 43 43 H 1.08996 * 109.59130 * 173.40001 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 3.5466 1.4403 0.7000 6 1 1.4465 2.6527 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0821 -1.1955 -0.0723 9 6 1.2545 -2.4972 0.1029 10 1 0.3087 -2.4155 -0.4326 11 6 2.0942 -3.6194 -0.5116 12 6 1.3196 -4.9373 -0.4378 13 6 1.0487 -5.2842 1.0295 14 7 0.3686 -4.1480 1.6662 15 6 -0.7968 -4.3239 2.3200 16 8 -1.2999 -3.3993 2.9222 17 6 -1.4748 -5.6698 2.3026 18 6 -2.7340 -5.7693 1.4507 19 6 -2.8469 -5.7318 2.9588 20 1 -3.2364 -4.8114 3.3938 21 6 -3.2957 -7.0096 3.6658 22 6 -2.0795 -7.8844 3.9796 23 6 -1.2679 -8.0627 2.6912 24 7 -0.5680 -6.8084 2.3954 25 6 0.9828 -2.8164 1.5764 26 1 -0.4850 -0.8361 0.0816 27 1 2.3097 -3.3828 -1.5536 28 1 3.0295 -3.7166 0.0394 29 1 0.3729 -4.8330 -0.9678 30 1 1.9084 -5.7315 -0.8967 31 1 0.4132 -6.1680 1.0847 32 1 1.9922 -5.4801 1.5389 33 1 -3.0463 -4.8778 0.9070 34 1 -2.9311 -6.7184 0.9520 35 1 -3.9712 -7.5509 3.0034 36 1 -3.8151 -6.7640 4.5922 37 1 -2.4107 -8.8573 4.3427 38 1 -1.4638 -7.3993 4.7371 39 1 -1.9387 -8.3095 1.8682 40 1 -0.5410 -8.8638 2.8254 41 1 0.1629 -6.6347 3.0690 42 1 1.9212 -2.8087 2.1309 43 1 0.3040 -2.0720 1.9924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:23 Heat of formation + Delta-G solvation = -34.056819 kcal Electronic energy + Delta-G solvation = -23066.936608 eV Core-core repulsion = 19918.248636 eV Total energy + Delta-G solvation = -3148.687973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08267 -39.92452 -38.41847 -35.63765 -34.46526 -33.64688 -32.87663 -31.39162 -27.30568 -26.71561 -26.41439 -24.37630 -23.52094 -22.61277 -21.84519 -20.45627 -20.00727 -19.03167 -18.11154 -17.35849 -16.47392 -16.08699 -15.74184 -15.69903 -15.53218 -15.45326 -15.25664 -14.75478 -14.63599 -14.27945 -13.89166 -13.76414 -13.66461 -13.33279 -13.20053 -12.69196 -12.68282 -12.26297 -12.11122 -12.03319 -11.95851 -11.82199 -11.59671 -11.54613 -11.25213 -11.17373 -10.93883 -10.61633 -10.41587 -9.55519 -9.15118 -8.65458 -6.39201 1.39258 1.49027 1.58962 1.75863 1.98319 2.54915 2.56470 3.00902 3.16969 3.35805 3.52898 3.83876 3.98689 4.02145 4.11974 4.17292 4.19539 4.27118 4.45551 4.49984 4.58507 4.63250 4.69301 4.76117 4.80991 4.83456 4.88972 4.94790 5.04728 5.12393 5.14818 5.18310 5.18993 5.25792 5.32729 5.50941 5.55015 5.63884 5.81787 6.06536 6.16674 6.18286 6.52696 6.58175 7.12584 7.44041 8.71258 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.004856 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.948497 B = 5764.393757 C = 6304.999450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.034 4.034 3 Si 1.116 2.884 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.289 1.289 7 C -0.605 4.605 8 H 0.054 0.946 9 C 0.020 3.980 10 H -0.008 1.008 11 C -0.100 4.100 12 C -0.125 4.125 13 C 0.072 3.928 14 N -0.593 5.593 15 C 0.526 3.474 16 O -0.600 6.600 17 C 0.038 3.962 18 C -0.138 4.138 19 C -0.153 4.153 20 H 0.080 0.920 21 C -0.082 4.082 22 C -0.153 4.153 23 C 0.050 3.950 24 N -0.630 5.630 25 C 0.131 3.869 26 H 0.253 0.747 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.355 0.645 42 H 0.053 0.947 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 -22.000 4.795 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.232 4.232 3 Si 0.938 3.062 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.215 1.215 7 C -0.644 4.644 8 H 0.072 0.928 9 C 0.001 3.999 10 H 0.010 0.990 11 C -0.138 4.138 12 C -0.163 4.163 13 C -0.049 4.049 14 N -0.323 5.323 15 C 0.314 3.686 16 O -0.481 6.481 17 C -0.057 4.057 18 C -0.176 4.176 19 C -0.175 4.175 20 H 0.099 0.901 21 C -0.119 4.119 22 C -0.192 4.192 23 C -0.078 4.078 24 N -0.260 5.260 25 C 0.008 3.992 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.183 0.817 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.175 0.825 42 H 0.072 0.928 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.061 -20.026 4.358 20.598 hybrid contribution -0.232 -0.355 0.913 1.007 sum -2.292 -20.382 5.271 21.177 Atomic orbital electron populations 1.70887 1.08160 1.30178 1.48230 1.27387 0.96419 1.06838 0.92553 0.82966 0.74276 0.71125 0.77863 1.19553 1.18995 1.21513 1.22333 0.94834 0.92687 1.54497 0.92762 1.19110 0.94958 0.94913 0.90923 0.98981 1.21464 0.98233 0.94455 0.99600 1.21916 0.99884 0.97401 0.97141 1.23059 0.99704 0.90418 0.91744 1.48418 1.21677 1.10264 1.51894 1.20348 0.80668 0.89449 0.78110 1.90663 1.66057 1.45119 1.46252 1.20735 0.87827 0.88436 1.08733 1.22969 0.96155 1.04447 0.94029 1.22420 0.98024 1.01463 0.95594 0.90150 1.21129 0.98318 0.92193 1.00297 1.22194 0.97399 1.01039 0.98534 1.22416 0.98411 0.90317 0.96611 1.59763 1.12359 1.00836 1.53059 1.21749 0.95314 0.82432 0.99722 0.93696 0.93672 0.92512 0.93845 0.88039 0.81658 0.90942 0.90624 0.84461 0.89368 0.91041 0.88364 0.92858 0.89368 0.87140 0.82459 0.92840 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.27 13.62 21.45 0.29 -60.98 16 2 C -0.03 -2.03 5.46 84.65 0.46 -1.57 16 3 Si 1.12 52.19 29.91 68.60 2.05 54.24 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.61 -34.84 8.32 25.60 0.21 -34.63 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.02 1.07 1.96 -11.46 -0.02 1.05 16 10 H -0.01 -0.48 6.70 -2.39 -0.02 -0.50 16 11 C -0.10 -4.09 5.14 30.62 0.16 -3.93 16 12 C -0.13 -3.98 6.08 30.67 0.19 -3.79 16 13 C 0.07 2.12 5.63 86.36 0.49 2.61 16 14 N -0.59 -23.84 2.97 -818.91 -2.43 -26.28 16 15 C 0.53 21.48 7.17 87.66 0.63 22.11 16 16 O -0.60 -30.74 15.52 -3.02 -0.05 -30.79 16 17 C 0.04 1.06 2.47 2.51 0.01 1.07 16 18 C -0.14 -3.54 9.27 29.82 0.28 -3.26 16 19 C -0.15 -3.99 5.54 -11.69 -0.06 -4.06 16 20 H 0.08 2.67 7.52 -2.39 -0.02 2.65 16 21 C -0.08 -1.37 5.94 30.54 0.18 -1.19 16 22 C -0.15 -1.96 6.07 30.72 0.19 -1.78 16 23 C 0.05 0.60 6.36 86.45 0.55 1.15 16 24 N -0.63 -12.07 3.47 -478.44 -1.66 -13.73 16 25 C 0.13 6.56 5.68 86.36 0.49 7.05 16 26 H 0.25 17.15 6.67 -92.71 -0.62 16.53 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.17 4.02 4.18 -12.75 -0.05 3.96 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.14 2.54 7.17 -2.38 -0.02 2.52 16 35 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 36 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.98 6.97 -2.38 -0.02 0.96 16 40 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.35 6.74 8.32 -89.69 -0.75 5.99 16 42 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.03 1.79 7.04 -2.39 -0.02 1.78 16 Total: -1.00 -77.33 327.93 2.30 -75.03 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.36 Total: 21.69 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 3.74 Total: -19.17 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.80 Total: -100.99 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.05 Total: -30.79 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 2.05 Total: 54.24 kcal Total: -77.33 2.30 -75.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds