Wall clock time and date at job start Tue Mar 31 2020 00:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.53002 * 109.47363 * 204.99585 * 10 9 7 13 13 N 1.46498 * 109.46790 * 54.99729 * 12 10 9 14 14 C 1.34781 * 119.99881 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99946 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.63833 * 60.41899 * 16 14 13 18 18 C 1.53025 * 109.64341 * 300.00363 * 16 14 13 19 19 C 1.50066 * 110.14688 * 190.88029 * 18 16 14 20 20 C 1.29443 * 124.07729 * 17.12812 * 19 18 16 21 21 C 1.50073 * 124.07701 * 359.55306 * 20 19 18 22 22 C 1.53009 * 110.15022 * 17.09283 * 21 20 19 23 23 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 24 24 C 1.53000 * 117.49550 * 8.74571 * 23 10 9 25 25 C 1.52998 * 117.49641 * 300.08805 * 23 10 9 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.47277 * 174.99833 * 12 10 9 29 29 H 1.08998 * 109.47005 * 295.00527 * 12 10 9 30 30 H 0.97000 * 120.00512 * 359.97438 * 13 12 10 31 31 H 1.09002 * 109.35623 * 311.08015 * 18 16 14 32 32 H 1.08992 * 109.35945 * 70.67380 * 18 16 14 33 33 H 1.08000 * 117.96435 * 197.15269 * 19 18 16 34 34 H 1.08000 * 117.96870 * 179.53169 * 20 19 18 35 35 H 1.09004 * 109.35795 * 137.31435 * 21 20 19 36 36 H 1.08997 * 109.35912 * 256.90740 * 21 20 19 37 37 H 1.09004 * 109.65026 * 190.89646 * 22 21 20 38 38 H 1.09008 * 109.62538 * 70.27927 * 22 21 20 39 39 H 1.09002 * 115.55172 * 154.41804 * 23 10 9 40 40 H 1.08995 * 117.50228 * 0.02562 * 24 23 10 41 41 H 1.09005 * 117.50008 * 145.02707 * 24 23 10 42 42 H 1.09004 * 117.50291 * 214.97565 * 25 23 10 43 43 H 1.09002 * 117.50449 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 1.1812 -4.7519 -0.6123 13 7 0.7356 -4.3346 -1.9440 14 6 -0.0538 -5.1461 -2.6754 15 8 -0.3955 -6.2215 -2.2310 16 6 -0.5127 -4.7166 -4.0451 17 1 0.3529 -4.5549 -4.6875 18 6 -1.3202 -3.4215 -3.9344 19 6 -2.0027 -3.1250 -5.2376 20 6 -2.1797 -3.9963 -6.1784 21 6 -1.7185 -5.4223 -6.1014 22 6 -1.4141 -5.8002 -4.6503 23 6 2.4209 -4.0363 1.4355 24 6 1.8115 -3.1997 2.5623 25 6 3.2978 -3.0613 2.2236 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 1.7562 -5.6743 -0.6940 29 1 0.3132 -4.9200 0.0251 30 1 1.0079 -3.4740 -2.2991 31 1 -2.0697 -3.5290 -3.1503 32 1 -0.6512 -2.5991 -3.6817 33 1 -2.3688 -2.1221 -5.4009 34 1 -2.6913 -3.6774 -7.0744 35 1 -2.4998 -6.0762 -6.4890 36 1 -0.8174 -5.5436 -6.7025 37 1 -0.9011 -6.7616 -4.6217 38 1 -2.3442 -5.8609 -4.0849 39 1 2.5620 -5.1014 1.6191 40 1 1.1518 -2.3794 2.2799 41 1 1.5521 -3.7144 3.4875 42 1 4.0156 -3.4848 2.9261 43 1 3.6166 -2.1496 1.7182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661106842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:30 Heat of formation + Delta-G solvation = 0.250561 kcal Electronic energy + Delta-G solvation = -22151.077198 eV Core-core repulsion = 19003.876905 eV Total energy + Delta-G solvation = -3147.200293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.98545 -38.04241 -37.29437 -34.55611 -33.57175 -31.59501 -30.88372 -30.37202 -27.84748 -24.26484 -23.46211 -23.06945 -22.05181 -21.50009 -20.06163 -19.13168 -17.93154 -17.52220 -17.09579 -15.89181 -15.53562 -15.25213 -14.72287 -14.49111 -13.98717 -13.88103 -13.67213 -13.52462 -13.40446 -13.01455 -12.87045 -12.38247 -12.21009 -11.86276 -11.38806 -11.29778 -10.99029 -10.80733 -10.75880 -10.63260 -10.43339 -10.34995 -10.03625 -9.68204 -9.43181 -9.26149 -9.19680 -9.01731 -9.00737 -8.67391 -7.15834 -6.16592 -3.19374 2.27014 2.91178 3.46870 3.48530 3.53267 3.66540 4.49255 4.61452 4.63904 4.69359 4.87529 5.19388 5.23085 5.28594 5.30343 5.42771 5.43665 5.49377 5.51280 5.67204 5.71587 5.75889 5.80863 5.88261 5.91988 5.97623 6.00728 6.05171 6.17213 6.29031 6.32201 6.34821 6.56963 6.61932 6.66656 6.84666 6.92446 6.95269 7.15632 7.74328 7.89399 8.53874 8.67219 9.11347 9.97916 10.12977 11.30148 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.005230 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.198138 B = 5352.136618 C = 6815.269059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.039 4.039 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.330 4.330 8 H 0.065 0.935 9 N -0.727 5.727 10 C 0.198 3.802 11 H 0.058 0.942 12 C 0.117 3.883 13 N -0.713 5.713 14 C 0.514 3.486 15 O -0.554 6.554 16 C -0.106 4.106 17 H 0.096 0.904 18 C -0.085 4.085 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.090 4.090 22 C -0.098 4.098 23 C -0.178 4.178 24 C -0.162 4.162 25 C -0.173 4.173 26 H 0.255 0.745 27 H 0.369 0.631 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.409 0.591 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -8.517 -8.312 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.237 4.237 3 Si 0.905 3.095 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.371 5.371 10 C 0.087 3.913 11 H 0.075 0.925 12 C -0.007 4.007 13 N -0.365 5.365 14 C 0.300 3.700 15 O -0.433 6.433 16 C -0.127 4.127 17 H 0.114 0.886 18 C -0.122 4.122 19 C -0.162 4.162 20 C -0.183 4.183 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.200 4.200 24 C -0.199 4.199 25 C -0.210 4.210 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.246 0.754 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.156 -7.572 -7.998 11.015 hybrid contribution 0.122 -1.166 0.017 1.173 sum -0.034 -8.738 -7.981 11.834 Atomic orbital electron populations 1.70900 1.06015 1.28481 1.53104 1.25653 0.96965 1.00759 1.00363 0.83311 0.74313 0.75974 0.75859 1.21152 1.22297 1.22342 1.19954 0.91877 0.85453 1.48758 0.91665 1.42462 1.04818 1.00456 1.89317 1.19923 0.94031 0.85589 0.91768 0.92453 1.21582 0.98679 0.97444 0.83016 1.46035 1.50748 1.21863 1.17843 1.20574 0.78075 0.84343 0.86974 1.90651 1.57087 1.22912 1.72610 1.21374 0.99823 0.97272 0.94240 0.88605 1.20440 0.99212 0.96111 0.96423 1.22045 0.99633 0.99298 0.95208 1.22033 1.01696 0.95468 0.99146 1.20472 1.01072 0.94200 0.96971 1.21400 0.99716 0.97635 0.94816 1.23062 1.06107 0.95368 0.95462 1.22856 0.96844 1.03327 0.96918 1.22853 0.93341 1.01886 1.02885 0.93316 0.79731 0.91866 0.91898 0.75450 0.90210 0.89743 0.87539 0.88060 0.90971 0.91004 0.90869 0.91227 0.89594 0.86859 0.91220 0.90959 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -26.92 13.70 55.49 0.76 -26.16 16 2 C -0.04 -1.04 5.50 -17.43 -0.10 -1.13 16 3 Si 1.07 24.47 29.92 -169.99 -5.09 19.38 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.30 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.33 -8.17 8.15 -15.06 -0.12 -8.29 16 8 H 0.07 1.63 6.91 -52.49 -0.36 1.26 16 9 N -0.73 -15.84 3.07 -53.43 -0.16 -16.01 16 10 C 0.20 3.62 2.86 -67.94 -0.19 3.43 16 11 H 0.06 1.09 8.08 -51.92 -0.42 0.67 16 12 C 0.12 1.98 5.22 -4.04 -0.02 1.96 16 13 N -0.71 -11.57 5.30 -60.30 -0.32 -11.89 16 14 C 0.51 8.35 7.14 -10.98 -0.08 8.27 16 15 O -0.55 -10.66 15.90 5.56 0.09 -10.57 16 16 C -0.11 -1.39 2.58 -91.56 -0.24 -1.63 16 17 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 18 C -0.08 -1.12 5.27 -28.18 -0.15 -1.27 16 19 C -0.14 -1.70 9.80 -35.90 -0.35 -2.05 16 20 C -0.17 -1.76 9.80 -35.90 -0.35 -2.11 16 21 C -0.09 -0.90 6.12 -28.18 -0.17 -1.08 16 22 C -0.10 -1.20 4.69 -26.52 -0.12 -1.32 16 23 C -0.18 -3.12 5.71 -90.62 -0.52 -3.64 16 24 C -0.16 -3.05 9.74 -26.69 -0.26 -3.31 16 25 C -0.17 -3.11 9.87 -26.69 -0.26 -3.37 16 26 H 0.26 7.23 6.77 -40.82 -0.28 6.95 16 27 H 0.37 8.61 6.63 -40.82 -0.27 8.34 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.41 6.69 7.81 -40.82 -0.32 6.38 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.08 1.18 7.89 -51.93 -0.41 0.77 16 33 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 38 H 0.07 0.93 8.13 -51.92 -0.42 0.50 16 39 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 40 H 0.11 2.54 6.68 -51.93 -0.35 2.19 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.10 2.10 6.22 -51.93 -0.32 1.78 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -28.46 343.98 -9.48 -37.93 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -7.00 Total: 17.68 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.94 Total: -15.55 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.28 Total: -54.06 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.09 Total: 19.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.46 -9.48 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661106842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.184 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds