Wall clock time and date at job start Tue Mar 31 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.53002 * 109.47363 * 204.99585 * 10 9 7 13 13 N 1.46498 * 109.46790 * 54.99729 * 12 10 9 14 14 C 1.34781 * 119.99881 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99946 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.63833 * 60.41899 * 16 14 13 18 18 C 1.53025 * 109.64341 * 300.00363 * 16 14 13 19 19 C 1.50066 * 110.14688 * 190.88029 * 18 16 14 20 20 C 1.29443 * 124.07729 * 17.12812 * 19 18 16 21 21 C 1.50073 * 124.07701 * 359.55306 * 20 19 18 22 22 C 1.53009 * 110.15022 * 17.09283 * 21 20 19 23 23 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 24 24 C 1.53000 * 117.49550 * 8.74571 * 23 10 9 25 25 C 1.52998 * 117.49641 * 300.08805 * 23 10 9 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.47277 * 174.99833 * 12 10 9 29 29 H 1.08998 * 109.47005 * 295.00527 * 12 10 9 30 30 H 0.97000 * 120.00512 * 359.97438 * 13 12 10 31 31 H 1.09002 * 109.35623 * 311.08015 * 18 16 14 32 32 H 1.08992 * 109.35945 * 70.67380 * 18 16 14 33 33 H 1.08000 * 117.96435 * 197.15269 * 19 18 16 34 34 H 1.08000 * 117.96870 * 179.53169 * 20 19 18 35 35 H 1.09004 * 109.35795 * 137.31435 * 21 20 19 36 36 H 1.08997 * 109.35912 * 256.90740 * 21 20 19 37 37 H 1.09004 * 109.65026 * 190.89646 * 22 21 20 38 38 H 1.09008 * 109.62538 * 70.27927 * 22 21 20 39 39 H 1.09002 * 115.55172 * 154.41804 * 23 10 9 40 40 H 1.08995 * 117.50228 * 0.02562 * 24 23 10 41 41 H 1.09005 * 117.50008 * 145.02707 * 24 23 10 42 42 H 1.09004 * 117.50291 * 214.97565 * 25 23 10 43 43 H 1.09002 * 117.50449 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 1.1812 -4.7519 -0.6123 13 7 0.7356 -4.3346 -1.9440 14 6 -0.0538 -5.1461 -2.6754 15 8 -0.3955 -6.2215 -2.2310 16 6 -0.5127 -4.7166 -4.0451 17 1 0.3529 -4.5549 -4.6875 18 6 -1.3202 -3.4215 -3.9344 19 6 -2.0027 -3.1250 -5.2376 20 6 -2.1797 -3.9963 -6.1784 21 6 -1.7185 -5.4223 -6.1014 22 6 -1.4141 -5.8002 -4.6503 23 6 2.4209 -4.0363 1.4355 24 6 1.8115 -3.1997 2.5623 25 6 3.2978 -3.0613 2.2236 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 1.7562 -5.6743 -0.6940 29 1 0.3132 -4.9200 0.0251 30 1 1.0079 -3.4740 -2.2991 31 1 -2.0697 -3.5290 -3.1503 32 1 -0.6512 -2.5991 -3.6817 33 1 -2.3688 -2.1221 -5.4009 34 1 -2.6913 -3.6774 -7.0744 35 1 -2.4998 -6.0762 -6.4890 36 1 -0.8174 -5.5436 -6.7025 37 1 -0.9011 -6.7616 -4.6217 38 1 -2.3442 -5.8609 -4.0849 39 1 2.5620 -5.1014 1.6191 40 1 1.1518 -2.3794 2.2799 41 1 1.5521 -3.7144 3.4875 42 1 4.0156 -3.4848 2.9261 43 1 3.6166 -2.1496 1.7182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661106842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:27 Heat of formation + Delta-G solvation = -15.407577 kcal Electronic energy + Delta-G solvation = -22151.756186 eV Core-core repulsion = 19003.876905 eV Total energy + Delta-G solvation = -3147.879281 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.25123 -39.46364 -38.50208 -36.02320 -35.36586 -32.90149 -32.04246 -31.62888 -29.47094 -25.70845 -25.11821 -24.22874 -23.32054 -22.92542 -21.42460 -20.59040 -19.39556 -18.88763 -18.37616 -17.23135 -16.77617 -16.69856 -16.20664 -15.97305 -15.59036 -15.26597 -15.18037 -14.74871 -14.65000 -14.17933 -14.01661 -13.67859 -13.22890 -13.14551 -12.97164 -12.82191 -12.58162 -12.23747 -12.13133 -12.01111 -11.87389 -11.74467 -11.34459 -11.27296 -11.04815 -10.95619 -10.73553 -10.64572 -10.07356 -9.90731 -9.07869 -8.25754 -5.22127 1.38666 1.59233 1.61793 1.69213 1.84730 2.23106 2.73828 3.05080 3.49762 3.56595 3.69582 3.72965 3.82524 3.89471 4.15406 4.22486 4.23922 4.25214 4.38872 4.40187 4.42853 4.50697 4.59108 4.61284 4.70255 4.82383 4.87600 4.89102 5.02480 5.04573 5.09604 5.16139 5.24053 5.31327 5.37440 5.50258 5.56752 5.74246 5.75212 6.03416 6.53882 6.59373 7.14676 7.20123 8.04859 8.17719 9.24290 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.005230 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.198138 B = 5352.136618 C = 6815.269059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.096 4.096 3 Si 1.115 2.885 4 H -0.301 1.301 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.306 4.306 8 H 0.067 0.933 9 N -0.730 5.730 10 C 0.198 3.802 11 H 0.058 0.942 12 C 0.127 3.873 13 N -0.712 5.712 14 C 0.513 3.487 15 O -0.585 6.585 16 C -0.099 4.099 17 H 0.114 0.886 18 C -0.079 4.079 19 C -0.167 4.167 20 C -0.150 4.150 21 C -0.088 4.088 22 C -0.096 4.096 23 C -0.170 4.170 24 C -0.172 4.172 25 C -0.167 4.167 26 H 0.244 0.756 27 H 0.359 0.641 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.409 0.591 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 -9.647 -9.458 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.288 4.288 3 Si 0.943 3.057 4 H -0.228 1.228 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.438 4.438 8 H 0.085 0.915 9 N -0.372 5.372 10 C 0.089 3.911 11 H 0.076 0.924 12 C 0.002 3.998 13 N -0.363 5.363 14 C 0.300 3.700 15 O -0.466 6.466 16 C -0.120 4.120 17 H 0.132 0.868 18 C -0.116 4.116 19 C -0.185 4.185 20 C -0.168 4.168 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.191 4.191 24 C -0.210 4.210 25 C -0.204 4.204 26 H 0.054 0.946 27 H 0.192 0.808 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.245 0.755 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.145 -8.735 -9.149 12.701 hybrid contribution -0.240 -0.914 0.392 1.023 sum 0.905 -9.648 -8.757 13.061 Atomic orbital electron populations 1.70995 1.07153 1.27829 1.56514 1.26719 0.96964 1.03822 1.01341 0.82746 0.73416 0.72696 0.76841 1.22774 1.21162 1.20509 1.20141 0.91911 0.86275 1.45442 0.91531 1.42504 1.04371 1.01075 1.89238 1.20045 0.93812 0.84496 0.92734 0.92408 1.21455 0.97942 0.97369 0.83053 1.46044 1.50759 1.21825 1.17636 1.21124 0.77250 0.83702 0.87888 1.90631 1.58130 1.24252 1.73540 1.21393 1.00590 0.97451 0.92556 0.86790 1.20319 0.98557 0.95685 0.97052 1.21998 1.01339 1.00174 0.94987 1.22298 0.99990 0.95347 0.99174 1.20527 1.02525 0.94063 0.95340 1.21387 0.98602 0.97127 0.96265 1.23063 1.05176 0.96796 0.94053 1.22726 0.96866 1.02877 0.98486 1.22837 0.93273 1.01105 1.03199 0.94553 0.80815 0.90283 0.93310 0.75481 0.92277 0.91077 0.87164 0.85861 0.89061 0.89248 0.91120 0.92830 0.86663 0.90957 0.88993 0.87892 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -57.64 13.70 21.65 0.30 -57.34 16 2 C -0.10 -5.19 5.50 84.86 0.47 -4.72 16 3 Si 1.12 49.76 29.92 68.60 2.05 51.81 16 4 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.31 -15.26 8.15 84.03 0.69 -14.58 16 8 H 0.07 3.29 6.91 -2.91 -0.02 3.27 16 9 N -0.73 -32.23 3.07 -322.95 -0.99 -33.22 16 10 C 0.20 7.12 2.86 44.99 0.13 7.25 16 11 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 12 C 0.13 4.19 5.22 86.38 0.45 4.64 16 13 N -0.71 -23.08 5.30 -463.07 -2.45 -25.53 16 14 C 0.51 16.61 7.14 87.66 0.63 17.24 16 15 O -0.58 -22.50 15.90 -3.02 -0.05 -22.55 16 16 C -0.10 -2.54 2.58 -11.40 -0.03 -2.57 16 17 H 0.11 2.54 8.13 -2.39 -0.02 2.52 16 18 C -0.08 -2.12 5.27 29.66 0.16 -1.96 16 19 C -0.17 -3.81 9.80 27.04 0.27 -3.54 16 20 C -0.15 -2.83 9.80 27.04 0.27 -2.57 16 21 C -0.09 -1.52 6.12 29.65 0.18 -1.34 16 22 C -0.10 -2.24 4.69 30.73 0.14 -2.10 16 23 C -0.17 -5.63 5.71 -10.79 -0.06 -5.69 16 24 C -0.17 -6.32 9.74 30.62 0.30 -6.03 16 25 C -0.17 -5.70 9.87 30.62 0.30 -5.40 16 26 H 0.24 14.41 6.77 -92.71 -0.63 13.78 16 27 H 0.36 17.39 6.63 -92.71 -0.61 16.78 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.41 13.46 7.81 -92.71 -0.72 12.74 16 31 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 32 H 0.07 2.06 7.89 -2.39 -0.02 2.04 16 33 H 0.11 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.12 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.69 7.90 -2.38 -0.02 1.67 16 38 H 0.05 1.41 8.13 -2.38 -0.02 1.39 16 39 H 0.12 3.22 8.11 -2.39 -0.02 3.20 16 40 H 0.07 3.30 6.68 -2.39 -0.02 3.29 16 41 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 42 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 43 H 0.08 3.09 6.22 -2.39 -0.01 3.07 16 Total: -1.00 -62.02 343.98 2.54 -59.48 By element: Atomic # 1 Polarization: 48.91 SS G_CDS: -0.19 Total: 48.71 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 3.88 Total: -21.35 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -3.15 Total: -116.10 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -62.02 2.54 -59.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661106842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.069 kcal (2) G-P(sol) polarization free energy of solvation -62.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds