Wall clock time and date at job start Tue Mar 31 2020 00:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99596 * 2 1 4 4 H 1.48501 * 109.46880 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47062 * 119.99579 * 3 2 1 6 6 H 1.48503 * 109.46567 * 239.99817 * 3 2 1 7 7 C 1.37869 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00369 * 337.20366 * 7 2 1 9 9 C 1.50710 * 120.00048 * 157.20200 * 7 2 1 10 10 C 1.53044 * 109.45727 * 294.70724 * 9 7 2 11 11 C 1.53194 * 109.30990 * 178.60052 * 10 9 7 12 12 N 1.46923 * 108.76714 * 54.65580 * 11 10 9 13 13 C 1.34768 * 120.63123 * 126.35993 * 12 11 10 14 14 O 1.21279 * 120.00461 * 354.15197 * 13 12 11 15 15 C 1.50702 * 119.99941 * 174.15004 * 13 12 11 16 16 C 1.52358 * 115.89603 * 177.98669 * 15 13 12 17 17 C 1.52222 * 115.91142 * 109.79339 * 15 13 12 18 18 H 1.09003 * 117.36766 * 359.73796 * 17 15 13 19 19 C 1.52938 * 119.79284 * 211.04886 * 17 15 13 20 20 C 1.53063 * 109.52094 * 20.60501 * 19 17 15 21 21 C 1.53311 * 108.34996 * 307.28203 * 20 19 17 22 22 N 1.45868 * 114.63019 * 323.12144 * 15 13 12 23 23 C 1.46931 * 118.73588 * 306.38452 * 12 11 10 24 24 C 1.53040 * 109.46170 * 174.65099 * 9 7 2 25 25 H 0.96999 * 119.99452 * 170.71925 * 1 2 3 26 26 H 1.08995 * 109.45595 * 54.67637 * 9 7 2 27 27 H 1.09000 * 109.49524 * 298.56521 * 10 9 7 28 28 H 1.09003 * 109.50016 * 58.66128 * 10 9 7 29 29 H 1.09002 * 109.59466 * 294.86460 * 11 10 9 30 30 H 1.08999 * 109.69568 * 174.50570 * 11 10 9 31 31 H 1.08999 * 117.53033 * 0.90951 * 16 15 13 32 32 H 1.08997 * 117.53075 * 146.12076 * 16 15 13 33 33 H 1.08998 * 109.46148 * 140.61808 * 19 17 15 34 34 H 1.09001 * 109.46315 * 260.59687 * 19 17 15 35 35 H 1.09002 * 109.68901 * 66.99107 * 20 19 17 36 36 H 1.09000 * 109.69226 * 187.51962 * 20 19 17 37 37 H 1.09004 * 109.57832 * 193.48443 * 21 20 19 38 38 H 1.09002 * 109.57518 * 313.87211 * 21 20 19 39 39 H 1.00898 * 110.99454 * 291.61571 * 22 15 13 40 40 H 1.09003 * 109.58206 * 293.81675 * 23 12 11 41 41 H 1.08994 * 109.70208 * 173.46887 * 23 12 11 42 42 H 1.08999 * 109.49447 * 301.33891 * 24 9 7 43 43 H 1.09004 * 109.49655 * 61.43233 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1939 0.0005 8 1 1.5280 -2.0926 0.3633 9 6 3.4234 -1.2451 -0.5052 10 6 3.4430 -0.9256 -2.0018 11 6 4.8898 -0.9442 -2.5048 12 7 5.4950 -2.2367 -2.1560 13 6 6.0796 -2.9987 -3.1015 14 8 6.0175 -2.6718 -4.2678 15 6 6.8107 -4.2569 -2.7096 16 6 7.3952 -5.0716 -3.8567 17 6 6.1457 -5.5655 -3.1126 18 1 5.1971 -5.5021 -3.6458 19 6 6.3299 -6.8106 -2.2438 20 6 6.7526 -6.3922 -0.8334 21 6 7.9717 -5.4698 -0.9486 22 7 7.5446 -4.1669 -1.4522 23 6 5.4502 -2.6831 -0.7569 24 6 3.9972 -2.6448 -0.2733 25 1 -0.4849 -0.8291 -0.1355 26 1 4.0264 -0.5120 0.0305 27 1 2.8605 -1.6727 -2.5409 28 1 3.0126 0.0618 -2.1687 29 1 5.4515 -0.1383 -2.0323 30 1 4.9042 -0.8140 -3.5869 31 1 7.2605 -4.6870 -4.8676 32 1 8.3315 -5.5989 -3.6742 33 1 5.3901 -7.3604 -2.1931 34 1 7.0999 -7.4470 -2.6798 35 1 5.9345 -5.8604 -0.3474 36 1 7.0134 -7.2757 -0.2508 37 1 8.4344 -5.3518 0.0313 38 1 8.6913 -5.9008 -1.6448 39 1 8.3302 -3.5393 -1.5362 40 1 6.0577 -2.0190 -0.1419 41 1 5.8330 -3.7009 -0.6835 42 1 3.9612 -2.8810 0.7902 43 1 3.4094 -3.3755 -0.8289 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580048209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:21 Heat of formation + Delta-G solvation = -10.451336 kcal Electronic energy + Delta-G solvation = -23105.591904 eV Core-core repulsion = 19957.927542 eV Total energy + Delta-G solvation = -3147.664362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.87979 -38.62054 -36.89960 -33.67230 -33.28487 -32.41715 -31.27592 -30.34780 -26.44951 -25.77489 -24.21023 -22.61972 -22.26159 -21.60612 -20.07375 -19.08073 -18.41624 -17.49927 -17.32044 -15.98007 -15.65980 -14.96151 -14.53340 -14.33635 -13.99750 -13.86754 -13.76370 -13.43896 -13.32222 -13.01879 -12.71110 -12.31804 -12.30594 -11.94618 -11.78540 -11.42412 -11.33445 -11.01398 -10.71065 -10.66850 -10.49256 -10.23576 -10.20449 -9.91928 -9.69249 -9.58440 -9.36315 -8.83180 -8.34507 -8.23105 -8.03443 -6.37842 -4.01163 2.64882 3.31236 3.42292 3.46906 3.50977 3.64899 3.96650 4.45472 4.49257 4.55410 4.59279 4.76696 4.84192 4.94669 5.22498 5.23332 5.34330 5.46127 5.56057 5.68654 5.71491 5.76390 5.80967 5.87124 5.92943 5.99350 5.99949 6.07322 6.13266 6.24837 6.45452 6.55199 6.69003 6.75900 6.81606 6.96532 7.00522 7.07909 7.37749 7.57582 7.88730 8.21805 8.42785 8.49002 8.94212 9.63917 10.94979 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.005089 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.805123 B = 5500.985331 C = 5852.090081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 1.033 2.967 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.601 4.601 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.129 4.129 11 C 0.104 3.896 12 N -0.583 5.583 13 C 0.550 3.450 14 O -0.556 6.556 15 C 0.041 3.959 16 C -0.189 4.189 17 C -0.120 4.120 18 H 0.112 0.888 19 C -0.092 4.092 20 C -0.124 4.124 21 C 0.058 3.942 22 N -0.644 5.644 23 C 0.098 3.902 24 C -0.116 4.116 25 H 0.269 0.731 26 H 0.020 0.980 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.032 0.968 39 H 0.351 0.649 40 H 0.056 0.944 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.428 -11.877 -2.591 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.168 4.168 3 Si 0.862 3.138 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.638 4.638 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.167 4.167 11 C -0.018 4.018 12 N -0.313 5.313 13 C 0.336 3.664 14 O -0.435 6.435 15 C -0.054 4.054 16 C -0.229 4.229 17 C -0.140 4.140 18 H 0.130 0.870 19 C -0.129 4.129 20 C -0.162 4.162 21 C -0.071 4.071 22 N -0.276 5.276 23 C -0.024 4.024 24 C -0.154 4.154 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.172 0.828 40 H 0.074 0.926 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.615 -10.034 -2.671 19.592 hybrid contribution 0.791 -1.750 -0.639 2.024 sum 17.405 -11.783 -3.310 21.278 Atomic orbital electron populations 1.70803 1.07462 1.30815 1.44611 1.25698 0.95891 1.02261 0.92984 0.84214 0.75692 0.76685 0.77238 1.21326 1.21068 1.20275 1.21969 0.97531 0.97343 1.46930 0.92716 1.18943 0.97161 0.92435 0.91164 1.22357 0.92532 1.01921 0.99936 1.21840 0.95620 0.83492 1.00861 1.48004 1.54336 1.19779 1.09182 1.19259 0.78934 0.83196 0.85021 1.90657 1.62479 1.71927 1.18425 1.21060 1.01690 0.92170 0.90481 1.23677 0.97174 1.03524 0.98516 1.22502 0.98059 0.92342 1.01055 0.86968 1.21197 1.02083 0.94993 0.94675 1.21720 0.98557 0.99137 0.96742 1.21919 0.96498 0.88840 0.99863 1.59392 1.29784 1.12731 1.25718 1.22355 0.97771 1.02539 0.79762 1.21877 0.93739 0.99801 1.00000 0.92165 0.96246 0.92700 0.91484 0.92244 0.90342 0.87265 0.88421 0.90840 0.91415 0.90107 0.90955 0.89777 0.94936 0.82822 0.92574 0.86705 0.91989 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.69 55.43 0.76 -26.97 16 2 C 0.04 1.06 5.25 -17.82 -0.09 0.97 16 3 Si 1.03 25.01 26.48 -169.99 -4.50 20.51 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.18 5.96 56.52 0.34 -5.85 16 7 C -0.60 -16.70 8.78 -34.44 -0.30 -17.01 16 8 H 0.05 1.64 7.99 -52.49 -0.42 1.23 16 9 C 0.02 0.51 1.66 -91.72 -0.15 0.36 16 10 C -0.13 -2.86 5.08 -26.61 -0.14 -3.00 16 11 C 0.10 1.99 6.44 -3.71 -0.02 1.97 16 12 N -0.58 -10.29 2.97 -172.77 -0.51 -10.80 16 13 C 0.55 9.42 7.27 -10.99 -0.08 9.34 16 14 O -0.56 -11.16 15.50 5.56 0.09 -11.07 16 15 C 0.04 0.53 2.13 -134.04 -0.29 0.25 16 16 C -0.19 -2.17 9.17 -26.75 -0.25 -2.41 16 17 C -0.12 -1.42 5.86 -90.74 -0.53 -1.95 16 18 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 19 C -0.09 -0.83 5.91 -26.73 -0.16 -0.99 16 20 C -0.12 -1.06 6.03 -26.54 -0.16 -1.22 16 21 C 0.06 0.47 6.33 -4.11 -0.03 0.44 16 22 N -0.64 -6.74 3.61 -102.99 -0.37 -7.11 16 23 C 0.10 1.60 5.61 -3.71 -0.02 1.58 16 24 C -0.12 -2.29 5.30 -26.61 -0.14 -2.43 16 25 H 0.27 8.22 8.74 -40.82 -0.36 7.86 16 26 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 27 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.55 5.32 -51.93 -0.28 1.28 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.52 7.00 -51.93 -0.36 1.16 16 31 H 0.11 1.42 7.52 -51.93 -0.39 1.03 16 32 H 0.10 0.93 7.15 -51.93 -0.37 0.55 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 35 H 0.08 0.83 7.37 -51.93 -0.38 0.45 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.25 6.96 -51.93 -0.36 -0.11 16 39 H 0.35 3.36 8.88 -39.29 -0.35 3.01 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.12 1.66 4.08 -51.93 -0.21 1.45 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -31.42 322.35 -8.96 -40.37 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.92 Total: 4.30 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.36 Total: -14.09 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.13 Total: -44.89 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.50 Total: 20.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.42 -8.96 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.922 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds