Wall clock time and date at job start Tue Mar 31 2020 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47265 * 269.99945 * 3 2 1 5 5 H 1.48500 * 109.46855 * 29.99601 * 3 2 1 6 6 H 1.48499 * 109.47011 * 149.99607 * 3 2 1 7 7 C 1.37870 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00126 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.51960 * 60.08212 * 9 7 2 11 11 C 1.53038 * 109.49621 * 300.00329 * 9 7 2 12 12 C 1.53040 * 109.53432 * 178.68397 * 11 9 7 13 13 C 1.53188 * 109.31603 * 61.36121 * 12 11 9 14 14 N 1.46925 * 108.77775 * 305.36619 * 13 12 11 15 15 C 1.34767 * 120.63049 * 233.58426 * 14 13 12 16 16 O 1.21279 * 120.00251 * 183.76040 * 15 14 13 17 17 C 1.50705 * 120.00160 * 3.75793 * 15 14 13 18 18 C 1.52355 * 115.89422 * 168.36643 * 17 15 14 19 19 C 1.51277 * 60.17553 * 253.85257 * 18 17 15 20 20 H 1.08998 * 117.53671 * 107.41226 * 19 18 17 21 21 C 1.52939 * 115.07737 * 248.62998 * 19 18 17 22 22 C 1.53069 * 109.51674 * 89.31798 * 21 19 18 23 23 C 1.49846 * 109.40931 * 308.32916 * 22 21 19 24 24 N 1.45867 * 114.62314 * 314.66283 * 17 15 14 25 25 C 1.46928 * 118.73731 * 53.86035 * 14 13 12 26 26 H 0.96996 * 120.00148 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46008 * 58.66272 * 11 9 7 28 28 H 1.08999 * 109.45881 * 298.69904 * 11 9 7 29 29 H 1.09004 * 109.49722 * 301.40819 * 12 11 9 30 30 H 1.09006 * 109.52092 * 181.33329 * 12 11 9 31 31 H 1.09004 * 109.58859 * 185.57441 * 13 12 11 32 32 H 1.09002 * 109.58134 * 65.15411 * 13 12 11 33 33 H 1.09007 * 117.53211 * 1.65553 * 18 17 15 34 34 H 1.09000 * 117.52953 * 146.86278 * 18 17 15 35 35 H 1.09001 * 109.46141 * 209.32691 * 21 19 18 36 36 H 1.08995 * 109.46592 * 329.30832 * 21 19 18 37 37 H 1.08999 * 109.69057 * 66.99193 * 22 21 19 38 38 H 1.09003 * 109.68107 * 187.52625 * 22 21 19 39 39 H 1.09004 * 107.09838 * 312.38905 * 23 22 21 40 40 H 1.09006 * 110.21845 * 193.12244 * 23 22 21 41 41 H 1.00892 * 111.00061 * 291.62021 * 24 17 15 42 42 H 1.08998 * 109.58804 * 65.92531 * 25 14 13 43 43 H 1.09000 * 109.58448 * 186.35278 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0011 10 1 3.8755 -0.6813 0.8916 11 6 4.0229 -0.4728 -1.2482 12 6 5.5529 -0.4435 -1.2320 13 6 6.0874 -1.8790 -1.2495 14 7 5.4863 -2.6211 -0.1330 15 6 6.2625 -3.2743 0.7542 16 8 5.7532 -3.9393 1.6313 17 6 7.7633 -3.1786 0.6565 18 6 8.5434 -3.7158 1.8498 19 6 8.4338 -2.2226 1.6330 20 1 7.7879 -1.6615 2.3083 21 6 9.7382 -1.5271 1.2409 22 6 9.8833 -1.5338 -0.2829 23 6 9.7007 -2.9304 -0.7943 24 7 8.2959 -3.3388 -0.6920 25 6 4.0227 -2.6427 -0.0057 26 1 -0.4850 0.8400 -0.0004 27 1 3.6402 0.5477 -1.2605 28 1 3.6792 -1.0001 -2.1380 29 1 5.8976 0.0621 -0.3299 30 1 5.9163 0.0909 -2.1099 31 1 7.1717 -1.8666 -1.1384 32 1 5.8201 -2.3569 -2.1920 33 1 7.9728 -4.1523 2.6696 34 1 9.5120 -4.1753 1.6530 35 1 9.7231 -0.4979 1.5997 36 1 10.5802 -2.0553 1.6882 37 1 9.1137 -0.9031 -0.7279 38 1 10.8694 -1.1605 -0.5594 39 1 10.3166 -3.5818 -0.1743 40 1 10.0258 -2.9969 -1.8326 41 1 8.1693 -4.2841 -1.0208 42 1 3.5905 -3.1816 -0.8487 43 1 3.7443 -3.1343 0.9265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:31 Heat of formation + Delta-G solvation = -2.683885 kcal Electronic energy + Delta-G solvation = -23219.903694 eV Core-core repulsion = 20072.576154 eV Total energy + Delta-G solvation = -3147.327540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95010 -38.66017 -36.90498 -33.69860 -33.40216 -32.38805 -31.59911 -30.41475 -26.12160 -25.71301 -24.84610 -23.34745 -21.86368 -21.52448 -20.22131 -19.08168 -18.46022 -17.47628 -16.65603 -15.89457 -15.71190 -15.06646 -14.82504 -14.32154 -14.11519 -13.98322 -13.78650 -13.55402 -13.42239 -12.98467 -12.61661 -12.41222 -12.22919 -12.17402 -11.86408 -11.37510 -11.30372 -11.08323 -10.96686 -10.79462 -10.43719 -10.23394 -10.20193 -10.10478 -9.76349 -9.52075 -9.30823 -8.99895 -8.53377 -8.34845 -7.96113 -6.06947 -4.06573 2.74826 3.26595 3.38012 3.39385 3.40800 3.50338 4.01293 4.41339 4.44746 4.52042 4.62038 4.76882 4.82103 4.93374 5.23303 5.28996 5.33735 5.45714 5.54351 5.57326 5.60784 5.68284 5.78297 5.81142 5.88035 5.97588 6.06310 6.07626 6.16323 6.28189 6.35408 6.51826 6.61617 6.67823 6.78495 6.82080 6.98773 7.01534 7.19883 7.51559 7.76442 7.97336 8.49863 8.60178 8.96525 9.55028 11.06141 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.005412 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.203648 B = 5172.504199 C = 5534.647628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.007 3.993 10 H 0.028 0.972 11 C -0.122 4.122 12 C -0.140 4.140 13 C 0.098 3.902 14 N -0.588 5.588 15 C 0.549 3.451 16 O -0.550 6.550 17 C 0.037 3.963 18 C -0.186 4.186 19 C -0.123 4.123 20 H 0.112 0.888 21 C -0.091 4.091 22 C -0.127 4.127 23 C 0.057 3.943 24 N -0.640 5.640 25 C 0.125 3.875 26 H 0.264 0.736 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.085 0.915 41 H 0.353 0.647 42 H 0.062 0.938 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.654 -3.365 -2.576 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.013 4.013 10 H 0.047 0.953 11 C -0.160 4.160 12 C -0.178 4.178 13 C -0.025 4.025 14 N -0.318 5.318 15 C 0.334 3.666 16 O -0.428 6.428 17 C -0.059 4.059 18 C -0.226 4.226 19 C -0.142 4.142 20 H 0.130 0.870 21 C -0.129 4.129 22 C -0.164 4.164 23 C -0.072 4.072 24 N -0.273 5.273 25 C 0.004 3.996 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.103 0.897 41 H 0.174 0.826 42 H 0.080 0.920 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.966 -3.020 -2.347 22.296 hybrid contribution 0.648 0.360 0.278 0.792 sum 22.614 -2.659 -2.069 22.864 Atomic orbital electron populations 1.69897 1.06256 1.26940 1.50709 1.24974 0.94668 0.98980 0.94394 0.86820 0.79901 0.83563 0.77774 1.20610 1.22595 1.19143 1.20930 0.88405 0.94694 1.51121 0.90637 1.19526 0.96707 0.91359 0.93672 0.95344 1.21979 0.92543 1.00375 1.01065 1.22034 0.98179 0.96590 1.01020 1.22243 1.01001 0.90814 0.88444 1.48171 1.07736 1.49074 1.26818 1.19193 0.86322 0.79480 0.81558 1.90680 1.74389 1.41785 1.35933 1.21080 0.91742 1.06767 0.86266 1.23312 1.01667 0.96556 1.01092 1.22157 0.98778 0.93097 1.00217 0.86957 1.21216 0.94788 1.00856 0.96046 1.21104 1.02555 0.97273 0.95485 1.21336 0.87766 0.96834 1.01226 1.59616 1.18640 1.30025 1.18975 1.21890 0.76111 0.99361 1.02232 0.92645 0.93522 0.92085 0.92606 0.92143 0.86027 0.92354 0.87239 0.88488 0.90885 0.91396 0.90441 0.90818 0.95106 0.89684 0.82646 0.91952 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 3 Si 0.89 22.20 24.39 -169.99 -4.15 18.05 16 4 H -0.28 -6.72 6.86 56.52 0.39 -6.34 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 7 C -0.51 -14.48 9.15 -34.44 -0.31 -14.80 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C 0.01 0.16 1.85 -91.42 -0.17 -0.01 16 10 H 0.03 0.72 7.21 -51.93 -0.37 0.35 16 11 C -0.12 -2.59 4.65 -26.69 -0.12 -2.71 16 12 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 13 C 0.10 1.50 5.88 -3.71 -0.02 1.48 16 14 N -0.59 -10.67 2.97 -172.50 -0.51 -11.18 16 15 C 0.55 9.75 7.24 -10.99 -0.08 9.67 16 16 O -0.55 -11.67 15.57 5.56 0.09 -11.58 16 17 C 0.04 0.48 2.18 -134.04 -0.29 0.19 16 18 C -0.19 -2.19 9.00 -27.93 -0.25 -2.44 16 19 C -0.12 -1.45 5.82 -91.92 -0.54 -1.99 16 20 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 21 C -0.09 -0.80 5.86 -26.73 -0.16 -0.96 16 22 C -0.13 -1.00 5.89 -28.26 -0.17 -1.17 16 23 C 0.06 0.44 6.24 -5.53 -0.03 0.41 16 24 N -0.64 -6.53 3.80 -104.46 -0.40 -6.93 16 25 C 0.13 2.68 5.68 -3.48 -0.02 2.66 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.05 1.06 3.25 -51.93 -0.17 0.89 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.12 1.61 3.89 -51.93 -0.20 1.41 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.11 1.48 7.57 -51.93 -0.39 1.09 16 34 H 0.10 0.94 7.12 -51.93 -0.37 0.57 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.52 8.02 -51.93 -0.42 0.10 16 37 H 0.08 0.72 7.43 -51.93 -0.39 0.33 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.03 0.23 6.88 -51.93 -0.36 -0.13 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.35 3.32 8.89 -39.30 -0.35 2.97 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.92 7.02 -51.93 -0.36 1.56 16 LS Contribution 318.99 15.07 4.81 4.81 Total: -1.00 -32.01 318.99 -8.60 -40.60 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.79 Total: 3.38 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.42 Total: -10.22 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.13 Total: -45.03 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.15 Total: 18.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.01 -8.60 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.920 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds