Wall clock time and date at job start Tue Mar 31 2020 00:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47265 * 269.99945 * 3 2 1 5 5 H 1.48500 * 109.46855 * 29.99601 * 3 2 1 6 6 H 1.48499 * 109.47011 * 149.99607 * 3 2 1 7 7 C 1.37870 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00126 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.51960 * 60.08212 * 9 7 2 11 11 C 1.53038 * 109.49621 * 300.00329 * 9 7 2 12 12 C 1.53040 * 109.53432 * 178.68397 * 11 9 7 13 13 C 1.53188 * 109.31603 * 61.36121 * 12 11 9 14 14 N 1.46925 * 108.77775 * 305.36619 * 13 12 11 15 15 C 1.34767 * 120.63049 * 233.58426 * 14 13 12 16 16 O 1.21279 * 120.00251 * 183.76040 * 15 14 13 17 17 C 1.50705 * 120.00160 * 3.75793 * 15 14 13 18 18 C 1.52355 * 115.89422 * 168.36643 * 17 15 14 19 19 C 1.51277 * 60.17553 * 253.85257 * 18 17 15 20 20 H 1.08998 * 117.53671 * 107.41226 * 19 18 17 21 21 C 1.52939 * 115.07737 * 248.62998 * 19 18 17 22 22 C 1.53069 * 109.51674 * 89.31798 * 21 19 18 23 23 C 1.49846 * 109.40931 * 308.32916 * 22 21 19 24 24 N 1.45867 * 114.62314 * 314.66283 * 17 15 14 25 25 C 1.46928 * 118.73731 * 53.86035 * 14 13 12 26 26 H 0.96996 * 120.00148 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46008 * 58.66272 * 11 9 7 28 28 H 1.08999 * 109.45881 * 298.69904 * 11 9 7 29 29 H 1.09004 * 109.49722 * 301.40819 * 12 11 9 30 30 H 1.09006 * 109.52092 * 181.33329 * 12 11 9 31 31 H 1.09004 * 109.58859 * 185.57441 * 13 12 11 32 32 H 1.09002 * 109.58134 * 65.15411 * 13 12 11 33 33 H 1.09007 * 117.53211 * 1.65553 * 18 17 15 34 34 H 1.09000 * 117.52953 * 146.86278 * 18 17 15 35 35 H 1.09001 * 109.46141 * 209.32691 * 21 19 18 36 36 H 1.08995 * 109.46592 * 329.30832 * 21 19 18 37 37 H 1.08999 * 109.69057 * 66.99193 * 22 21 19 38 38 H 1.09003 * 109.68107 * 187.52625 * 22 21 19 39 39 H 1.09004 * 107.09838 * 312.38905 * 23 22 21 40 40 H 1.09006 * 110.21845 * 193.12244 * 23 22 21 41 41 H 1.00892 * 111.00061 * 291.62021 * 24 17 15 42 42 H 1.08998 * 109.58804 * 65.92531 * 25 14 13 43 43 H 1.09000 * 109.58448 * 186.35278 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0011 10 1 3.8755 -0.6813 0.8916 11 6 4.0229 -0.4728 -1.2482 12 6 5.5529 -0.4435 -1.2320 13 6 6.0874 -1.8790 -1.2495 14 7 5.4863 -2.6211 -0.1330 15 6 6.2625 -3.2743 0.7542 16 8 5.7532 -3.9393 1.6313 17 6 7.7633 -3.1786 0.6565 18 6 8.5434 -3.7158 1.8498 19 6 8.4338 -2.2226 1.6330 20 1 7.7879 -1.6615 2.3083 21 6 9.7382 -1.5271 1.2409 22 6 9.8833 -1.5338 -0.2829 23 6 9.7007 -2.9304 -0.7943 24 7 8.2959 -3.3388 -0.6920 25 6 4.0227 -2.6427 -0.0057 26 1 -0.4850 0.8400 -0.0004 27 1 3.6402 0.5477 -1.2605 28 1 3.6792 -1.0001 -2.1380 29 1 5.8976 0.0621 -0.3299 30 1 5.9163 0.0909 -2.1099 31 1 7.1717 -1.8666 -1.1384 32 1 5.8201 -2.3569 -2.1920 33 1 7.9728 -4.1523 2.6696 34 1 9.5120 -4.1753 1.6530 35 1 9.7231 -0.4979 1.5997 36 1 10.5802 -2.0553 1.6882 37 1 9.1137 -0.9031 -0.7279 38 1 10.8694 -1.1605 -0.5594 39 1 10.3166 -3.5818 -0.1743 40 1 10.0258 -2.9969 -1.8326 41 1 8.1693 -4.2841 -1.0208 42 1 3.5905 -3.1816 -0.8487 43 1 3.7443 -3.1343 0.9265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:30 Heat of formation + Delta-G solvation = -24.629728 kcal Electronic energy + Delta-G solvation = -23220.855337 eV Core-core repulsion = 20072.576154 eV Total energy + Delta-G solvation = -3148.279183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.04247 -39.94302 -38.44132 -35.35853 -34.40884 -33.64328 -32.98799 -32.11006 -27.63431 -26.59347 -26.53273 -24.52914 -23.15547 -22.76074 -21.57461 -20.38034 -19.48647 -19.00423 -18.46265 -17.25861 -16.78591 -16.52728 -16.19271 -15.55765 -15.41409 -15.35559 -14.88852 -14.68926 -14.58257 -14.48019 -14.15767 -13.94054 -13.80298 -13.21246 -13.00204 -12.90189 -12.57871 -12.35455 -12.14457 -12.09293 -11.88786 -11.71054 -11.51697 -11.50350 -11.24025 -11.11364 -11.02887 -10.70197 -10.63163 -9.51568 -9.21921 -8.33546 -6.38655 1.26370 1.33552 1.43512 1.44512 2.02824 2.29448 2.58965 3.01176 3.06995 3.45059 3.56914 3.78153 4.04947 4.09172 4.10915 4.15162 4.21184 4.27548 4.34950 4.51540 4.56434 4.68624 4.71614 4.79484 4.81146 4.90696 4.96102 4.97876 5.10412 5.11706 5.14290 5.16515 5.21857 5.30525 5.38349 5.43183 5.49823 5.63753 5.76829 5.90987 6.23989 6.26996 6.57124 6.67175 7.16924 7.27100 8.83249 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.005412 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.203648 B = 5172.504199 C = 5534.647628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.257 1.257 5 H -0.299 1.299 6 H -0.255 1.255 7 C -0.523 4.523 8 H 0.033 0.967 9 C 0.011 3.989 10 H 0.011 0.989 11 C -0.121 4.121 12 C -0.133 4.133 13 C 0.100 3.900 14 N -0.590 5.590 15 C 0.540 3.460 16 O -0.596 6.596 17 C 0.036 3.964 18 C -0.179 4.179 19 C -0.119 4.119 20 H 0.088 0.912 21 C -0.087 4.087 22 C -0.125 4.125 23 C 0.056 3.944 24 N -0.640 5.640 25 C 0.135 3.865 26 H 0.267 0.733 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.108 0.892 41 H 0.358 0.642 42 H 0.061 0.939 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.176 -2.062 -4.308 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.227 1.227 6 H -0.179 1.179 7 C -0.562 4.562 8 H 0.051 0.949 9 C -0.008 4.008 10 H 0.029 0.971 11 C -0.158 4.158 12 C -0.171 4.171 13 C -0.022 4.022 14 N -0.320 5.320 15 C 0.328 3.672 16 O -0.477 6.477 17 C -0.060 4.060 18 C -0.219 4.219 19 C -0.138 4.138 20 H 0.107 0.893 21 C -0.125 4.125 22 C -0.163 4.163 23 C -0.071 4.071 24 N -0.273 5.273 25 C 0.012 3.988 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.168 0.832 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.059 0.941 40 H 0.126 0.874 41 H 0.180 0.820 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 26.531 -1.722 -4.110 26.902 hybrid contribution -0.842 -0.166 0.873 1.224 sum 25.689 -1.888 -3.237 25.961 Atomic orbital electron populations 1.70046 1.08195 1.28158 1.52371 1.25856 0.95446 1.03025 0.93932 0.85757 0.78715 0.78404 0.79007 1.18234 1.22708 1.17887 1.21221 0.91036 0.93227 1.50667 0.94883 1.19393 0.93724 0.93068 0.94650 0.97050 1.21868 0.96013 0.98956 0.98993 1.22021 0.94459 0.97983 1.02657 1.22526 1.02318 0.89566 0.87741 1.48231 1.06069 1.49664 1.28001 1.20102 0.88588 0.78202 0.80329 1.90651 1.75868 1.43557 1.37615 1.20737 0.88377 1.08463 0.88390 1.23329 1.02223 0.96841 0.99531 1.22251 0.99665 0.93082 0.98845 0.89348 1.21270 0.93114 1.00884 0.97215 1.21143 1.03665 0.97162 0.94281 1.21499 0.85921 0.96837 1.02889 1.59534 1.20622 1.30601 1.16589 1.21448 0.79025 0.97614 1.00681 0.92404 0.94573 0.91970 0.92998 0.88302 0.83242 0.91075 0.89825 0.85562 0.90443 0.89634 0.91580 0.88220 0.94061 0.87379 0.82038 0.92078 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 2 C 0.01 0.88 5.45 84.65 0.46 1.34 16 3 Si 0.95 45.99 24.39 68.60 1.67 47.67 16 4 H -0.26 -11.42 6.86 99.48 0.68 -10.74 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.25 -11.66 6.53 99.48 0.65 -11.02 16 7 C -0.52 -30.96 9.15 25.60 0.23 -30.73 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C 0.01 0.55 1.85 -11.31 -0.02 0.53 16 10 H 0.01 0.59 7.21 -2.39 -0.02 0.57 16 11 C -0.12 -4.94 4.65 30.62 0.14 -4.80 16 12 C -0.13 -4.05 6.08 30.67 0.19 -3.87 16 13 C 0.10 2.77 5.88 86.36 0.51 3.28 16 14 N -0.59 -21.26 2.97 -818.06 -2.43 -23.68 16 15 C 0.54 19.26 7.24 87.66 0.63 19.90 16 16 O -0.60 -26.46 15.57 -3.03 -0.05 -26.51 16 17 C 0.04 0.86 2.18 2.51 0.01 0.87 16 18 C -0.18 -3.92 9.00 29.82 0.27 -3.65 16 19 C -0.12 -2.57 5.82 -11.63 -0.07 -2.63 16 20 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 21 C -0.09 -1.18 5.86 30.60 0.18 -1.00 16 22 C -0.12 -1.34 5.89 29.60 0.17 -1.17 16 23 C 0.06 0.58 6.24 85.34 0.53 1.12 16 24 N -0.64 -10.76 3.80 -484.39 -1.84 -12.60 16 25 C 0.14 6.03 5.68 86.51 0.49 6.52 16 26 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.04 1.55 3.25 -2.39 -0.01 1.55 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.15 3.37 3.89 -2.38 -0.01 3.36 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.29 7.57 -2.38 -0.02 2.27 16 34 H 0.13 1.99 7.12 -2.39 -0.02 1.98 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 0.90 8.02 -2.39 -0.02 0.88 16 37 H 0.07 0.90 7.43 -2.39 -0.02 0.88 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.04 0.38 6.88 -2.39 -0.02 0.37 16 40 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.36 5.54 8.89 -89.70 -0.80 4.74 16 42 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.05 2.64 7.02 -2.39 -0.02 2.62 16 Total: -1.00 -74.56 318.99 1.52 -73.04 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.13 Total: 16.58 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.73 Total: -14.30 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -3.97 Total: -96.47 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.67 Total: 47.67 kcal Total: -74.56 1.52 -73.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.409 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds