Wall clock time and date at job start Tue Mar 31 2020 00:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99596 * 2 1 4 4 H 1.48501 * 109.46880 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47062 * 119.99579 * 3 2 1 6 6 H 1.48503 * 109.46567 * 239.99817 * 3 2 1 7 7 C 1.37869 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00369 * 337.20366 * 7 2 1 9 9 C 1.50710 * 120.00048 * 157.20200 * 7 2 1 10 10 C 1.53044 * 109.45727 * 294.70724 * 9 7 2 11 11 C 1.53194 * 109.30990 * 178.60052 * 10 9 7 12 12 N 1.46923 * 108.76714 * 54.65580 * 11 10 9 13 13 C 1.34768 * 120.63123 * 126.35993 * 12 11 10 14 14 O 1.21279 * 120.00461 * 354.15197 * 13 12 11 15 15 C 1.50702 * 119.99941 * 174.15004 * 13 12 11 16 16 C 1.52358 * 115.89603 * 177.98669 * 15 13 12 17 17 C 1.52222 * 115.91142 * 109.79339 * 15 13 12 18 18 H 1.09003 * 117.36766 * 359.73796 * 17 15 13 19 19 C 1.52938 * 119.79284 * 211.04886 * 17 15 13 20 20 C 1.53063 * 109.52094 * 20.60501 * 19 17 15 21 21 C 1.53311 * 108.34996 * 307.28203 * 20 19 17 22 22 N 1.45868 * 114.63019 * 323.12144 * 15 13 12 23 23 C 1.46931 * 118.73588 * 306.38452 * 12 11 10 24 24 C 1.53040 * 109.46170 * 174.65099 * 9 7 2 25 25 H 0.96999 * 119.99452 * 170.71925 * 1 2 3 26 26 H 1.08995 * 109.45595 * 54.67637 * 9 7 2 27 27 H 1.09000 * 109.49524 * 298.56521 * 10 9 7 28 28 H 1.09003 * 109.50016 * 58.66128 * 10 9 7 29 29 H 1.09002 * 109.59466 * 294.86460 * 11 10 9 30 30 H 1.08999 * 109.69568 * 174.50570 * 11 10 9 31 31 H 1.08999 * 117.53033 * 0.90951 * 16 15 13 32 32 H 1.08997 * 117.53075 * 146.12076 * 16 15 13 33 33 H 1.08998 * 109.46148 * 140.61808 * 19 17 15 34 34 H 1.09001 * 109.46315 * 260.59687 * 19 17 15 35 35 H 1.09002 * 109.68901 * 66.99107 * 20 19 17 36 36 H 1.09000 * 109.69226 * 187.51962 * 20 19 17 37 37 H 1.09004 * 109.57832 * 193.48443 * 21 20 19 38 38 H 1.09002 * 109.57518 * 313.87211 * 21 20 19 39 39 H 1.00898 * 110.99454 * 291.61571 * 22 15 13 40 40 H 1.09003 * 109.58206 * 293.81675 * 23 12 11 41 41 H 1.08994 * 109.70208 * 173.46887 * 23 12 11 42 42 H 1.08999 * 109.49447 * 301.33891 * 24 9 7 43 43 H 1.09004 * 109.49655 * 61.43233 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1939 0.0005 8 1 1.5280 -2.0926 0.3633 9 6 3.4234 -1.2451 -0.5052 10 6 3.4430 -0.9256 -2.0018 11 6 4.8898 -0.9442 -2.5048 12 7 5.4950 -2.2367 -2.1560 13 6 6.0796 -2.9987 -3.1015 14 8 6.0175 -2.6718 -4.2678 15 6 6.8107 -4.2569 -2.7096 16 6 7.3952 -5.0716 -3.8567 17 6 6.1457 -5.5655 -3.1126 18 1 5.1971 -5.5021 -3.6458 19 6 6.3299 -6.8106 -2.2438 20 6 6.7526 -6.3922 -0.8334 21 6 7.9717 -5.4698 -0.9486 22 7 7.5446 -4.1669 -1.4522 23 6 5.4502 -2.6831 -0.7569 24 6 3.9972 -2.6448 -0.2733 25 1 -0.4849 -0.8291 -0.1355 26 1 4.0264 -0.5120 0.0305 27 1 2.8605 -1.6727 -2.5409 28 1 3.0126 0.0618 -2.1687 29 1 5.4515 -0.1383 -2.0323 30 1 4.9042 -0.8140 -3.5869 31 1 7.2605 -4.6870 -4.8676 32 1 8.3315 -5.5989 -3.6742 33 1 5.3901 -7.3604 -2.1931 34 1 7.0999 -7.4470 -2.6798 35 1 5.9345 -5.8604 -0.3474 36 1 7.0134 -7.2757 -0.2508 37 1 8.4344 -5.3518 0.0313 38 1 8.6913 -5.9008 -1.6448 39 1 8.3302 -3.5393 -1.5362 40 1 6.0577 -2.0190 -0.1419 41 1 5.8330 -3.7009 -0.6835 42 1 3.9612 -2.8810 0.7902 43 1 3.4094 -3.3755 -0.8289 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580048209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:20 Heat of formation + Delta-G solvation = -30.917791 kcal Electronic energy + Delta-G solvation = -23106.479396 eV Core-core repulsion = 19957.927542 eV Total energy + Delta-G solvation = -3148.551854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97853 -39.85831 -38.42692 -35.44434 -34.20272 -33.55214 -32.91705 -31.88567 -28.17609 -26.54029 -25.53463 -24.25270 -23.51562 -22.73494 -21.46088 -20.38670 -19.65339 -19.43932 -18.60644 -17.27017 -16.58353 -16.14042 -15.91067 -15.59622 -15.47665 -15.28475 -14.85443 -14.69365 -14.50176 -14.38278 -14.29330 -13.99864 -13.59451 -13.25082 -13.11554 -12.60061 -12.49722 -12.25868 -12.18354 -12.02837 -11.84258 -11.70037 -11.54902 -11.44554 -11.22659 -11.11451 -10.87840 -10.66528 -10.42444 -9.57109 -9.21128 -8.66377 -6.31926 1.39008 1.48289 1.54000 1.74116 2.00818 2.53222 2.60320 3.01162 3.04863 3.43661 3.56626 3.71713 3.99411 4.06172 4.14364 4.21066 4.26275 4.28695 4.37389 4.47806 4.51434 4.66759 4.69534 4.75587 4.85385 4.88528 4.92373 4.98928 5.08419 5.09199 5.10349 5.14200 5.21492 5.27940 5.41072 5.44862 5.65908 5.75473 5.92630 6.04991 6.16897 6.29729 6.52276 6.60753 7.13166 7.42296 8.63287 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.005089 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.805123 B = 5500.985331 C = 5852.090081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.015 4.015 3 Si 1.074 2.926 4 H -0.294 1.294 5 H -0.260 1.260 6 H -0.246 1.246 7 C -0.605 4.605 8 H 0.015 0.985 9 C 0.020 3.980 10 C -0.122 4.122 11 C 0.110 3.890 12 N -0.588 5.588 13 C 0.543 3.457 14 O -0.591 6.591 15 C 0.037 3.963 16 C -0.175 4.175 17 C -0.123 4.123 18 H 0.088 0.912 19 C -0.088 4.088 20 C -0.124 4.124 21 C 0.058 3.942 22 N -0.647 5.647 23 C 0.111 3.889 24 C -0.111 4.111 25 H 0.252 0.748 26 H 0.032 0.968 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.359 0.641 40 H 0.075 0.925 41 H 0.138 0.862 42 H 0.067 0.933 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.239 -12.480 -1.882 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.213 4.213 3 Si 0.895 3.105 4 H -0.220 1.220 5 H -0.185 1.185 6 H -0.170 1.170 7 C -0.642 4.642 8 H 0.033 0.967 9 C 0.001 3.999 10 C -0.161 4.161 11 C -0.012 4.012 12 N -0.318 5.318 13 C 0.331 3.669 14 O -0.472 6.472 15 C -0.058 4.058 16 C -0.215 4.215 17 C -0.142 4.142 18 H 0.106 0.894 19 C -0.125 4.125 20 C -0.161 4.161 21 C -0.070 4.070 22 N -0.280 5.280 23 C -0.010 4.010 24 C -0.149 4.149 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.180 0.820 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 20.455 -10.676 -1.947 23.155 hybrid contribution -0.492 -1.662 -0.874 1.942 sum 19.962 -12.339 -2.820 23.637 Atomic orbital electron populations 1.70936 1.08811 1.29897 1.47734 1.27164 0.95818 1.06225 0.92078 0.83711 0.75193 0.72057 0.79525 1.21997 1.18472 1.17033 1.22228 0.99923 0.95790 1.46289 0.96694 1.18946 0.94492 0.94943 0.91546 1.22178 0.94602 1.00376 0.98930 1.21664 0.93658 0.85264 1.00659 1.48098 1.54383 1.19437 1.09899 1.20016 0.78488 0.84018 0.84329 1.90634 1.63703 1.73013 1.19898 1.20820 1.02432 0.90236 0.92335 1.23686 0.98149 1.02693 0.96973 1.22581 0.97272 0.93000 1.01388 0.89408 1.21234 1.02911 0.93662 0.94721 1.21743 0.98129 1.00038 0.96225 1.22044 0.96457 0.87419 1.01033 1.59297 1.30310 1.14433 1.23971 1.22379 0.95119 1.04488 0.79036 1.21795 0.95904 0.96993 1.00248 0.93920 0.94971 0.95366 0.92529 0.90052 0.90873 0.89307 0.85555 0.90878 0.89373 0.92134 0.88626 0.87807 0.93485 0.81960 0.90677 0.84427 0.91480 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.72 13.69 21.44 0.29 -59.43 16 2 C -0.01 -0.85 5.25 84.65 0.44 -0.41 16 3 Si 1.07 49.70 26.48 68.60 1.82 51.52 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.25 -10.13 5.96 99.48 0.59 -9.54 16 7 C -0.60 -34.59 8.78 25.60 0.22 -34.37 16 8 H 0.01 0.94 7.99 -2.91 -0.02 0.91 16 9 C 0.02 0.91 1.66 -11.51 -0.02 0.89 16 10 C -0.12 -5.42 5.08 30.67 0.16 -5.26 16 11 C 0.11 4.08 6.44 86.36 0.56 4.63 16 12 N -0.59 -19.90 2.97 -818.92 -2.43 -22.34 16 13 C 0.54 18.08 7.27 87.66 0.64 18.72 16 14 O -0.59 -23.72 15.50 -3.03 -0.05 -23.76 16 15 C 0.04 0.88 2.13 2.51 0.01 0.89 16 16 C -0.17 -3.63 9.17 30.58 0.28 -3.35 16 17 C -0.12 -2.70 5.86 -10.87 -0.06 -2.77 16 18 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.09 -1.33 5.91 30.59 0.18 -1.15 16 20 C -0.12 -1.66 6.03 30.72 0.19 -1.48 16 21 C 0.06 0.69 6.33 86.56 0.55 1.24 16 22 N -0.65 -11.23 3.61 -479.75 -1.73 -12.96 16 23 C 0.11 3.37 5.61 86.36 0.48 3.86 16 24 C -0.11 -4.33 5.30 30.67 0.16 -4.16 16 25 H 0.25 16.33 8.74 -92.71 -0.81 15.52 16 26 H 0.03 1.43 6.74 -2.39 -0.02 1.41 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 2.59 5.32 -2.39 -0.01 2.58 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.07 2.80 7.00 -2.39 -0.02 2.78 16 31 H 0.09 2.24 7.52 -2.39 -0.02 2.22 16 32 H 0.13 1.88 7.15 -2.39 -0.02 1.87 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.02 8.07 -2.39 -0.02 1.00 16 35 H 0.06 1.08 7.37 -2.39 -0.02 1.06 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.46 6.96 -2.39 -0.02 0.45 16 39 H 0.36 5.44 8.88 -89.70 -0.80 4.64 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.14 3.60 4.08 -2.39 -0.01 3.59 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -71.50 322.35 1.74 -69.76 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.06 Total: 19.94 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.78 Total: -22.73 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.87 Total: -94.73 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.82 Total: 51.52 kcal Total: -71.50 1.74 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.846 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds