Wall clock time and date at job start Tue Mar 31 2020 00:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86789 * 119.99587 * 2 1 4 4 H 1.48502 * 109.47631 * 270.00264 * 3 2 1 5 5 H 1.48500 * 109.47379 * 30.00653 * 3 2 1 6 6 H 1.48503 * 109.47267 * 150.00148 * 3 2 1 7 7 C 1.38812 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99381 * 179.97438 * 7 2 1 10 10 C 1.46509 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47078 * 34.99986 * 10 9 7 12 12 C 1.52998 * 109.47101 * 155.00298 * 10 9 7 13 13 N 1.46503 * 109.46969 * 305.00094 * 12 10 9 14 14 C 1.34779 * 119.99980 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00080 * 179.97438 * 14 13 12 17 17 H 1.09011 * 115.52537 * 325.49544 * 16 14 13 18 18 C 1.52993 * 117.46356 * 110.95656 * 16 14 13 19 19 H 1.09004 * 119.29949 * 356.29777 * 18 16 14 20 20 C 1.54268 * 118.20211 * 201.21270 * 18 16 14 21 21 C 1.54885 * 104.19796 * 272.21394 * 20 18 16 22 22 C 1.57046 * 102.88178 * 38.08445 * 21 20 18 23 23 C 1.52995 * 117.46273 * 180.02562 * 16 14 13 24 24 H 1.09002 * 119.29925 * 3.70795 * 23 16 14 25 25 C 1.53006 * 109.46946 * 275.00213 * 10 9 7 26 26 C 1.53000 * 117.49776 * 60.00155 * 25 10 9 27 27 C 1.52997 * 117.49537 * 128.62610 * 25 10 9 28 28 H 0.96994 * 119.99986 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00398 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47013 * 64.99855 * 12 10 9 31 31 H 1.08993 * 109.47426 * 185.00167 * 12 10 9 32 32 H 0.96997 * 119.99911 * 359.97438 * 13 12 10 33 33 H 1.09004 * 110.48293 * 30.89603 * 20 18 16 34 34 H 1.09001 * 110.48324 * 153.53362 * 20 18 16 35 35 H 1.08994 * 110.75677 * 156.25457 * 21 20 18 36 36 H 1.09001 * 110.75780 * 279.44358 * 21 20 18 37 37 H 1.09000 * 110.55789 * 203.83939 * 22 21 20 38 38 H 1.08999 * 111.38033 * 80.52691 * 22 21 20 39 39 H 1.09002 * 115.56020 * 274.30738 * 25 10 9 40 40 H 1.08990 * 117.49990 * 359.97438 * 26 25 10 41 41 H 1.09004 * 117.49237 * 214.97568 * 26 25 10 42 42 H 1.08999 * 117.49685 * 145.02116 * 27 25 10 43 43 H 1.08999 * 117.52022 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4708 -0.0011 11 1 3.5647 -3.2065 -0.5901 12 6 5.4992 -2.2589 -0.6112 13 7 5.3612 -1.6640 -1.9429 14 6 6.4589 -1.3860 -2.6738 15 8 7.5609 -1.6287 -2.2294 16 6 6.3169 -0.7746 -4.0439 17 1 5.4452 -1.0966 -4.6139 18 6 6.7810 0.6722 -4.2224 19 1 7.1369 1.2291 -3.3556 20 6 6.2173 1.4772 -5.4116 21 6 7.1846 1.1587 -6.5785 22 6 7.5105 -0.3617 -6.3581 23 6 7.6009 -0.4836 -4.8232 24 1 8.5608 -0.7782 -4.3989 25 6 4.2589 -2.9750 1.4361 26 6 2.9757 -3.2491 2.2229 27 6 3.8324 -4.4154 1.7262 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0007 30 1 6.0786 -1.5914 0.0266 31 1 6.0106 -3.2179 -0.6930 32 1 4.4798 -1.4703 -2.2985 33 1 5.2071 1.1456 -5.6520 34 1 6.2266 2.5441 -5.1887 35 1 6.6933 1.3096 -7.5397 36 1 8.0875 1.7654 -6.5085 37 1 8.4646 -0.6192 -6.8181 38 1 6.7152 -0.9987 -6.7450 39 1 5.1133 -2.5823 1.9874 40 1 2.0271 -3.0698 1.7170 41 1 2.9859 -3.0366 3.2920 42 1 4.4062 -4.9703 2.4686 43 1 3.4470 -5.0040 0.8937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661118265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:35 Heat of formation + Delta-G solvation = 17.661431 kcal Electronic energy + Delta-G solvation = -21778.620475 eV Core-core repulsion = 18632.175174 eV Total energy + Delta-G solvation = -3146.445301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.29525 -38.50220 -37.48120 -34.74136 -33.44534 -31.85757 -31.15259 -28.58816 -28.37654 -24.75655 -23.06014 -22.04016 -21.70011 -20.79363 -20.18894 -19.76030 -19.54886 -17.89146 -17.09144 -15.91297 -15.39577 -15.24201 -14.98975 -14.66135 -14.26276 -13.83101 -13.78433 -13.30600 -13.07077 -13.01155 -12.73947 -12.41658 -11.62024 -11.52543 -11.48781 -11.38281 -11.26020 -11.03789 -10.95474 -10.90055 -10.74417 -10.28833 -10.18375 -9.96088 -9.75370 -9.68908 -9.47602 -9.37677 -9.03270 -8.75839 -7.38081 -5.84435 -3.20669 2.61589 3.29639 3.33290 3.36989 3.41580 3.69928 4.37948 4.44980 4.52503 4.57337 4.61753 5.03749 5.08146 5.09250 5.13337 5.26748 5.29134 5.32425 5.40508 5.43447 5.54958 5.57472 5.65710 5.67127 5.74313 5.84068 5.89870 5.90515 5.95198 6.00473 6.12321 6.15514 6.19128 6.23371 6.47647 6.54807 6.72016 6.78492 6.98192 7.82251 7.89778 8.33524 8.46418 9.11127 9.83850 10.03294 11.33251 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.005184 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.490645 B = 5399.955480 C = 6845.555029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.199 3.801 11 H 0.064 0.936 12 C 0.116 3.884 13 N -0.712 5.712 14 C 0.540 3.460 15 O -0.553 6.553 16 C -0.162 4.162 17 H 0.121 0.879 18 C -0.137 4.137 19 H 0.113 0.887 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.097 4.097 23 C -0.133 4.133 24 H 0.120 0.880 25 C -0.164 4.164 26 C -0.154 4.154 27 C -0.193 4.193 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.753 -1.657 -9.336 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.089 3.911 11 H 0.082 0.918 12 C -0.008 4.008 13 N -0.363 5.363 14 C 0.326 3.674 15 O -0.431 6.431 16 C -0.183 4.183 17 H 0.139 0.861 18 C -0.155 4.155 19 H 0.131 0.869 20 C -0.135 4.135 21 C -0.159 4.159 22 C -0.134 4.134 23 C -0.152 4.152 24 H 0.138 0.862 25 C -0.186 4.186 26 C -0.191 4.191 27 C -0.231 4.231 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.263 -1.880 -9.023 16.150 hybrid contribution 0.030 1.332 0.234 1.353 sum 13.293 -0.548 -8.788 15.945 Atomic orbital electron populations 1.69693 1.05071 1.25869 1.57187 1.24635 0.95130 0.97044 1.01886 0.86631 0.79278 0.85260 0.77825 1.21028 1.21843 1.20403 1.19006 0.80314 0.94547 1.43258 0.89004 1.42840 1.04100 1.01704 1.89804 1.20022 0.89773 0.89682 0.91645 0.91799 1.21652 0.98326 0.98092 0.82769 1.45945 1.09558 1.62937 1.17857 1.19561 0.84333 0.77921 0.85563 1.90656 1.26081 1.54023 1.72387 1.22383 1.00577 0.99570 0.95758 0.86137 1.23229 1.03265 0.88566 1.00485 0.86867 1.22003 0.99064 0.99656 0.92810 1.23046 0.99232 0.95604 0.98066 1.22377 1.01916 0.96292 0.92828 1.23226 0.95383 1.02553 0.93993 0.86240 1.22950 0.99067 0.97132 0.99437 1.22840 0.96815 1.00393 0.99095 1.22943 1.05424 0.91299 1.03421 0.93022 0.80477 0.91910 0.91233 0.75267 0.90908 0.90866 0.91317 0.91208 0.90955 0.91046 0.89172 0.87097 0.90205 0.90037 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.97 55.49 0.78 -27.07 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.31 27.73 -169.99 -4.71 16.59 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.24 -6.20 9.11 -15.06 -0.14 -6.33 16 8 H 0.09 2.53 7.14 -52.49 -0.37 2.16 16 9 N -0.74 -15.94 4.34 -53.42 -0.23 -16.18 16 10 C 0.20 3.53 2.70 -67.92 -0.18 3.35 16 11 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 12 C 0.12 1.88 5.22 -4.04 -0.02 1.86 16 13 N -0.71 -11.31 5.39 -60.30 -0.32 -11.64 16 14 C 0.54 8.68 7.61 -10.99 -0.08 8.60 16 15 O -0.55 -10.47 16.32 5.56 0.09 -10.38 16 16 C -0.16 -2.11 5.73 -91.78 -0.53 -2.64 16 17 H 0.12 1.40 8.14 -51.92 -0.42 0.97 16 18 C -0.14 -1.66 6.64 -89.48 -0.59 -2.25 16 19 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 20 C -0.10 -0.98 6.63 -25.07 -0.17 -1.14 16 21 C -0.12 -1.02 6.96 -23.54 -0.16 -1.19 16 22 C -0.10 -0.88 6.79 -23.89 -0.16 -1.04 16 23 C -0.13 -1.56 6.34 -89.49 -0.57 -2.12 16 24 H 0.12 1.54 7.78 -51.93 -0.40 1.14 16 25 C -0.16 -2.77 5.36 -90.62 -0.49 -3.26 16 26 C -0.15 -2.73 9.78 -26.73 -0.26 -3.00 16 27 C -0.19 -2.90 10.18 -26.73 -0.27 -3.17 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.36 7.96 5.66 -40.82 -0.23 7.73 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.41 6.49 8.14 -40.82 -0.33 6.16 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 40 H 0.11 2.29 6.23 -51.93 -0.32 1.97 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -30.00 347.99 -10.03 -40.04 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -7.15 Total: 15.56 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.72 Total: -12.16 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.22 Total: -54.89 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.59 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.00 -10.03 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661118265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.697 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds